protease
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 161 |
| AccBSI | CCGCTC | 1 cut(s) | 285 |
| AccI | GTMKAC | 2 cut(s) | 200, 954 |
| AccII | CGCG | 5 cut(s) | 45, 177, 314, 369, 405 |
| AclWI | GGATC | 2 cut(s) | 28, 995 |
| AcoI | YGGCCR | 1 cut(s) | 406 |
| AcsI | RAATTY | 4 cut(s) | 472, 509, 605, 934 |
| AcuI | CTGAAG | 3 cut(s) | 446, 1561, 1569 |
| AfaI | GTAC | 4 cut(s) | 624, 1047, 1088, 1176 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 632 |
| AgsI | TTSAA | 9 cut(s) | 52, 533, 541, 592, 973, 1023, 1030, 1516, 2020 |
| AjnI | CCWGG | 3 cut(s) | 408, 1291, 1485 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 71, 103, 1991, 2023 |
| Alw21I | GWGCWC | 1 cut(s) | 1830 |
| Alw26I | GTCTC | 3 cut(s) | 195, 1632, 1969 |
| AlwI | GGATC | 2 cut(s) | 28, 995 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1978 |
| AoxI | GGCC | 5 cut(s) | 406, 615, 723, 1266, 1995 |
| ApoI | RAATTY | 4 cut(s) | 472, 509, 605, 934 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 382, 414 |
| AseI | ATTAAT | 1 cut(s) | 942 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 323 |
| AspLEI | GCGC | 7 cut(s) | 47, 162, 179, 314, 369, 405, 1819 |
| AsuC2I | CCSGG | 1 cut(s) | 1197 |
| AsuHPI | GGTGA | 2 cut(s) | 815, 1310 |
| BanII | GRGCYC | 1 cut(s) | 1830 |
| BauI | CACGAG | 5 cut(s) | 904, 1170, 1728, 1761, 1820 |
| BbsI | GAAGAC | 3 cut(s) | 222, 580, 1184 |
| Bbv12I | GWGCWC | 1 cut(s) | 1830 |
| BccI | CCATC | 3 cut(s) | 230, 401, 2012 |
| BceAI | ACGGC | 1 cut(s) | 41 |
| BciT130I | CCWGG | 3 cut(s) | 410, 1293, 1487 |
| BciVI | GTATCC | 3 cut(s) | 199, 288, 1391 |
| BclI | TGATCA | 2 cut(s) | 418, 805 |
| BcnI | CCSGG | 1 cut(s) | 1197 |
| BcoDI | GTCTC | 3 cut(s) | 195, 1632, 1969 |
| BfaI | CTAG | 2 cut(s) | 657, 1203 |
| BfmI | CTRYAG | 2 cut(s) | 1668, 1916 |
| BfuI | GTATCC | 3 cut(s) | 199, 288, 1391 |
| BmcAI | AGTACT | 1 cut(s) | 1088 |
| Bme1390I | CCNGG | 4 cut(s) | 410, 1197, 1293, 1487 |
| BmiI | GGNNCC | 2 cut(s) | 1456, 2035 |
| BmrFI | CCNGG | 4 cut(s) | 410, 1197, 1293, 1487 |
| BmsI | GCATC | 9 cut(s) | 174, 837, 1163, 1291, 1358, 1376, 1708, 1732, 1733 |
| BpiI | GAAGAC | 3 cut(s) | 222, 580, 1184 |
| BpmI | CTGGAG | 2 cut(s) | 1314, 2000 |
| BpuEI | CTTGAG | 3 cut(s) | 767, 1075, 1769 |
| BpuMI | CCSGG | 1 cut(s) | 1197 |
| Bsa29I | ATCGAT | 3 cut(s) | 496, 1370, 1661 |
| BsaJI | CCNNGG | 3 cut(s) | 359, 1291, 1486 |
| BsaWI | WCCGGW | 1 cut(s) | 514 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1913, 1943 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 632 |
| Bse118I | RCCGGY | 2 cut(s) | 625, 800 |
| Bse1I | ACTGG | 3 cut(s) | 1456, 1714, 1983 |
| Bse3DI | GCAATG | 5 cut(s) | 348, 857, 1109, 1362, 1416 |
| BseBI | CCWGG | 3 cut(s) | 410, 1293, 1487 |
| BseCI | ATCGAT | 3 cut(s) | 496, 1370, 1661 |
| BseDI | CCNNGG | 3 cut(s) | 359, 1291, 1486 |
| BseGI | GGATG | 2 cut(s) | 895, 1275 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 632 |
| BseMI | GCAATG | 5 cut(s) | 348, 857, 1109, 1362, 1416 |
| BseMII | CTCAG | 2 cut(s) | 183, 2006 |
| BseNI | ACTGG | 3 cut(s) | 1456, 1714, 1983 |
| BseRI | GAGGAG | 1 cut(s) | 1697 |
| BsgI | GTGCAG | 1 cut(s) | 1596 |
| Bsh1236I | CGCG | 5 cut(s) | 45, 177, 314, 369, 405 |
| Bsh1285I | CGRYCG | 1 cut(s) | 496 |
| BshFI | GGCC | 5 cut(s) | 408, 617, 725, 1268, 1997 |
| BshVI | ATCGAT | 3 cut(s) | 496, 1370, 1661 |
| BsiEI | CGRYCG | 1 cut(s) | 496 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1830 |
| BsiSI | CCGG | 4 cut(s) | 515, 626, 801, 1197 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 632 |
| BsmAI | GTCTC | 3 cut(s) | 195, 1632, 1969 |
| BsmBI | CGTCTC | 1 cut(s) | 195 |
| BsmI | GAATGC | 1 cut(s) | 1624 |
| BsnI | GGCC | 5 cut(s) | 408, 617, 725, 1268, 1997 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1830 |
| Bsp143I | GATC | 8 cut(s) | 33, 243, 418, 493, 497, 805, 987, 1658 |
| BspANI | GGCC | 5 cut(s) | 408, 617, 725, 1268, 1997 |
| BspCNI | CTCAG | 2 cut(s) | 182, 2005 |
| BspDI | ATCGAT | 3 cut(s) | 496, 1370, 1661 |
| BspFNI | CGCG | 5 cut(s) | 45, 177, 314, 369, 405 |
| BspLI | GGNNCC | 2 cut(s) | 1456, 2035 |
| BspMAI | CTGCAG | 1 cut(s) | 1920 |
| BspPI | GGATC | 2 cut(s) | 28, 995 |
| BspQI | GCTCTTC | 1 cut(s) | 314 |
| BsrBI | CCGCTC | 1 cut(s) | 285 |
| BsrDI | GCAATG | 5 cut(s) | 348, 857, 1109, 1362, 1416 |
| BsrFI | RCCGGY | 2 cut(s) | 625, 800 |
| BsrI | ACTGG | 3 cut(s) | 1456, 1714, 1983 |
| BssAI | RCCGGY | 2 cut(s) | 625, 800 |
| BssECI | CCNNGG | 3 cut(s) | 359, 1291, 1486 |
| BssMI | GATC | 8 cut(s) | 33, 243, 418, 493, 497, 805, 987, 1658 |
| BssSI | CACGAG | 5 cut(s) | 904, 1170, 1728, 1761, 1820 |
| BssT1I | CCWWGG | 1 cut(s) | 359 |
| Bst2BI | CACGAG | 5 cut(s) | 904, 1170, 1728, 1761, 1820 |
| Bst2UI | CCWGG | 3 cut(s) | 410, 1293, 1487 |
| Bst4CI | ACNGT | 6 cut(s) | 718, 1111, 1221, 1497, 1599, 1669 |
| Bst6I | CTCTTC | 5 cut(s) | 92, 314, 422, 1068, 1693 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1619 |
| BstC8I | GCNNGC | 7 cut(s) | 175, 310, 344, 631, 664, 817, 1830 |
| BstDEI | CTNAG | 3 cut(s) | 169, 1605, 1992 |
| BstF5I | GGATG | 2 cut(s) | 895, 1275 |
| BstFNI | CGCG | 5 cut(s) | 45, 177, 314, 369, 405 |
| BstHHI | GCGC | 7 cut(s) | 47, 162, 179, 314, 369, 405, 1819 |
| BstKTI | GATC | 8 cut(s) | 36, 246, 421, 496, 500, 808, 990, 1661 |
| BstMAI | GTCTC | 3 cut(s) | 195, 1632, 1969 |
| BstMBI | GATC | 8 cut(s) | 33, 243, 418, 493, 497, 805, 987, 1658 |
| BstMCI | CGRYCG | 1 cut(s) | 496 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 53, 114, 343, 1415, 1610, 1619, 1825, 1994 |
| BstNI | CCWGG | 3 cut(s) | 410, 1293, 1487 |
| BstNSI | RCATGY | 1 cut(s) | 346 |
| BstSCI | CCNGG | 4 cut(s) | 408, 1195, 1291, 1485 |
| BstSFI | CTRYAG | 2 cut(s) | 1668, 1916 |
| BstUI | CGCG | 5 cut(s) | 45, 177, 314, 369, 405 |
| BstV2I | GAAGAC | 3 cut(s) | 222, 580, 1184 |
| Bsu15I | ATCGAT | 3 cut(s) | 496, 1370, 1661 |
| BsuI | GTATCC | 3 cut(s) | 199, 288, 1391 |
| BsuRI | GGCC | 5 cut(s) | 408, 617, 725, 1268, 1997 |
| BsuTUI | ATCGAT | 3 cut(s) | 496, 1370, 1661 |
| BtgZI | GCGATG | 1 cut(s) | 249 |
| BtsCI | GGATG | 2 cut(s) | 895, 1275 |
| BtsI | GCAGTG | 1 cut(s) | 1246 |
| BtsIMutI | CAGTG | 1 cut(s) | 1246 |
| Cac8I | GCNNGC | 7 cut(s) | 175, 310, 344, 631, 664, 817, 1830 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1978 |
| CfoI | GCGC | 7 cut(s) | 47, 162, 179, 314, 369, 405, 1819 |
| Cfr10I | RCCGGY | 2 cut(s) | 625, 800 |
| ClaI | ATCGAT | 3 cut(s) | 496, 1370, 1661 |
| CseI | GACGC | 3 cut(s) | 358, 373, 1855 |
| Csp6I | GTAC | 4 cut(s) | 623, 1046, 1087, 1175 |
| CviAII | CATG | 3 cut(s) | 343, 826, 1966 |
| CviQI | GTAC | 4 cut(s) | 623, 1046, 1087, 1175 |
| DdeI | CTNAG | 3 cut(s) | 169, 1605, 1992 |
| DpnI | GATC | 8 cut(s) | 35, 245, 420, 495, 499, 807, 989, 1660 |
| DpnII | GATC | 8 cut(s) | 33, 243, 418, 493, 497, 805, 987, 1658 |
| EaeI | YGGCCR | 1 cut(s) | 406 |
| Eam1104I | CTCTTC | 5 cut(s) | 92, 314, 422, 1068, 1693 |
| EarI | CTCTTC | 5 cut(s) | 92, 314, 422, 1068, 1693 |
| EciI | GGCGGA | 2 cut(s) | 110, 1767 |
| Ecl136II | GAGCTC | 1 cut(s) | 1828 |
| Eco130I | CCWWGG | 1 cut(s) | 359 |
| Eco147I | AGGCCT | 1 cut(s) | 725 |
| Eco24I | GRGCYC | 1 cut(s) | 1830 |
| Eco32I | GATATC | 1 cut(s) | 928 |
| Eco53kI | GAGCTC | 1 cut(s) | 1828 |
| Eco57I | CTGAAG | 3 cut(s) | 446, 1561, 1569 |
| EcoICRI | GAGCTC | 1 cut(s) | 1828 |
| EcoRII | CCWGG | 3 cut(s) | 408, 1291, 1485 |
| EcoRV | GATATC | 1 cut(s) | 928 |
| EcoT14I | CCWWGG | 1 cut(s) | 359 |
| EcoT22I | ATGCAT | 1 cut(s) | 1624 |
| EcoT38I | GRGCYC | 1 cut(s) | 1830 |
| ErhI | CCWWGG | 1 cut(s) | 359 |
| Esp3I | CGTCTC | 1 cut(s) | 195 |
| FaeI | CATG | 3 cut(s) | 346, 829, 1969 |
| FatI | CATG | 3 cut(s) | 342, 825, 1965 |
| FbaI | TGATCA | 2 cut(s) | 418, 805 |
| FblI | GTMKAC | 2 cut(s) | 200, 954 |
| FokI | GGATG | 2 cut(s) | 902, 1262 |
| FriOI | GRGCYC | 1 cut(s) | 1830 |
| FspBI | CTAG | 2 cut(s) | 657, 1203 |
| FspI | TGCGCA | 1 cut(s) | 161 |
| GlaI | GCGC | 7 cut(s) | 46, 161, 178, 313, 368, 404, 1818 |
| GsuI | CTGGAG | 2 cut(s) | 1314, 2000 |
| HaeIII | GGCC | 5 cut(s) | 408, 617, 725, 1268, 1997 |
| HapII | CCGG | 4 cut(s) | 515, 626, 801, 1197 |
| HgaI | GACGC | 3 cut(s) | 358, 373, 1855 |
| HhaI | GCGC | 7 cut(s) | 47, 162, 179, 314, 369, 405, 1819 |
| Hin1II | CATG | 3 cut(s) | 346, 829, 1969 |
| Hin6I | GCGC | 7 cut(s) | 45, 160, 177, 312, 367, 403, 1817 |
| HinP1I | GCGC | 7 cut(s) | 45, 160, 177, 312, 367, 403, 1817 |
| HincII | GTYRAC | 2 cut(s) | 201, 1926 |
| HindII | GTYRAC | 2 cut(s) | 201, 1926 |
| HindIII | AAGCTT | 1 cut(s) | 535 |
| HinfI | GANTC | 9 cut(s) | 185, 221, 430, 759, 951, 1234, 1250, 1941, 1962 |
| HpaII | CCGG | 4 cut(s) | 515, 626, 801, 1197 |
| HphI | GGTGA | 2 cut(s) | 815, 1310 |
| Hpy166II | GTNNAC | 5 cut(s) | 201, 446, 955, 1175, 1926 |
| Hpy188III | TCNNGA | 9 cut(s) | 301, 373, 388, 592, 746, 931, 1637, 1656, 1728 |
| Hpy8I | GTNNAC | 5 cut(s) | 201, 446, 955, 1175, 1926 |
| Hpy99I | CGWCG | 7 cut(s) | 62, 199, 202, 205, 332, 1849, 1940 |
| HpyCH4III | ACNGT | 6 cut(s) | 718, 1111, 1221, 1497, 1599, 1669 |
| HpyCH4IV | ACGT | 1 cut(s) | 1928 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 53, 114, 343, 1415, 1610, 1619, 1825, 1994 |
| HpyF3I | CTNAG | 3 cut(s) | 169, 1605, 1992 |
| HpySE526I | ACGT | 1 cut(s) | 1928 |
| Hsp92II | CATG | 3 cut(s) | 346, 829, 1969 |
| HspAI | GCGC | 7 cut(s) | 45, 160, 177, 312, 367, 403, 1817 |
| Ksp22I | TGATCA | 2 cut(s) | 418, 805 |
| Kzo9I | GATC | 8 cut(s) | 33, 243, 418, 493, 497, 805, 987, 1658 |
| LguI | GCTCTTC | 1 cut(s) | 314 |
| LmnI | GCTCC | 3 cut(s) | 342, 1825, 1985 |
| LweI | GCATC | 9 cut(s) | 174, 837, 1163, 1291, 1358, 1376, 1708, 1732, 1733 |
| MaeI | CTAG | 2 cut(s) | 657, 1203 |
| MaeII | ACGT | 1 cut(s) | 1928 |
| MaeIII | GTNAC | 2 cut(s) | 1468, 1712 |
| MalI | GATC | 8 cut(s) | 35, 245, 420, 495, 499, 807, 989, 1660 |
| MbiI | CCGCTC | 1 cut(s) | 285 |
| MboI | GATC | 8 cut(s) | 33, 243, 418, 493, 497, 805, 987, 1658 |
| MhlI | GDGCHC | 1 cut(s) | 1830 |
| MlyI | GAGTC | 4 cut(s) | 179, 439, 960, 1950 |
| MmeI | TCCRAC | 4 cut(s) | 736, 1093, 1867, 1959 |
| Mph1103I | ATGCAT | 1 cut(s) | 1624 |
| MroXI | GAANNNNTTC | 1 cut(s) | 323 |
| MseI | TTAA | 6 cut(s) | 480, 942, 1187, 1448, 1482, 1862 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1005 |
| MspA1I | CMGCKG | 2 cut(s) | 424, 1562 |
| MspI | CCGG | 4 cut(s) | 515, 626, 801, 1197 |
| MspR9I | CCNGG | 4 cut(s) | 410, 1197, 1293, 1487 |
| Mva1269I | GAATGC | 1 cut(s) | 1624 |
| MvaI | CCWGG | 3 cut(s) | 410, 1293, 1487 |
| MvnI | CGCG | 5 cut(s) | 45, 177, 314, 369, 405 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 53, 114, 343, 1415, 1610, 1619, 1825, 1994 |
| NciI | CCSGG | 1 cut(s) | 1197 |
| NdeII | GATC | 8 cut(s) | 33, 243, 418, 493, 497, 805, 987, 1658 |
| NlaIII | CATG | 3 cut(s) | 346, 829, 1969 |
| NlaIV | GGNNCC | 2 cut(s) | 1456, 2035 |
| NmuCI | GTSAC | 1 cut(s) | 1468 |
| NsbI | TGCGCA | 1 cut(s) | 161 |
| NsiI | ATGCAT | 1 cut(s) | 1624 |
| NspI | RCATGY | 1 cut(s) | 346 |
| PaeI | GCATGC | 1 cut(s) | 346 |
| PceI | AGGCCT | 1 cut(s) | 725 |
| PciSI | GCTCTTC | 1 cut(s) | 314 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 194 |
| PctI | GAATGC | 1 cut(s) | 1624 |
| PdmI | GAANNNNTTC | 1 cut(s) | 323 |
| PfeI | GAWTC | 5 cut(s) | 221, 759, 1234, 1250, 1962 |
| PflFI | GACNNNGTC | 1 cut(s) | 1940 |
| Ple19I | CGATCG | 1 cut(s) | 496 |
| PleI | GAGTC | 4 cut(s) | 179, 438, 959, 1949 |
| PpsI | GAGTC | 4 cut(s) | 179, 438, 959, 1949 |
| PshBI | ATTAAT | 1 cut(s) | 942 |
| Psp124BI | GAGCTC | 1 cut(s) | 1830 |
| Psp6I | CCWGG | 3 cut(s) | 408, 1291, 1485 |
| PspGI | CCWGG | 3 cut(s) | 408, 1291, 1485 |
| PspN4I | GGNNCC | 2 cut(s) | 1456, 2035 |
| PstI | CTGCAG | 1 cut(s) | 1920 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1978 |
| PsyI | GACNNNGTC | 1 cut(s) | 1940 |
| PvuI | CGATCG | 1 cut(s) | 496 |
| PvuII | CAGCTG | 2 cut(s) | 424, 1562 |
| RsaI | GTAC | 4 cut(s) | 624, 1047, 1088, 1176 |
| RsaNI | GTAC | 4 cut(s) | 623, 1046, 1087, 1175 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1005 |
| SacI | GAGCTC | 1 cut(s) | 1830 |
| SalI | GTCGAC | 1 cut(s) | 199 |
| SapI | GCTCTTC | 1 cut(s) | 314 |
| SaqAI | TTAA | 6 cut(s) | 480, 942, 1187, 1448, 1482, 1862 |
| Sau3AI | GATC | 8 cut(s) | 33, 243, 418, 493, 497, 805, 987, 1658 |
| ScaI | AGTACT | 1 cut(s) | 1088 |
| SchI | GAGTC | 4 cut(s) | 179, 439, 960, 1950 |
| ScrFI | CCNGG | 4 cut(s) | 410, 1197, 1293, 1487 |
| SduI | GDGCHC | 1 cut(s) | 1830 |
| SfaNI | GCATC | 9 cut(s) | 174, 837, 1163, 1291, 1358, 1376, 1708, 1732, 1733 |
| SfcI | CTRYAG | 2 cut(s) | 1668, 1916 |
| SgrDI | CGTCGACG | 1 cut(s) | 199 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1005 |
| SmlI | CTYRAG | 3 cut(s) | 746, 1090, 1784 |
| SmoI | CTYRAG | 3 cut(s) | 746, 1090, 1784 |
| SphI | GCATGC | 1 cut(s) | 346 |
| SseBI | AGGCCT | 1 cut(s) | 725 |
| SspMI | CTAG | 2 cut(s) | 657, 1203 |
| SstI | GAGCTC | 1 cut(s) | 1830 |
| StuI | AGGCCT | 1 cut(s) | 725 |
| StyD4I | CCNGG | 4 cut(s) | 408, 1195, 1291, 1485 |
| StyI | CCWWGG | 1 cut(s) | 359 |
| TaaI | ACNGT | 6 cut(s) | 718, 1111, 1221, 1497, 1599, 1669 |
| TaiI | ACGT | 1 cut(s) | 1931 |
| TatI | WGTACW | 2 cut(s) | 1045, 1086 |
| TauI | GCSGC | 4 cut(s) | 45, 288, 408, 1271 |
| TfiI | GAWTC | 5 cut(s) | 221, 759, 1234, 1250, 1962 |
| Tru1I | TTAA | 6 cut(s) | 480, 942, 1187, 1448, 1482, 1862 |
| Tru9I | TTAA | 6 cut(s) | 480, 942, 1187, 1448, 1482, 1862 |
| TscAI | CASTG | 1 cut(s) | 1246 |
| TseFI | GTSAC | 1 cut(s) | 1468 |
| Tsp45I | GTSAC | 1 cut(s) | 1468 |
| TspDTI | ATGAA | 5 cut(s) | 121, 721, 960, 1213, 1919 |
| TspGWI | ACGGA | 4 cut(s) | 183, 218, 1953, 1974 |
| TspRI | CASTG | 1 cut(s) | 1246 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1940 |
| VspI | ATTAAT | 1 cut(s) | 942 |
| XapI | RAATTY | 4 cut(s) | 472, 509, 605, 934 |
| XceI | RCATGY | 1 cut(s) | 346 |
| XmiI | GTMKAC | 2 cut(s) | 200, 954 |
| XmnI | GAANNNNTTC | 1 cut(s) | 323 |
| XspI | CTAG | 2 cut(s) | 657, 1203 |
| ZrmI | AGTACT | 1 cut(s) | 1088 |
| Zsp2I | ATGCAT | 1 cut(s) | 1624 |