Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002074

Physical Location & Seq

Genomic Coordinates Forward (+)

17211467 .. 17213039

Gene Structure 1573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012292

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAGACAGAGCTCAGGCTAGGGTTGCCCGGAGGAGGAGGAGGTGGTGAAGGAGAAGATCAGGTGGTGGTGATGATGAGGAAGAGAGGCTTCTCTGAAACCGAGAGTGAGATCACTACTGATGATGAGAGCAGCACTTGTGTGGATTTGAAGCTGAAACTATCTTCCAAGGATGGTAGCAGCAGCACTAATGAAAAGTCCAAGAGCTTGATGATGAACAAGAACAAGGAGAAGAACATGGATCTTCCCGCCGATCCGGCAAAGCCTCCGGCCAAGGCACAAGTAGTGGGTTGGCCCCCGGTGAGATCCTTCCGGAAGAACATGTTGAGCGCACAGAAGATCAGTTCTACTGATGAAAGCAAGGCTGGAGGAAATGCAGCTTTGGTGAAGGTGAGCATGGATGGTGCGCCTTACCTCCGAAAGGTCGACCTGAACATGTACAAGACTTACCCTCAGCTCTCCGACGCCCTAGCCAAAATGTTCAGCTCGTTCACCATTGGTAACTGTGGATCCCAAGGAACGATTGATTTCATGAATGAGAGGAAGCTGATGGATCTTCTCAATGATTCTGATTACATCCCAACTTATGAAGACAAGGACGGTGACTGGATGCTTGTTGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGAGACTGCGCATAATGAAGGGAAAGGAGGCTGTTGGACTCGCACCAAGAGCCATGGAGAAATGCAAGAACAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

245

Amino Acids

26.88

Weight (kDa)

6.46

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	2 - 235	1.7e-84	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04250 AT3G23050 AT3G23050 AT3G23050 AT4G14550 AT4G14550 AT4G14550 AT4G14550
fragaria_vesca	FvH4_2g22520 FvH4_4g02280 FvH4_4g02280 FvH4_4g02280
malus_domestica	MD05G1205800.v1.1 MD10G1192900.v1.1 MD13G1205000.v1.1 MD16G1206700.v1.1
prunus_persica	Prupe.1G027600_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1
pyrus_communis	pycom05g19190 pycom13g17780 pycom16g17370
rosa_chinensis	RchiOBHm_Chr4g0389621 RchiOBHm_Chr6g0289571
rosa_laevigata	RLG00000009966 RLG00000012292
rosa_multiflora	Rmu_co8206274.1_g000001 Rmu_sc0001527.1_g000060 Rmu_sc0007419.1_g000003 Rmu_sc0033355.1_g000001 Rmu_sc0033356.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335610 Rroxscaffold_7G00177850
rosa_rugosa	Rorug03G0324200 Rorug06G0204600
rosa_samantha	Rh4AG029000 Rh4BG022200 Rh4CG031000 Rh4DG022700 Rh6BG322600 Rh6CG329200
rosa_wichuraiana	Rw4G002160 Rw6G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	665
AccI	GTMKAC	1 cut(s)	426
AccIII	TCCGGA	1 cut(s)	312
AciI	CCGC	1 cut(s)	249
AclWI	GGATC	6 cut(s)	248, 249, 300, 504, 517, 561
AcoI	YGGCCR	1 cut(s)	270
AcyI	GRCGYC	1 cut(s)	465
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	2 cut(s)	35, 421
AflIII	ACRYGT	2 cut(s)	321, 435
AgsI	TTSAA	2 cut(s)	151, 647
AleI	CACNNNNGTG	1 cut(s)	140
AluBI	AGCT	8 cut(s)	13, 154, 207, 380, 457, 486, 547, 732
AluI	AGCT	8 cut(s)	13, 154, 207, 380, 457, 486, 547, 732
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	652
AlwI	GGATC	6 cut(s)	248, 249, 300, 504, 517, 561
AlwNI	CAGNNNCTG	1 cut(s)	732
Aor13HI	TCCGGA	1 cut(s)	312
AoxI	GGCC	2 cut(s)	270, 293
ApeKI	GCWGC	4 cut(s)	132, 180, 183, 377
AspLEI	GCGC	3 cut(s)	332, 409, 666
AspS9I	GGNCC	1 cut(s)	294
AsuC2I	CCSGG	2 cut(s)	30, 299
AsuHPI	GGTGA	8 cut(s)	59, 82, 313, 397, 403, 484, 614, 632
BamHI	GGATCC	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	15
BbvCI	CCTCAGC	1 cut(s)	453
BbvI	GCAGC	4 cut(s)	144, 192, 195, 389
BccI	CCATC	3 cut(s)	167, 395, 544
BcnI	CCSGG	2 cut(s)	30, 299
BcoDI	GTCTC	1 cut(s)	652
BfaI	CTAG	2 cut(s)	20, 470
BglI	GCCNNNNNGGC	1 cut(s)	257
BisI	GCNGC	4 cut(s)	133, 181, 184, 378
BlsI	GCNGC	4 cut(s)	134, 182, 185, 379
Bme1390I	CCNGG	2 cut(s)	30, 299
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	2 cut(s)	296, 511
BmrFI	CCNGG	2 cut(s)	30, 299
BmsI	GCATC	1 cut(s)	600
BpiI	GAAGAC	1 cut(s)	597
BpmI	CTGGAG	1 cut(s)	387
Bpu10I	CCTNAGC	2 cut(s)	14, 453
BpuMI	CCSGG	2 cut(s)	30, 299
BsaHI	GRCGYC	1 cut(s)	465
BsaJI	CCNNGG	6 cut(s)	168, 273, 297, 514, 629, 708
BsaWI	WCCGGW	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 421
Bse1I	ACTGG	1 cut(s)	611
BseAI	TCCGGA	1 cut(s)	312
BseDI	CCNNGG	6 cut(s)	168, 273, 297, 514, 629, 708
BseGI	GGATG	4 cut(s)	178, 406, 576, 615
BseLI	CCNNNNNNNGG	2 cut(s)	35, 421
BseMII	CTCAG	2 cut(s)	28, 467
BseNI	ACTGG	1 cut(s)	611
BseRI	GAGGAG	3 cut(s)	48, 51, 54
BseXI	GCAGC	4 cut(s)	144, 192, 195, 389
BshFI	GGCC	2 cut(s)	272, 295
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	5 cut(s)	30, 257, 269, 299, 313
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	2 cut(s)	35, 421
BsmAI	GTCTC	1 cut(s)	652
BsmFI	GGGAC	1 cut(s)	611
BsnI	GGCC	2 cut(s)	272, 295
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	312
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	8 cut(s)	58, 111, 241, 253, 305, 339, 509, 553
Bsp19I	CCATGG	2 cut(s)	629, 708
BspACI	CCGC	1 cut(s)	249
BspANI	GGCC	2 cut(s)	272, 295
BspCNI	CTCAG	2 cut(s)	27, 466
BspEI	TCCGGA	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	531
BspLI	GGNNCC	2 cut(s)	296, 511
BspPI	GGATC	6 cut(s)	248, 249, 300, 504, 517, 561
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	611
BssECI	CCNNGG	6 cut(s)	168, 273, 297, 514, 629, 708
BssMI	GATC	8 cut(s)	58, 111, 241, 253, 305, 339, 509, 553
BssNI	GRCGYC	1 cut(s)	465
BssT1I	CCWWGG	5 cut(s)	168, 273, 514, 629, 708
Bst4CI	ACNGT	2 cut(s)	506, 602
Bst6I	CTCTTC	1 cut(s)	77
BstACI	GRCGYC	1 cut(s)	465
BstAUI	TGTACA	1 cut(s)	438
BstDEI	CTNAG	2 cut(s)	14, 453
BstDSI	CCRYGG	2 cut(s)	629, 708
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	4 cut(s)	178, 406, 576, 615
BstHHI	GCGC	3 cut(s)	332, 409, 666
BstKTI	GATC	8 cut(s)	61, 114, 244, 256, 308, 342, 512, 556
BstMAI	GTCTC	1 cut(s)	652
BstMBI	GATC	8 cut(s)	58, 111, 241, 253, 305, 339, 509, 553
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 257, 704
BstNSI	RCATGY	2 cut(s)	325, 439
BstSCI	CCNGG	2 cut(s)	28, 297
BstV1I	GCAGC	4 cut(s)	144, 192, 195, 389
BstV2I	GAAGAC	1 cut(s)	597
BstX2I	RGATCY	4 cut(s)	241, 305, 509, 553
BstYI	RGATCY	4 cut(s)	241, 305, 509, 553
BsuRI	GGCC	2 cut(s)	272, 295
BtgI	CCRYGG	2 cut(s)	629, 708
BtsCI	GGATG	4 cut(s)	178, 406, 576, 615
CaiI	CAGNNNCTG	1 cut(s)	732
CciI	TCATGA	1 cut(s)	531
CfoI	GCGC	3 cut(s)	332, 409, 666
Cfr13I	GGNCC	1 cut(s)	294
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	8 cut(s)	238, 322, 397, 436, 532, 630, 651, 709
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	2 cut(s)	14, 453
DpnI	GATC	8 cut(s)	60, 113, 243, 255, 307, 341, 511, 555
DpnII	GATC	8 cut(s)	58, 111, 241, 253, 305, 339, 509, 553
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	5 cut(s)	168, 273, 514, 629, 708
Eco24I	GRGCYC	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoT14I	CCWWGG	5 cut(s)	168, 273, 514, 629, 708
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	5 cut(s)	168, 273, 514, 629, 708
FaeI	CATG	8 cut(s)	241, 325, 400, 439, 535, 633, 654, 712
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	8 cut(s)	237, 321, 396, 435, 531, 629, 650, 708
FauI	CCCGC	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	4 cut(s)	133, 181, 184, 378
FokI	GGATG	4 cut(s)	185, 413, 563, 622
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	4 cut(s)	133, 181, 184, 378
FspBI	CTAG	2 cut(s)	20, 470
FspI	TGCGCA	1 cut(s)	665
GlaI	GCGC	3 cut(s)	331, 408, 665
GluI	GCNGC	4 cut(s)	133, 181, 184, 378
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	2 cut(s)	272, 295
HapII	CCGG	5 cut(s)	30, 257, 269, 299, 313
HgaI	GACGC	1 cut(s)	473
HhaI	GCGC	3 cut(s)	332, 409, 666
Hin1I	GRCGYC	1 cut(s)	465
Hin1II	CATG	8 cut(s)	241, 325, 400, 439, 535, 633, 654, 712
Hin6I	GCGC	3 cut(s)	330, 407, 664
HinP1I	GCGC	3 cut(s)	330, 407, 664
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	3 cut(s)	566, 647, 693
HpaII	CCGG	5 cut(s)	30, 257, 269, 299, 313
HphI	GGTGA	8 cut(s)	59, 82, 313, 397, 403, 484, 614, 632
Hpy166II	GTNNAC	2 cut(s)	427, 492
Hpy188I	TCNGA	4 cut(s)	97, 419, 463, 571
Hpy188III	TCNNGA	2 cut(s)	313, 532
Hpy8I	GTNNAC	2 cut(s)	427, 492
Hpy99I	CGWCG	1 cut(s)	467
HpyAV	CCTTC	4 cut(s)	44, 319, 382, 667
HpyCH4III	ACNGT	2 cut(s)	506, 602
HpyCH4V	TGCA	3 cut(s)	377, 654, 720
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 257, 704
HpyF3I	CTNAG	2 cut(s)	14, 453
Hsp92I	GRCGYC	1 cut(s)	465
Hsp92II	CATG	8 cut(s)	241, 325, 400, 439, 535, 633, 654, 712
HspAI	GCGC	3 cut(s)	330, 407, 664
Kpn2I	TCCGGA	1 cut(s)	312
Kzo9I	GATC	8 cut(s)	58, 111, 241, 253, 305, 339, 509, 553
LpnPI	CCDG	9 cut(s)	43, 47, 270, 282, 312, 326, 351, 443, 592
Lsp1109I	GCAGC	4 cut(s)	144, 192, 195, 389
LweI	GCATC	1 cut(s)	600
MaeI	CTAG	2 cut(s)	20, 470
MaeIII	GTNAC	2 cut(s)	500, 602
MalI	GATC	8 cut(s)	60, 113, 243, 255, 307, 341, 511, 555
MboI	GATC	8 cut(s)	58, 111, 241, 253, 305, 339, 509, 553
MboII	GAAGA	9 cut(s)	68, 94, 156, 236, 244, 328, 349, 548, 602
MflI	RGATCY	4 cut(s)	241, 305, 509, 553
MhlI	GDGCHC	1 cut(s)	15
MlyI	GAGTC	1 cut(s)	687
MmeI	TCCRAC	2 cut(s)	486, 670
MroI	TCCGGA	1 cut(s)	312
MslI	CAYNNNNRTG	1 cut(s)	140
MspI	CCGG	5 cut(s)	30, 257, 269, 299, 313
MspR9I	CCNGG	2 cut(s)	30, 299
MwoI	GCNNNNNNNGC	3 cut(s)	25, 257, 704
NciI	CCSGG	2 cut(s)	30, 299
NcoI	CCATGG	2 cut(s)	629, 708
NdeII	GATC	8 cut(s)	58, 111, 241, 253, 305, 339, 509, 553
NlaIII	CATG	8 cut(s)	241, 325, 400, 439, 535, 633, 654, 712
NlaIV	GGNNCC	2 cut(s)	296, 511
NmuCI	GTSAC	1 cut(s)	602
NsbI	TGCGCA	1 cut(s)	665
NspI	RCATGY	2 cut(s)	325, 439
OliI	CACNNNNGTG	1 cut(s)	140
PagI	TCATGA	1 cut(s)	531
PciI	ACATGT	2 cut(s)	321, 435
PfeI	GAWTC	2 cut(s)	566, 647
PkrI	GCNGC	4 cut(s)	134, 182, 185, 379
PleI	GAGTC	1 cut(s)	687
PpsI	GAGTC	1 cut(s)	687
PscI	ACATGT	2 cut(s)	321, 435
Psp124BI	GAGCTC	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	296, 511
PspPI	GGNCC	1 cut(s)	294
PstNI	CAGNNNCTG	1 cut(s)	732
PsuI	RGATCY	4 cut(s)	241, 305, 509, 553
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
RseI	CAYNNNNRTG	1 cut(s)	140
SacI	GAGCTC	1 cut(s)	15
SalI	GTCGAC	1 cut(s)	425
SatI	GCNGC	4 cut(s)	133, 181, 184, 378
Sau3AI	GATC	8 cut(s)	58, 111, 241, 253, 305, 339, 509, 553
Sau96I	GGNCC	1 cut(s)	294
SchI	GAGTC	1 cut(s)	687
ScrFI	CCNGG	2 cut(s)	30, 299
SduI	GDGCHC	1 cut(s)	15
SfaNI	GCATC	1 cut(s)	600
SmiMI	CAYNNNNRTG	1 cut(s)	140
SsiI	CCGC	1 cut(s)	249
SspMI	CTAG	2 cut(s)	20, 470
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	2 cut(s)	28, 297
StyI	CCWWGG	5 cut(s)	168, 273, 514, 629, 708
TaaI	ACNGT	2 cut(s)	506, 602
TaqI	TCGA	1 cut(s)	426
TatI	WGTACW	1 cut(s)	438
TfiI	GAWTC	2 cut(s)	566, 647
TseFI	GTSAC	1 cut(s)	602
TseI	GCWGC	4 cut(s)	132, 180, 183, 377
Tsp45I	GTSAC	1 cut(s)	602
TspDTI	ATGAA	7 cut(s)	207, 230, 369, 520, 548, 603, 686
XagI	CCTNNNNNAGG	1 cut(s)	419
XceI	RCATGY	2 cut(s)	325, 439
XmiI	GTMKAC	1 cut(s)	426
XspI	CTAG	2 cut(s)	20, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.