Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001220

Physical Location & Seq

Genomic Coordinates Forward (+)

22243959 .. 22246401

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18500.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGTCGATTACAGGAAATACTCAAAGGTTCAGCAATGGACTGTTGGATTATCAGGCGGTAAAGACAAGATAGCCATAATTAGAGCATCAGGTAGCATTAGTCGTGTACAAGGCGGTTTAAGTCTTCCTGGTTCTAGTATTATAGGGGAACAGTTCATTGAGAAGATACGCACTGTGAGAGAATCGAAAAGATATAAGGCCGCTATTATTCGAATTGACAGCCCTGGAGGTGATGCCCTTGCTTCTGATTTGATGTGGAGGGAAATCAGACTTTTGGCTGCATCAAAACCTGTCATTGCATCAATGTCTGATGTGGCAGCAAGTGGAGGATACTATATGGCAATGGCAGCAGACGCCATTGTTGCAGAAAATCTAACCTTAACGGGTTCCATTGGGGTTGTGACAGGGAAGTTTAACCTGGGAAAACTGTATGAGAAGATTGGCTTCAACAAAGAAATTATATCAAGGGGAAAATATGCTGAAGTTCTTGCAGCTGAACAACGATCCTTCAGACCAGAAGAAGCAGAAATCTTTGCTAAGTCTGCACAGAATGCATATAAGCAATTTCGAGACAAGGCAGCTCTTTCCAGATCGATGACCGTAGATAAAATGGAGGAGGTTGCACAAGGGAGAGTTTGGACTGGTAACGATGCAGCTTCACGGGGTTTAGTTGATGCTATTGGCGGACTTTCTCGCGCTGTCGCAATAGCAAAGCTCAAGGCAAATATACCCCAAGACAAACAGGTTGCACTCGTGGAGCTTGCAAGACCCTCGCCGACACTGCCAGAAATTTTAAGTGGCATAGGAGCTAGTTTGGTTGGAGTGGATAGAACAATGAAGGAGGTGCTGCAGGAGTTGACGTTTTCCGACGGAGTCCAAGCCCGGATGGAGGGAATCATGTTTCAGAGACTGGAGGGAGCTTCTCAGGCCAACCCCATCTTCTCTTTGTTCAAAGATTACTTTGGCTCCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S49

Protein Analysis

325

Amino Acids

35.02

Weight (kDa)

9.46

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73990 AT1G73990
fragaria_vesca	FvH4_5g13110 FvH4_5g13112
malus_domestica	MD06G1207100.v1.1 MD14G1217600.v1.1
prunus_persica	Prupe.5G211500_v2.0.a1 Prupe.5G211500_v2.0.a1
pyrus_communis	pycom06g18500 pycom14g18030
rosa_chinensis	RchiOBHm_Chr2g0126491 RchiOBHm_Chr2g0152701 RchiOBHm_Chr6g0264331 RchiOBHm_Chr6g0264341 RchiOBHm_Chr6g0264351 RchiOBHm_Chr7g0184031 RchiOBHm_Chr7g0184041
rosa_laevigata	RLG00000005008
rosa_multiflora	Rmu_sc0000532.1_g000028 Rmu_sc0004712.1_g000014 Rmu_sc0004712.1_g000024 Rmu_sc0007533.1_g000011 Rmu_sc0010483.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431720 Rroxscaffold_3G00219040 Rroxscaffold_3G00219050 Rroxscaffold_3G00269980 Rroxscaffold_5G00361620
rosa_rugosa	Rorug01G0193000 Rorug03G0324200 Rorug06G0461700
rosa_samantha	Rh2AG316100 Rh2AG421900 Rh2BG328900 Rh2CG409100 Rh4CG063900 Rh5CG558100 Rh6BG128500 Rh6CG126800 Rh6DG114100 Rh7AG063000 Rh7AG499000 Rh7AG499100 Rh7BG063200 Rh7BG469900 Rh7BG470100 Rh7CG064200 Rh7DG063300 Rh7DG063600 Rh7DG392100
rosa_wichuraiana	Rw0G022820 Rw6G011500 Rw7G005210 Rw7G005220 Rw7G020530 Rw7G042150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	696
AciI	CCGC	4 cut(s)	57, 114, 201, 684
AclWI	GGATC	1 cut(s)	498
AcsI	RAATTY	1 cut(s)	789
AcuI	CTGAAG	2 cut(s)	493, 501
AcyI	GRCGYC	1 cut(s)	354
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	889
AgsI	TTSAA	2 cut(s)	448, 952
AjnI	CCWGG	3 cut(s)	127, 223, 417
AjuI	GAANNNNNNNTTGG	2 cut(s)	923, 955
AluBI	AGCT	7 cut(s)	494, 581, 656, 715, 760, 809, 920
AluI	AGCT	7 cut(s)	494, 581, 656, 715, 760, 809, 920
Alw26I	GTCTC	2 cut(s)	564, 901
AlwI	GGATC	1 cut(s)	498
AlwNI	CAGNNNCTG	1 cut(s)	910
AoxI	GGCC	2 cut(s)	198, 927
ApeKI	GCWGC	7 cut(s)	278, 317, 347, 491, 578, 653, 847
ApoI	RAATTY	1 cut(s)	789
AspLEI	GCGC	1 cut(s)	698
AsuC2I	CCSGG	1 cut(s)	883
AsuHPI	GGTGA	1 cut(s)	242
AsuII	TTCGAA	1 cut(s)	211
BauI	CACGAG	1 cut(s)	752
BbsI	GAAGAC	1 cut(s)	116
BbvI	GCAGC	7 cut(s)	265, 329, 359, 503, 590, 665, 834
BccI	CCATC	2 cut(s)	880, 944
BcgI	CGANNNNNNTGC	2 cut(s)	753, 787
BciT130I	CCWGG	3 cut(s)	129, 225, 419
BciVI	GTATCC	1 cut(s)	323
BcnI	CCSGG	1 cut(s)	883
BcoDI	GTCTC	2 cut(s)	564, 901
BfaI	CTAG	2 cut(s)	135, 810
BfmI	CTRYAG	1 cut(s)	848
BfuI	GTATCC	1 cut(s)	323
BisI	GCNGC	8 cut(s)	201, 279, 318, 348, 492, 579, 654, 848
BlsI	GCNGC	8 cut(s)	202, 280, 319, 349, 493, 580, 655, 849
Bme1390I	CCNGG	4 cut(s)	129, 225, 419, 883
BmiI	GGNNCC	2 cut(s)	388, 967
BmrFI	CCNGG	4 cut(s)	129, 225, 419, 883
BmsI	GCATC	6 cut(s)	95, 223, 290, 308, 640, 664
BpiI	GAAGAC	1 cut(s)	116
BpmI	CTGGAG	2 cut(s)	246, 932
Bpu14I	TTCGAA	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	701
BpuMI	CCSGG	1 cut(s)	883
Bsa29I	ATCGAT	1 cut(s)	593
BsaHI	GRCGYC	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	223, 418
BsaXI	ACNNNNNCTCC	3 cut(s)	845, 875, 950
Bsc4I	CCNNNNNNNGG	1 cut(s)	889
Bse1I	ACTGG	2 cut(s)	646, 915
Bse3DI	GCAATG	3 cut(s)	41, 294, 348
BseBI	CCWGG	3 cut(s)	129, 225, 419
BseCI	ATCGAT	1 cut(s)	593
BseDI	CCNNGG	2 cut(s)	223, 418
BseGI	GGATG	1 cut(s)	891
BseLI	CCNNNNNNNGG	1 cut(s)	889
BseMI	GCAATG	3 cut(s)	41, 294, 348
BseMII	CTCAG	1 cut(s)	938
BseNI	ACTGG	2 cut(s)	646, 915
BseRI	GAGGAG	1 cut(s)	629
BseXI	GCAGC	7 cut(s)	265, 329, 359, 503, 590, 665, 834
BsgI	GTGCAG	1 cut(s)	528
Bsh1236I	CGCG	1 cut(s)	696
BshFI	GGCC	2 cut(s)	200, 929
BshVI	ATCGAT	1 cut(s)	593
BsiSI	CCGG	1 cut(s)	883
BslI	CCNNNNNNNGG	1 cut(s)	889
BsmAI	GTCTC	2 cut(s)	564, 901
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	2 cut(s)	200, 929
Bsp119I	TTCGAA	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	106
Bsp143I	GATC	2 cut(s)	503, 590
BspACI	CCGC	4 cut(s)	57, 114, 201, 684
BspANI	GGCC	2 cut(s)	200, 929
BspCNI	CTCAG	1 cut(s)	937
BspDI	ATCGAT	1 cut(s)	593
BspFNI	CGCG	1 cut(s)	696
BspLI	GGNNCC	2 cut(s)	388, 967
BspMAI	CTGCAG	1 cut(s)	852
BspPI	GGATC	1 cut(s)	498
BspT104I	TTCGAA	1 cut(s)	211
BsrDI	GCAATG	3 cut(s)	41, 294, 348
BsrGI	TGTACA	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	646, 915
BssECI	CCNNGG	2 cut(s)	223, 418
BssMI	GATC	2 cut(s)	503, 590
BssNI	GRCGYC	1 cut(s)	354
BssSI	CACGAG	1 cut(s)	752
Bst2BI	CACGAG	1 cut(s)	752
Bst2UI	CCWGG	3 cut(s)	129, 225, 419
Bst4CI	ACNGT	5 cut(s)	43, 153, 175, 429, 601
BstACI	GRCGYC	1 cut(s)	354
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstAUI	TGTACA	1 cut(s)	106
BstBI	TTCGAA	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	762
BstDEI	CTNAG	2 cut(s)	537, 924
BstF5I	GGATG	1 cut(s)	891
BstFNI	CGCG	1 cut(s)	696
BstHHI	GCGC	1 cut(s)	698
BstKTI	GATC	2 cut(s)	506, 593
BstMAI	GTCTC	2 cut(s)	564, 901
BstMBI	GATC	2 cut(s)	503, 590
BstMWI	GCNNNNNNNGC	7 cut(s)	347, 353, 362, 542, 551, 781, 926
BstNI	CCWGG	3 cut(s)	129, 225, 419
BstSCI	CCNGG	4 cut(s)	127, 223, 417, 881
BstSFI	CTRYAG	1 cut(s)	848
BstUI	CGCG	1 cut(s)	696
BstV1I	GCAGC	7 cut(s)	265, 329, 359, 503, 590, 665, 834
BstV2I	GAAGAC	1 cut(s)	116
Bsu15I	ATCGAT	1 cut(s)	593
BsuI	GTATCC	1 cut(s)	323
BsuRI	GGCC	2 cut(s)	200, 929
BsuTUI	ATCGAT	1 cut(s)	593
BtsCI	GGATG	1 cut(s)	891
BtsI	GCAGTG	1 cut(s)	779
BtsIMutI	CAGTG	2 cut(s)	171, 779
Cac8I	GCNNGC	1 cut(s)	762
CaiI	CAGNNNCTG	1 cut(s)	910
CfoI	GCGC	1 cut(s)	698
ClaI	ATCGAT	1 cut(s)	593
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	1 cut(s)	898
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	2 cut(s)	537, 924
DpnI	GATC	2 cut(s)	505, 592
DpnII	GATC	2 cut(s)	503, 590
EciI	GGCGGA	1 cut(s)	699
Eco57I	CTGAAG	2 cut(s)	493, 501
EcoRII	CCWGG	3 cut(s)	127, 223, 417
EcoT22I	ATGCAT	1 cut(s)	556
FaeI	CATG	1 cut(s)	901
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FatI	CATG	1 cut(s)	897
Fnu4HI	GCNGC	8 cut(s)	201, 279, 318, 348, 492, 579, 654, 848
FokI	GGATG	1 cut(s)	898
Fsp4HI	GCNGC	8 cut(s)	201, 279, 318, 348, 492, 579, 654, 848
FspBI	CTAG	2 cut(s)	135, 810
GlaI	GCGC	1 cut(s)	697
GluI	GCNGC	8 cut(s)	201, 279, 318, 348, 492, 579, 654, 848
GsuI	CTGGAG	2 cut(s)	246, 932
HaeIII	GGCC	2 cut(s)	200, 929
HapII	CCGG	1 cut(s)	883
HgaI	GACGC	1 cut(s)	362
HhaI	GCGC	1 cut(s)	698
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	1 cut(s)	901
Hin6I	GCGC	1 cut(s)	696
HinP1I	GCGC	1 cut(s)	696
HincII	GTYRAC	1 cut(s)	858
HindII	GTYRAC	1 cut(s)	858
HinfI	GANTC	3 cut(s)	182, 873, 894
HpaII	CCGG	1 cut(s)	883
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	107, 858
Hpy188I	TCNGA	6 cut(s)	247, 269, 310, 512, 868, 906
Hpy188III	TCNNGA	2 cut(s)	569, 588
Hpy8I	GTNNAC	2 cut(s)	107, 858
Hpy99I	CGWCG	1 cut(s)	872
HpyAV	CCTTC	2 cut(s)	517, 832
HpyCH4III	ACNGT	5 cut(s)	43, 153, 175, 429, 601
HpyCH4IV	ACGT	1 cut(s)	860
HpyF10VI	GCNNNNNNNGC	7 cut(s)	347, 353, 362, 542, 551, 781, 926
HpyF3I	CTNAG	2 cut(s)	537, 924
HpySE526I	ACGT	1 cut(s)	860
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	1 cut(s)	901
HspAI	GCGC	1 cut(s)	696
Kzo9I	GATC	2 cut(s)	503, 590
LmnI	GCTCC	4 cut(s)	757, 806, 917, 971
Lsp1109I	GCAGC	7 cut(s)	265, 329, 359, 503, 590, 665, 834
LweI	GCATC	6 cut(s)	95, 223, 290, 308, 640, 664
MaeI	CTAG	2 cut(s)	135, 810
MaeII	ACGT	1 cut(s)	860
MaeIII	GTNAC	2 cut(s)	400, 644
MalI	GATC	2 cut(s)	505, 592
MboI	GATC	2 cut(s)	503, 590
MboII	GAAGA	5 cut(s)	116, 175, 448, 530, 931
MluCI	AATT	5 cut(s)	78, 213, 456, 563, 789
MlyI	GAGTC	1 cut(s)	882
MmeI	TCCRAC	3 cut(s)	25, 799, 891
MnlI	CCTC	9 cut(s)	221, 252, 320, 607, 610, 781, 835, 883, 907
Mph1103I	ATGCAT	1 cut(s)	556
MseI	TTAA	4 cut(s)	119, 380, 414, 794
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	1 cut(s)	883
MspR9I	CCNGG	4 cut(s)	129, 225, 419, 883
Mva1269I	GAATGC	1 cut(s)	556
MvaI	CCWGG	3 cut(s)	129, 225, 419
MvnI	CGCG	1 cut(s)	696
MwoI	GCNNNNNNNGC	7 cut(s)	347, 353, 362, 542, 551, 781, 926
NciI	CCSGG	1 cut(s)	883
NdeII	GATC	2 cut(s)	503, 590
NlaIII	CATG	1 cut(s)	901
NlaIV	GGNNCC	2 cut(s)	388, 967
NmuCI	GTSAC	1 cut(s)	400
NsiI	ATGCAT	1 cut(s)	556
NspV	TTCGAA	1 cut(s)	211
PctI	GAATGC	1 cut(s)	556
PfeI	GAWTC	2 cut(s)	182, 894
PflFI	GACNNNGTC	1 cut(s)	872
PkrI	GCNGC	8 cut(s)	202, 280, 319, 349, 493, 580, 655, 849
PleI	GAGTC	1 cut(s)	881
PpsI	GAGTC	1 cut(s)	881
Psp6I	CCWGG	3 cut(s)	127, 223, 417
PspGI	CCWGG	3 cut(s)	127, 223, 417
PspN4I	GGNNCC	2 cut(s)	388, 967
PstI	CTGCAG	1 cut(s)	852
PstNI	CAGNNNCTG	1 cut(s)	910
PsyI	GACNNNGTC	1 cut(s)	872
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SaqAI	TTAA	4 cut(s)	119, 380, 414, 794
SatI	GCNGC	8 cut(s)	201, 279, 318, 348, 492, 579, 654, 848
Sau3AI	GATC	2 cut(s)	503, 590
SchI	GAGTC	1 cut(s)	882
ScrFI	CCNGG	4 cut(s)	129, 225, 419, 883
SfaNI	GCATC	6 cut(s)	95, 223, 290, 308, 640, 664
SfcI	CTRYAG	1 cut(s)	848
SfuI	TTCGAA	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	5 cut(s)	78, 213, 456, 563, 789
SsiI	CCGC	4 cut(s)	57, 114, 201, 684
SspMI	CTAG	2 cut(s)	135, 810
StyD4I	CCNGG	4 cut(s)	127, 223, 417, 881
TaaI	ACNGT	5 cut(s)	43, 153, 175, 429, 601
TaiI	ACGT	1 cut(s)	863
TaqI	TCGA	5 cut(s)	6, 185, 211, 568, 593
TasI	AATT	5 cut(s)	78, 213, 456, 563, 789
TatI	WGTACW	1 cut(s)	106
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	2 cut(s)	182, 894
Tru1I	TTAA	4 cut(s)	119, 380, 414, 794
Tru9I	TTAA	4 cut(s)	119, 380, 414, 794
TscAI	CASTG	2 cut(s)	178, 786
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	7 cut(s)	278, 317, 347, 491, 578, 653, 847
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	2 cut(s)	145, 851
TspGWI	ACGGA	1 cut(s)	885
TspRI	CASTG	2 cut(s)	178, 786
Tth111I	GACNNNGTC	1 cut(s)	872
XapI	RAATTY	1 cut(s)	789
XspI	CTAG	2 cut(s)	135, 810
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.