Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8206274.1

Orthogroup ID

OG0002074

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 570

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8206274.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

tacttcttcagggcacaagttgtcggttggccaccagtgcgctcctacagaaagaacgttatggcgcagaaaagcaccggcgaggagagcagtactactactgagaaggctgcattcgtgaaggtttgcatggatggtgcaccctatcttcgtaaggtggatttgaagatgtacaagagctacaaggagctatctgatgccttgtccaagatgttcagctccttcaccatgggttactatggggcccaaggaatgatagacttcatgaatgagagcaagttgatggatcttctgaacagtactgagtatgtgccgacctatgaagataaggatggagactggatgcttgtgggtgatgttccatgggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009753 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010101 GO:0010102 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048518 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

123

Amino Acids

14.16

Weight (kDa)

5.21

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04250 AT3G23050 AT3G23050 AT3G23050 AT4G14550 AT4G14550 AT4G14550 AT4G14550
fragaria_vesca	FvH4_2g22520 FvH4_4g02280 FvH4_4g02280 FvH4_4g02280
malus_domestica	MD05G1205800.v1.1 MD10G1192900.v1.1 MD13G1205000.v1.1 MD16G1206700.v1.1
prunus_persica	Prupe.1G027600_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1
pyrus_communis	pycom05g19190 pycom13g17780 pycom16g17370
rosa_chinensis	RchiOBHm_Chr4g0389621 RchiOBHm_Chr6g0289571
rosa_laevigata	RLG00000009966 RLG00000012292
rosa_multiflora	Rmu_co8206274.1_g000001 Rmu_sc0001527.1_g000060 Rmu_sc0007419.1_g000003 Rmu_sc0033355.1_g000001 Rmu_sc0033356.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335610 Rroxscaffold_7G00177850
rosa_rugosa	Rorug03G0324200 Rorug06G0204600
rosa_samantha	Rh4AG029000 Rh4BG022200 Rh4CG031000 Rh4DG022700 Rh6BG322600 Rh6CG329200
rosa_wichuraiana	Rw4G002160 Rw6G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	57
AclWI	GGATC	1 cut(s)	294
AcoI	YGGCCR	1 cut(s)	29
AfaI	GTAC	3 cut(s)	94, 173, 301
AgsI	TTSAA	1 cut(s)	166
AluBI	AGCT	3 cut(s)	180, 190, 219
AluI	AGCT	3 cut(s)	180, 190, 219
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	330
Alw44I	GTGCAC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	294
AoxI	GGCC	2 cut(s)	29, 243
ApaI	GGGCCC	1 cut(s)	247
ApaLI	GTGCAC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	110
AspLEI	GCGC	2 cut(s)	42, 67
AspS9I	GGNCC	2 cut(s)	243, 244
AsuHPI	GGTGA	2 cut(s)	217, 365
BaeGI	GKGCMC	3 cut(s)	16, 142, 247
BalI	TGGCCA	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	3 cut(s)	128, 277, 326
BcoDI	GTCTC	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	46
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
BmcAI	AGTACT	2 cut(s)	94, 301
BmgT120I	GGNCC	2 cut(s)	243, 244
BmiI	GGNNCC	2 cut(s)	244, 245
BmsI	GCATC	2 cut(s)	187, 333
BsaJI	CCNNGG	3 cut(s)	228, 247, 362
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	2 cut(s)	35, 344
BseDI	CCNNGG	3 cut(s)	228, 247, 362
BseGI	GGATG	3 cut(s)	139, 337, 348
BseMII	CTCAG	2 cut(s)	93, 294
BseNI	ACTGG	2 cut(s)	35, 344
BseRI	GAGGAG	1 cut(s)	98
BseSI	GKGCMC	3 cut(s)	16, 142, 247
BseXI	GCAGC	1 cut(s)	97
BshFI	GGCC	2 cut(s)	31, 245
BsiHKAI	GWGCWC	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	330
BsmI	GAATGC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	31, 245
Bsp120I	GGGCCC	1 cut(s)	243
Bsp1286I	GDGCHC	3 cut(s)	16, 142, 247
Bsp1407I	TGTACA	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	286
Bsp19I	CCATGG	2 cut(s)	228, 362
BspANI	GGCC	2 cut(s)	31, 245
BspCNI	CTCAG	2 cut(s)	94, 295
BspHI	TCATGA	1 cut(s)	264
BspLI	GGNNCC	2 cut(s)	244, 245
BspPI	GGATC	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	171
BsrI	ACTGG	2 cut(s)	35, 344
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	3 cut(s)	228, 247, 362
BssMI	GATC	1 cut(s)	286
BssT1I	CCWWGG	3 cut(s)	228, 247, 362
Bst4CI	ACNGT	1 cut(s)	299
BstAUI	TGTACA	1 cut(s)	171
BstDEI	CTNAG	2 cut(s)	102, 303
BstDSI	CCRYGG	2 cut(s)	228, 362
BstF5I	GGATG	3 cut(s)	139, 337, 348
BstHHI	GCGC	2 cut(s)	42, 67
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 87
BstSFI	CTRYAG	1 cut(s)	46
BstSLI	GKGCMC	3 cut(s)	16, 142, 247
BstV1I	GCAGC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	31, 245
BtgI	CCRYGG	2 cut(s)	228, 362
BtsCI	GGATG	3 cut(s)	139, 337, 348
BtsIMutI	CAGTG	1 cut(s)	42
CciI	TCATGA	1 cut(s)	264
CfoI	GCGC	2 cut(s)	42, 67
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	2 cut(s)	243, 244
Csp6I	GTAC	3 cut(s)	93, 172, 300
CviAII	CATG	4 cut(s)	130, 229, 265, 363
CviJI	RGCY	6 cut(s)	31, 110, 180, 190, 219, 245
CviKI_1	RGCY	6 cut(s)	31, 110, 180, 190, 219, 245
CviQI	GTAC	3 cut(s)	93, 172, 300
DdeI	CTNAG	2 cut(s)	102, 303
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	29
Eco130I	CCWWGG	3 cut(s)	228, 247, 362
Eco24I	GRGCYC	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	243
EcoT14I	CCWWGG	3 cut(s)	228, 247, 362
EcoT38I	GRGCYC	1 cut(s)	247
ErhI	CCWWGG	3 cut(s)	228, 247, 362
FaeI	CATG	4 cut(s)	133, 232, 268, 366
FaiI	YATR	8 cut(s)	62, 131, 230, 240, 266, 309, 321, 364
FatI	CATG	4 cut(s)	129, 228, 264, 362
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	3 cut(s)	146, 344, 355
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	1 cut(s)	111
GlaI	GCGC	2 cut(s)	41, 66
GluI	GCNGC	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	31, 245
HapII	CCGG	1 cut(s)	78
HhaI	GCGC	2 cut(s)	42, 67
Hin1II	CATG	4 cut(s)	133, 232, 268, 366
Hin6I	GCGC	2 cut(s)	40, 65
HinP1I	GCGC	2 cut(s)	40, 65
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	2 cut(s)	217, 365
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	2 cut(s)	196, 294
Hpy188III	TCNNGA	2 cut(s)	118, 265
Hpy8I	GTNNAC	1 cut(s)	140
HpyAV	CCTTC	3 cut(s)	100, 115, 232
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	3 cut(s)	113, 129, 140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 87
HpyF3I	CTNAG	2 cut(s)	102, 303
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	4 cut(s)	133, 232, 268, 366
HspAI	GCGC	2 cut(s)	40, 65
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	3 cut(s)	47, 187, 224
LpnPI	CCDG	3 cut(s)	48, 91, 325
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	2 cut(s)	187, 333
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	4 cut(s)	140, 178, 281, 335
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	3 cut(s)	16, 142, 247
MlsI	TGGCCA	1 cut(s)	31
MluNI	TGGCCA	1 cut(s)	31
MnlI	CCTC	1 cut(s)	76
Mox20I	TGGCCA	1 cut(s)	31
MscI	TGGCCA	1 cut(s)	31
Msp20I	TGGCCA	1 cut(s)	31
MspI	CCGG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	113
MwoI	GCNNNNNNNGC	2 cut(s)	37, 87
NcoI	CCATGG	2 cut(s)	228, 362
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	4 cut(s)	133, 232, 268, 366
NlaIV	GGNNCC	2 cut(s)	244, 245
PagI	TCATGA	1 cut(s)	264
PctI	GAATGC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	112
Psp1406I	AACGTT	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	244, 245
PspOMI	GGGCCC	1 cut(s)	243
PspPI	GGNCC	2 cut(s)	243, 244
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	3 cut(s)	94, 173, 301
RsaNI	GTAC	3 cut(s)	93, 172, 300
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	2 cut(s)	243, 244
ScaI	AGTACT	2 cut(s)	94, 301
SduI	GDGCHC	3 cut(s)	16, 142, 247
SetI	ASST	7 cut(s)	60, 126, 159, 182, 192, 221, 320
SfaNI	GCATC	2 cut(s)	187, 333
SfcI	CTRYAG	1 cut(s)	46
SgrAI	CRCCGGYG	1 cut(s)	77
StyI	CCWWGG	3 cut(s)	228, 247, 362
TaaI	ACNGT	1 cut(s)	299
TaiI	ACGT	1 cut(s)	60
TatI	WGTACW	3 cut(s)	92, 171, 299
TscAI	CASTG	1 cut(s)	42
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	3 cut(s)	253, 281, 336
TspRI	CASTG	1 cut(s)	42
VneI	GTGCAC	1 cut(s)	138
ZrmI	AGTACT	2 cut(s)	94, 301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.