Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002074

Physical Location & Seq

Genomic Coordinates Reverse (-)

52608204 .. 52610382

Gene Structure 2179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25977

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGAGACAGAGCTCAGGCTAGGGTTGCCCGGAGGAGGAGGAGGAGGTGGTGAAGGAGAAGATCAGGTGGTGGTGATGATGAGGAAGAGAGGCTTCTCTGAAACCGAGAGTGAGATCACTACTGATGATGAGAGCAGCACTTGTGTGGATTTGAAGCTGAAACTTTCTTCCAAGGATGGTAGCAGCAGCACTAATGAAAAGTCCAAGAGCTTGATGATGAACAAGAACAAGGAGAAGAACATGGATCTTCCCGCCGATCCTGCAAAGCCTCCGGCCAAGGCACAAGTAGTGGGTTGGCCGCCGGTGAGATCCTTCCGGAAGAACATGTTGAGCGCACAGAAGAGCAGTTCTACTGATGAAAGCAAGGCTGGAGGAAATGCAGCTTTGGTGAAGGTGAGCATGGATGGTGCGCCTTACCTCCGAAAGGTCGACCTGAACATGTACAAGACTTACCCTCAGCTCTCCGACGCCCTAGCCAAAATGTTCAGCTCGTTCACCATTGGTAACTGTGGATCCCAAGGAACGATTGATTTCATGAATGAGAGGAAGCTGATGGATCTTCTCAATGATTCTGATTACATCCCAACTTATGAAGACAAGGACGGTGACTGGATGCTTGTTGGTGATGTCCCGTGGGAGATGTTTGTTGAATCATGCAAGAGACTGCGCATAATGAAGGGAAAGGAGGCTGTTGGACTCGCACCAAGAGCCATGGAGAAATGCAAGAACAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

245

Amino Acids

26.91

Weight (kDa)

6.46

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	2 - 236	5.3e-85	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04250 AT3G23050 AT3G23050 AT3G23050 AT4G14550 AT4G14550 AT4G14550 AT4G14550
fragaria_vesca	FvH4_2g22520 FvH4_4g02280 FvH4_4g02280 FvH4_4g02280
malus_domestica	MD05G1205800.v1.1 MD10G1192900.v1.1 MD13G1205000.v1.1 MD16G1206700.v1.1
prunus_persica	Prupe.1G027600_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1
pyrus_communis	pycom05g19190 pycom13g17780 pycom16g17370
rosa_chinensis	RchiOBHm_Chr4g0389621 RchiOBHm_Chr6g0289571
rosa_laevigata	RLG00000009966 RLG00000012292
rosa_multiflora	Rmu_co8206274.1_g000001 Rmu_sc0001527.1_g000060 Rmu_sc0007419.1_g000003 Rmu_sc0033355.1_g000001 Rmu_sc0033356.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335610 Rroxscaffold_7G00177850
rosa_rugosa	Rorug03G0324200 Rorug06G0204600
rosa_samantha	Rh4AG029000 Rh4BG022200 Rh4CG031000 Rh4DG022700 Rh6BG322600 Rh6CG329200
rosa_wichuraiana	Rw4G002160 Rw6G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	668
AccI	GTMKAC	1 cut(s)	429
AccIII	TCCGGA	1 cut(s)	315
AciI	CCGC	2 cut(s)	252, 299
AclWI	GGATC	6 cut(s)	251, 252, 303, 507, 520, 564
AcoI	YGGCCR	2 cut(s)	273, 296
AcyI	GRCGYC	1 cut(s)	468
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	2 cut(s)	35, 424
AflIII	ACRYGT	2 cut(s)	324, 438
AgsI	TTSAA	2 cut(s)	154, 650
AleI	CACNNNNGTG	1 cut(s)	143
AluBI	AGCT	8 cut(s)	13, 157, 210, 383, 460, 489, 550, 735
AluI	AGCT	8 cut(s)	13, 157, 210, 383, 460, 489, 550, 735
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	655
AlwI	GGATC	6 cut(s)	251, 252, 303, 507, 520, 564
AlwNI	CAGNNNCTG	1 cut(s)	735
Aor13HI	TCCGGA	1 cut(s)	315
AoxI	GGCC	2 cut(s)	273, 296
ApeKI	GCWGC	4 cut(s)	135, 183, 186, 380
AspLEI	GCGC	3 cut(s)	335, 412, 669
AsuC2I	CCSGG	1 cut(s)	30
AsuHPI	GGTGA	8 cut(s)	62, 85, 316, 400, 406, 487, 617, 635
BamHI	GGATCC	1 cut(s)	512
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	600
Bbv12I	GWGCWC	1 cut(s)	15
BbvCI	CCTCAGC	1 cut(s)	456
BbvI	GCAGC	4 cut(s)	147, 195, 198, 392
BccI	CCATC	3 cut(s)	170, 398, 547
BcnI	CCSGG	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	655
BfaI	CTAG	2 cut(s)	20, 473
BisI	GCNGC	5 cut(s)	136, 184, 187, 299, 381
BlsI	GCNGC	5 cut(s)	137, 185, 188, 300, 382
Bme1390I	CCNGG	1 cut(s)	30
BmiI	GGNNCC	1 cut(s)	514
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	603
BpiI	GAAGAC	1 cut(s)	600
BpmI	CTGGAG	1 cut(s)	390
Bpu10I	CCTNAGC	2 cut(s)	14, 456
BpuMI	CCSGG	1 cut(s)	30
BsaHI	GRCGYC	1 cut(s)	468
BsaJI	CCNNGG	5 cut(s)	171, 276, 517, 632, 711
BsaWI	WCCGGW	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 424
Bse118I	RCCGGY	1 cut(s)	301
Bse1I	ACTGG	1 cut(s)	614
BseAI	TCCGGA	1 cut(s)	315
BseDI	CCNNGG	5 cut(s)	171, 276, 517, 632, 711
BseGI	GGATG	4 cut(s)	181, 409, 579, 618
BseLI	CCNNNNNNNGG	2 cut(s)	35, 424
BseMII	CTCAG	2 cut(s)	28, 470
BseNI	ACTGG	1 cut(s)	614
BseRI	GAGGAG	4 cut(s)	48, 51, 54, 57
BseXI	GCAGC	4 cut(s)	147, 195, 198, 392
BshFI	GGCC	2 cut(s)	275, 298
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	4 cut(s)	30, 272, 302, 316
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	2 cut(s)	35, 424
BsmAI	GTCTC	1 cut(s)	655
BsmFI	GGGAC	1 cut(s)	614
BsnI	GGCC	2 cut(s)	275, 298
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	315
Bsp1407I	TGTACA	1 cut(s)	441
Bsp143I	GATC	7 cut(s)	61, 114, 244, 256, 308, 512, 556
Bsp19I	CCATGG	1 cut(s)	711
BspACI	CCGC	2 cut(s)	252, 299
BspANI	GGCC	2 cut(s)	275, 298
BspCNI	CTCAG	2 cut(s)	27, 469
BspEI	TCCGGA	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	534
BspLI	GGNNCC	1 cut(s)	514
BspPI	GGATC	6 cut(s)	251, 252, 303, 507, 520, 564
BspQI	GCTCTTC	1 cut(s)	335
BsrFI	RCCGGY	1 cut(s)	301
BsrGI	TGTACA	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	614
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	5 cut(s)	171, 276, 517, 632, 711
BssMI	GATC	7 cut(s)	61, 114, 244, 256, 308, 512, 556
BssNI	GRCGYC	1 cut(s)	468
BssT1I	CCWWGG	4 cut(s)	171, 276, 517, 711
Bst4CI	ACNGT	2 cut(s)	509, 605
Bst6I	CTCTTC	2 cut(s)	80, 335
BstACI	GRCGYC	1 cut(s)	468
BstAUI	TGTACA	1 cut(s)	441
BstDEI	CTNAG	2 cut(s)	14, 456
BstDSI	CCRYGG	2 cut(s)	632, 711
BstENI	CCTNNNNNAGG	1 cut(s)	422
BstF5I	GGATG	4 cut(s)	181, 409, 579, 618
BstHHI	GCGC	3 cut(s)	335, 412, 669
BstKTI	GATC	7 cut(s)	64, 117, 247, 259, 311, 515, 559
BstMAI	GTCTC	1 cut(s)	655
BstMBI	GATC	7 cut(s)	61, 114, 244, 256, 308, 512, 556
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 260, 707
BstNSI	RCATGY	2 cut(s)	328, 442
BstSCI	CCNGG	1 cut(s)	28
BstV1I	GCAGC	4 cut(s)	147, 195, 198, 392
BstV2I	GAAGAC	1 cut(s)	600
BstX2I	RGATCY	4 cut(s)	244, 308, 512, 556
BstYI	RGATCY	4 cut(s)	244, 308, 512, 556
BsuRI	GGCC	2 cut(s)	275, 298
BtgI	CCRYGG	2 cut(s)	632, 711
BtsCI	GGATG	4 cut(s)	181, 409, 579, 618
CaiI	CAGNNNCTG	1 cut(s)	735
CciI	TCATGA	1 cut(s)	534
CfoI	GCGC	3 cut(s)	335, 412, 669
Cfr10I	RCCGGY	1 cut(s)	301
CseI	GACGC	1 cut(s)	476
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	7 cut(s)	241, 325, 400, 439, 535, 654, 712
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	2 cut(s)	14, 456
DpnI	GATC	7 cut(s)	63, 116, 246, 258, 310, 514, 558
DpnII	GATC	7 cut(s)	61, 114, 244, 256, 308, 512, 556
EaeI	YGGCCR	2 cut(s)	273, 296
Eam1104I	CTCTTC	2 cut(s)	80, 335
EarI	CTCTTC	2 cut(s)	80, 335
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	4 cut(s)	171, 276, 517, 711
Eco24I	GRGCYC	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoNI	CCTNNNNNAGG	1 cut(s)	422
EcoT14I	CCWWGG	4 cut(s)	171, 276, 517, 711
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	4 cut(s)	171, 276, 517, 711
FaeI	CATG	7 cut(s)	244, 328, 403, 442, 538, 657, 715
FaiI	YATR	9 cut(s)	242, 326, 401, 440, 536, 591, 655, 671, 713
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	7 cut(s)	240, 324, 399, 438, 534, 653, 711
FauI	CCCGC	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	5 cut(s)	136, 184, 187, 299, 381
FokI	GGATG	4 cut(s)	188, 416, 566, 625
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	5 cut(s)	136, 184, 187, 299, 381
FspBI	CTAG	2 cut(s)	20, 473
FspI	TGCGCA	1 cut(s)	668
GlaI	GCGC	3 cut(s)	334, 411, 668
GluI	GCNGC	5 cut(s)	136, 184, 187, 299, 381
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	2 cut(s)	275, 298
HapII	CCGG	4 cut(s)	30, 272, 302, 316
HgaI	GACGC	1 cut(s)	476
HhaI	GCGC	3 cut(s)	335, 412, 669
Hin1I	GRCGYC	1 cut(s)	468
Hin1II	CATG	7 cut(s)	244, 328, 403, 442, 538, 657, 715
Hin6I	GCGC	3 cut(s)	333, 410, 667
HinP1I	GCGC	3 cut(s)	333, 410, 667
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	3 cut(s)	569, 650, 696
HpaII	CCGG	4 cut(s)	30, 272, 302, 316
HphI	GGTGA	8 cut(s)	62, 85, 316, 400, 406, 487, 617, 635
Hpy166II	GTNNAC	2 cut(s)	430, 495
Hpy188I	TCNGA	4 cut(s)	100, 422, 466, 574
Hpy188III	TCNNGA	2 cut(s)	316, 535
Hpy8I	GTNNAC	2 cut(s)	430, 495
Hpy99I	CGWCG	1 cut(s)	470
HpyAV	CCTTC	4 cut(s)	47, 322, 385, 670
HpyCH4III	ACNGT	2 cut(s)	509, 605
HpyCH4V	TGCA	4 cut(s)	263, 380, 657, 723
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 260, 707
HpyF3I	CTNAG	2 cut(s)	14, 456
Hsp92I	GRCGYC	1 cut(s)	468
Hsp92II	CATG	7 cut(s)	244, 328, 403, 442, 538, 657, 715
HspAI	GCGC	3 cut(s)	333, 410, 667
Kpn2I	TCCGGA	1 cut(s)	315
Kzo9I	GATC	7 cut(s)	61, 114, 244, 256, 308, 512, 556
LguI	GCTCTTC	1 cut(s)	335
LpnPI	CCDG	9 cut(s)	43, 50, 273, 285, 315, 329, 354, 446, 595
Lsp1109I	GCAGC	4 cut(s)	147, 195, 198, 392
LweI	GCATC	1 cut(s)	603
MaeI	CTAG	2 cut(s)	20, 473
MaeIII	GTNAC	2 cut(s)	503, 605
MalI	GATC	7 cut(s)	63, 116, 246, 258, 310, 514, 558
MboI	GATC	7 cut(s)	61, 114, 244, 256, 308, 512, 556
MboII	GAAGA	9 cut(s)	71, 97, 159, 239, 247, 331, 352, 551, 605
MflI	RGATCY	4 cut(s)	244, 308, 512, 556
MhlI	GDGCHC	1 cut(s)	15
MlyI	GAGTC	1 cut(s)	690
MmeI	TCCRAC	2 cut(s)	489, 673
MroI	TCCGGA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	143
MspI	CCGG	4 cut(s)	30, 272, 302, 316
MspR9I	CCNGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	25, 260, 707
NciI	CCSGG	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	711
NdeII	GATC	7 cut(s)	61, 114, 244, 256, 308, 512, 556
NlaIII	CATG	7 cut(s)	244, 328, 403, 442, 538, 657, 715
NlaIV	GGNNCC	1 cut(s)	514
NmuCI	GTSAC	1 cut(s)	605
NsbI	TGCGCA	1 cut(s)	668
NspI	RCATGY	2 cut(s)	328, 442
OliI	CACNNNNGTG	1 cut(s)	143
PagI	TCATGA	1 cut(s)	534
PciI	ACATGT	2 cut(s)	324, 438
PciSI	GCTCTTC	1 cut(s)	335
PfeI	GAWTC	2 cut(s)	569, 650
PkrI	GCNGC	5 cut(s)	137, 185, 188, 300, 382
PleI	GAGTC	1 cut(s)	690
PpsI	GAGTC	1 cut(s)	690
PscI	ACATGT	2 cut(s)	324, 438
Psp124BI	GAGCTC	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	514
PstNI	CAGNNNCTG	1 cut(s)	735
PsuI	RGATCY	4 cut(s)	244, 308, 512, 556
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
RseI	CAYNNNNRTG	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	15
SalI	GTCGAC	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	335
SatI	GCNGC	5 cut(s)	136, 184, 187, 299, 381
Sau3AI	GATC	7 cut(s)	61, 114, 244, 256, 308, 512, 556
SchI	GAGTC	1 cut(s)	690
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	15
SfaNI	GCATC	1 cut(s)	603
SgrAI	CRCCGGYG	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	143
SsiI	CCGC	2 cut(s)	252, 299
SspMI	CTAG	2 cut(s)	20, 473
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	4 cut(s)	171, 276, 517, 711
TaaI	ACNGT	2 cut(s)	509, 605
TaqI	TCGA	1 cut(s)	429
TatI	WGTACW	1 cut(s)	441
TauI	GCSGC	1 cut(s)	301
TfiI	GAWTC	2 cut(s)	569, 650
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	4 cut(s)	135, 183, 186, 380
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	7 cut(s)	210, 233, 372, 523, 551, 606, 689
XagI	CCTNNNNNAGG	1 cut(s)	422
XceI	RCATGY	2 cut(s)	328, 442
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	2 cut(s)	20, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.