RchiOBHm_Chr6g0264331

protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001220
Physical Location & Seq
Reverse (-)
19500890 .. 19501779
890 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23707

Sequence Viewer

Length: 246 bp
ATGTGGAGGGAAATCAAACTTTTGGCTGCATCAAAACCGGTCATTGCGTCAATGTCTGATGTGGCAGCAAGTGGAGGATACTATATGGCTATGGCAGCAGATGCCGTTGTTGCAGAAAATCTAACCTTAACTAGTTCCATTGGAGTTGTCACAGGGAAGTTTAACCTTGGAAAACTGTGCGAGAAGATTGGCTTCAACAAAGAAATCATATCACGGGGAAAAATTTGCAGATGTTCTTGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S49

Protein Analysis

81

Amino Acids

8.58

Weight (kDa)

9.05

Isoelectric Point (pI)

31.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S49 PF01343 8 - 74 2e-20 Peptidase family S49
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 222
AgeI ACCGGT 1 cut(s) 37
AgsI TTSAA 1 cut(s) 196
AhlI ACTAGT 1 cut(s) 131
AluBI AGCT 1 cut(s) 243
AluI AGCT 1 cut(s) 243
ApeKI GCWGC 4 cut(s) 26, 65, 95, 240
ApoI RAATTY 1 cut(s) 222
AsiGI ACCGGT 1 cut(s) 37
BbvI GCAGC 3 cut(s) 13, 77, 107
BceAI ACGGC 1 cut(s) 89
BciVI GTATCC 1 cut(s) 71
BcuI ACTAGT 1 cut(s) 131
BfaI CTAG 1 cut(s) 132
BfuI GTATCC 1 cut(s) 71
BisI GCNGC 4 cut(s) 27, 66, 96, 241
BlsI GCNGC 4 cut(s) 28, 67, 97, 242
BmsI GCATC 2 cut(s) 38, 91
BsaJI CCNNGG 1 cut(s) 166
BsaWI WCCGGW 1 cut(s) 37
Bse118I RCCGGY 1 cut(s) 37
Bse3DI GCAATG 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 166
BseMI GCAATG 1 cut(s) 42
BseXI GCAGC 3 cut(s) 13, 77, 107
BshTI ACCGGT 1 cut(s) 37
BsiSI CCGG 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 177
BstAPI GCANNNNNTGC 1 cut(s) 101
BstMWI GCNNNNNNNGC 3 cut(s) 95, 101, 110
BstV1I GCAGC 3 cut(s) 13, 77, 107
BsuI GTATCC 1 cut(s) 71
Cfr10I RCCGGY 1 cut(s) 37
CseI GACGC 1 cut(s) 36
CspAI ACCGGT 1 cut(s) 37
CviJI RGCY 4 cut(s) 26, 89, 192, 243
CviKI_1 RGCY 4 cut(s) 26, 89, 192, 243
Eco130I CCWWGG 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
FaiI YATR 4 cut(s) 84, 86, 92, 209
FalI AAGNNNNNCTT 2 cut(s) 176, 208
Fnu4HI GCNGC 4 cut(s) 27, 66, 96, 241
Fsp4HI GCNGC 4 cut(s) 27, 66, 96, 241
FspBI CTAG 1 cut(s) 132
GluI GCNGC 4 cut(s) 27, 66, 96, 241
HapII CCGG 1 cut(s) 38
HgaI GACGC 1 cut(s) 36
HpaII CCGG 1 cut(s) 38
Hpy188I TCNGA 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 177
HpyCH4V TGCA 4 cut(s) 29, 113, 228, 240
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 101, 110
LpnPI CCDG 2 cut(s) 51, 138
Lsp1109I GCAGC 3 cut(s) 13, 77, 107
LweI GCATC 2 cut(s) 38, 91
MaeI CTAG 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 148
MboII GAAGA 1 cut(s) 196
MluCI AATT 1 cut(s) 222
MnlI CCTC 1 cut(s) 68
MseI TTAA 2 cut(s) 128, 162
MspA1I CMGCKG 1 cut(s) 243
MspI CCGG 1 cut(s) 38
MwoI GCNNNNNNNGC 3 cut(s) 95, 101, 110
NmuCI GTSAC 1 cut(s) 148
PinAI ACCGGT 1 cut(s) 37
PkrI GCNGC 4 cut(s) 28, 67, 97, 242
PvuII CAGCTG 1 cut(s) 243
SaqAI TTAA 2 cut(s) 128, 162
SatI GCNGC 4 cut(s) 27, 66, 96, 241
SetI ASST 3 cut(s) 128, 168, 245
SfaNI GCATC 2 cut(s) 38, 91
SgeI CNNG 8 cut(s) 50, 81, 144, 165, 179, 193, 225, 227
SpeI ACTAGT 1 cut(s) 131
Sse9I AATT 1 cut(s) 222
SspMI CTAG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 1 cut(s) 177
TasI AATT 1 cut(s) 222
Tru1I TTAA 2 cut(s) 128, 162
Tru9I TTAA 2 cut(s) 128, 162
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 4 cut(s) 26, 65, 95, 240
Tsp45I GTSAC 1 cut(s) 148
XapI RAATTY 1 cut(s) 222
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.