Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002074

Physical Location & Seq

Genomic Coordinates Reverse (-)

61278929 .. 61281320

Gene Structure 2392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009966

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGAAGCTGTTAGCCGGAAGATGACTTTGAACTTCAAAGAAACCGAGCTGTGCCTTGGGTTGCCCGGCGGGGCTGCTGTGACCGAGCCGGAGATCTGTACCCCTAAGGCTACCGGAAAGAGAGGTTTCTCCGAGACCGTTGATCTCAAACTCAACCTACACGCCAAAGAAGATCTGATAAATGAGAATGTCAAAAATGTTTCTTCCAAGGAGAAAAACCTTCCTTGCGTTAAAGATCCAGCAAAACCACCAGCCAAGGCACAAGTTGTCGGTTGGCCACCAGTGCGCTCCTACAGAAAGAACGTTATGGCGCAGAAGAGCACCGGCGAGGAGAGCAGTACTACTACTGAGAAGGCTGCATTCGTGAAGGTTTGCATGGATGGTGCACCCTATCTTCGTAAGGTGGATTTGAAGATGTACAAGAGCTACAAGGAGCTATCTGATGCCTTGTCCAAGATGTTCAGCTCCTTCACCATGGGTTACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGTACTGAGTATGTGCCGACCTATGAAGATAAGGATGGAGACTGGATGCTTGTGGGTGATGTTCCATGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009753 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010101 GO:0010102 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048518 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

206

Amino Acids

22.85

Weight (kDa)

6.02

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	14 - 205	1.4e-69	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04250 AT3G23050 AT3G23050 AT3G23050 AT4G14550 AT4G14550 AT4G14550 AT4G14550
fragaria_vesca	FvH4_2g22520 FvH4_4g02280 FvH4_4g02280 FvH4_4g02280
malus_domestica	MD05G1205800.v1.1 MD10G1192900.v1.1 MD13G1205000.v1.1 MD16G1206700.v1.1
prunus_persica	Prupe.1G027600_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1
pyrus_communis	pycom05g19190 pycom13g17780 pycom16g17370
rosa_chinensis	RchiOBHm_Chr4g0389621 RchiOBHm_Chr6g0289571
rosa_laevigata	RLG00000009966 RLG00000012292
rosa_multiflora	Rmu_co8206274.1_g000001 Rmu_sc0001527.1_g000060 Rmu_sc0007419.1_g000003 Rmu_sc0033355.1_g000001 Rmu_sc0033356.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335610 Rroxscaffold_7G00177850
rosa_rugosa	Rorug03G0324200 Rorug06G0204600
rosa_samantha	Rh4AG029000 Rh4BG022200 Rh4CG031000 Rh4DG022700 Rh6BG322600 Rh6CG329200
rosa_wichuraiana	Rw4G002160 Rw6G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	69
AclI	AACGTT	1 cut(s)	303
AclWI	GGATC	2 cut(s)	230, 540
AcoI	YGGCCR	1 cut(s)	275
AfaI	GTAC	4 cut(s)	100, 340, 419, 547
AgsI	TTSAA	3 cut(s)	31, 37, 412
AluBI	AGCT	5 cut(s)	8, 49, 426, 436, 465
AluI	AGCT	5 cut(s)	8, 49, 426, 436, 465
Alw21I	GWGCWC	2 cut(s)	323, 388
Alw26I	GTCTC	2 cut(s)	128, 576
Alw44I	GTGCAC	1 cut(s)	384
AlwI	GGATC	2 cut(s)	230, 540
AoxI	GGCC	2 cut(s)	275, 489
ApaI	GGGCCC	1 cut(s)	493
ApaLI	GTGCAC	1 cut(s)	384
ApeKI	GCWGC	2 cut(s)	74, 356
AspLEI	GCGC	2 cut(s)	288, 313
AspS9I	GGNCC	2 cut(s)	489, 490
AsuC2I	CCSGG	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	463, 611
AxyI	CCTNAGG	1 cut(s)	105
BaeGI	GKGCMC	2 cut(s)	388, 493
BalI	TGGCCA	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	493
Bbv12I	GWGCWC	2 cut(s)	323, 388
BbvI	GCAGC	2 cut(s)	61, 343
BccI	CCATC	3 cut(s)	374, 523, 572
BcnI	CCSGG	1 cut(s)	66
BcoDI	GTCTC	2 cut(s)	128, 576
BfmI	CTRYAG	1 cut(s)	292
BglII	AGATCT	2 cut(s)	93, 172
BisI	GCNGC	2 cut(s)	75, 357
BlsI	GCNGC	2 cut(s)	76, 358
BmcAI	AGTACT	2 cut(s)	340, 547
Bme1390I	CCNGG	1 cut(s)	66
BmgT120I	GGNCC	2 cut(s)	489, 490
BmiI	GGNNCC	2 cut(s)	490, 491
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	2 cut(s)	433, 579
BpuMI	CCSGG	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	6 cut(s)	55, 207, 255, 474, 493, 608
BsaWI	WCCGGW	1 cut(s)	113
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	2 cut(s)	281, 590
Bse21I	CCTNAGG	1 cut(s)	105
BseDI	CCNNGG	6 cut(s)	55, 207, 255, 474, 493, 608
BseGI	GGATG	3 cut(s)	385, 583, 594
BseMII	CTCAG	2 cut(s)	339, 540
BseNI	ACTGG	2 cut(s)	281, 590
BseRI	GAGGAG	1 cut(s)	344
BseSI	GKGCMC	2 cut(s)	388, 493
BseXI	GCAGC	2 cut(s)	61, 343
BshFI	GGCC	2 cut(s)	277, 491
BsiHKAI	GWGCWC	2 cut(s)	323, 388
BsiSI	CCGG	5 cut(s)	16, 66, 89, 114, 324
BsmAI	GTCTC	2 cut(s)	128, 576
BsmI	GAATGC	1 cut(s)	359
BsnI	GGCC	2 cut(s)	277, 491
Bso31I	GGTCTC	1 cut(s)	128
Bsp120I	GGGCCC	1 cut(s)	489
Bsp1286I	GDGCHC	3 cut(s)	323, 388, 493
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	5 cut(s)	93, 142, 172, 235, 532
Bsp19I	CCATGG	2 cut(s)	474, 608
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	2 cut(s)	277, 491
BspCNI	CTCAG	2 cut(s)	340, 541
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	2 cut(s)	490, 491
BspPI	GGATC	2 cut(s)	230, 540
BspQI	GCTCTTC	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	323
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	2 cut(s)	281, 590
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	6 cut(s)	55, 207, 255, 474, 493, 608
BssMI	GATC	5 cut(s)	93, 142, 172, 235, 532
BssT1I	CCWWGG	6 cut(s)	55, 207, 255, 474, 493, 608
Bst4CI	ACNGT	2 cut(s)	139, 545
Bst6I	CTCTTC	1 cut(s)	311
BstAUI	TGTACA	1 cut(s)	417
BstDEI	CTNAG	3 cut(s)	105, 348, 549
BstDSI	CCRYGG	2 cut(s)	474, 608
BstF5I	GGATG	3 cut(s)	385, 583, 594
BstHHI	GCGC	2 cut(s)	288, 313
BstKTI	GATC	5 cut(s)	96, 145, 175, 238, 535
BstMAI	GTCTC	2 cut(s)	128, 576
BstMBI	GATC	5 cut(s)	93, 142, 172, 235, 532
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 333
BstSCI	CCNGG	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	292
BstSLI	GKGCMC	2 cut(s)	388, 493
BstV1I	GCAGC	2 cut(s)	61, 343
BstX2I	RGATCY	4 cut(s)	93, 172, 235, 532
BstYI	RGATCY	4 cut(s)	93, 172, 235, 532
Bsu36I	CCTNAGG	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	277, 491
BtgI	CCRYGG	2 cut(s)	474, 608
BtsCI	GGATG	3 cut(s)	385, 583, 594
BtsIMutI	CAGTG	1 cut(s)	288
CciI	TCATGA	1 cut(s)	510
CfoI	GCGC	2 cut(s)	288, 313
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	2 cut(s)	489, 490
Csp6I	GTAC	4 cut(s)	99, 339, 418, 546
CviAII	CATG	4 cut(s)	376, 475, 511, 609
CviQI	GTAC	4 cut(s)	99, 339, 418, 546
DdeI	CTNAG	3 cut(s)	105, 348, 549
DpnI	GATC	5 cut(s)	95, 144, 174, 237, 534
DpnII	GATC	5 cut(s)	93, 142, 172, 235, 532
EaeI	YGGCCR	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco130I	CCWWGG	6 cut(s)	55, 207, 255, 474, 493, 608
Eco24I	GRGCYC	1 cut(s)	493
Eco31I	GGTCTC	1 cut(s)	128
Eco81I	CCTNAGG	1 cut(s)	105
EcoO109I	RGGNCCY	1 cut(s)	489
EcoT14I	CCWWGG	6 cut(s)	55, 207, 255, 474, 493, 608
EcoT38I	GRGCYC	1 cut(s)	493
ErhI	CCWWGG	6 cut(s)	55, 207, 255, 474, 493, 608
FaeI	CATG	4 cut(s)	379, 478, 514, 612
FaiI	YATR	8 cut(s)	308, 377, 476, 486, 512, 555, 567, 610
FatI	CATG	4 cut(s)	375, 474, 510, 608
FauI	CCCGC	1 cut(s)	62
Fnu4HI	GCNGC	2 cut(s)	75, 357
FokI	GGATG	3 cut(s)	392, 590, 601
FriOI	GRGCYC	1 cut(s)	493
Fsp4HI	GCNGC	2 cut(s)	75, 357
GlaI	GCGC	2 cut(s)	287, 312
GluI	GCNGC	2 cut(s)	75, 357
HaeIII	GGCC	2 cut(s)	277, 491
HapII	CCGG	5 cut(s)	16, 66, 89, 114, 324
HhaI	GCGC	2 cut(s)	288, 313
Hin1II	CATG	4 cut(s)	379, 478, 514, 612
Hin6I	GCGC	2 cut(s)	286, 311
HinP1I	GCGC	2 cut(s)	286, 311
HpaII	CCGG	5 cut(s)	16, 66, 89, 114, 324
HphI	GGTGA	2 cut(s)	463, 611
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	4 cut(s)	133, 177, 442, 540
Hpy188III	TCNNGA	2 cut(s)	364, 511
Hpy8I	GTNNAC	1 cut(s)	386
HpyAV	CCTTC	4 cut(s)	230, 346, 361, 478
HpyCH4III	ACNGT	2 cut(s)	139, 545
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	3 cut(s)	359, 375, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 333
HpyF3I	CTNAG	3 cut(s)	105, 348, 549
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	4 cut(s)	379, 478, 514, 612
HspAI	GCGC	2 cut(s)	286, 311
Kzo9I	GATC	5 cut(s)	93, 142, 172, 235, 532
LguI	GCTCTTC	1 cut(s)	311
LmnI	GCTCC	3 cut(s)	293, 433, 470
LpnPI	CCDG	9 cut(s)	29, 79, 102, 127, 252, 264, 294, 337, 571
Lsp1109I	GCAGC	2 cut(s)	61, 343
LweI	GCATC	2 cut(s)	433, 579
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	2 cut(s)	79, 479
MalI	GATC	5 cut(s)	95, 144, 174, 237, 534
MboI	GATC	5 cut(s)	93, 142, 172, 235, 532
MboII	GAAGA	8 cut(s)	31, 182, 195, 328, 386, 424, 527, 581
MflI	RGATCY	4 cut(s)	93, 172, 235, 532
MhlI	GDGCHC	3 cut(s)	323, 388, 493
MlsI	TGGCCA	1 cut(s)	277
MluNI	TGGCCA	1 cut(s)	277
MnlI	CCTC	2 cut(s)	116, 322
Mox20I	TGGCCA	1 cut(s)	277
MscI	TGGCCA	1 cut(s)	277
MseI	TTAA	1 cut(s)	231
Msp20I	TGGCCA	1 cut(s)	277
MspI	CCGG	5 cut(s)	16, 66, 89, 114, 324
MspR9I	CCNGG	1 cut(s)	66
Mva1269I	GAATGC	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	283, 333
NciI	CCSGG	1 cut(s)	66
NcoI	CCATGG	2 cut(s)	474, 608
NdeII	GATC	5 cut(s)	93, 142, 172, 235, 532
NlaIII	CATG	4 cut(s)	379, 478, 514, 612
NlaIV	GGNNCC	2 cut(s)	490, 491
NmuCI	GTSAC	1 cut(s)	79
PagI	TCATGA	1 cut(s)	510
PciSI	GCTCTTC	1 cut(s)	311
PctI	GAATGC	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	76, 358
Psp1406I	AACGTT	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	490, 491
PspOMI	GGGCCC	1 cut(s)	489
PspPI	GGNCC	2 cut(s)	489, 490
PsuI	RGATCY	4 cut(s)	93, 172, 235, 532
RsaI	GTAC	4 cut(s)	100, 340, 419, 547
RsaNI	GTAC	4 cut(s)	99, 339, 418, 546
SapI	GCTCTTC	1 cut(s)	311
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	2 cut(s)	75, 357
Sau3AI	GATC	5 cut(s)	93, 142, 172, 235, 532
Sau96I	GGNCC	2 cut(s)	489, 490
ScaI	AGTACT	2 cut(s)	340, 547
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	3 cut(s)	323, 388, 493
SfaNI	GCATC	2 cut(s)	433, 579
SfcI	CTRYAG	1 cut(s)	292
SgrAI	CRCCGGYG	1 cut(s)	323
SsiI	CCGC	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	64
StyI	CCWWGG	6 cut(s)	55, 207, 255, 474, 493, 608
TaaI	ACNGT	2 cut(s)	139, 545
TaiI	ACGT	1 cut(s)	306
TaqII	GACCGA	1 cut(s)	98
TatI	WGTACW	3 cut(s)	338, 417, 545
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	2 cut(s)	74, 356
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	3 cut(s)	499, 527, 582
TspRI	CASTG	1 cut(s)	288
VneI	GTGCAC	1 cut(s)	384
ZrmI	AGTACT	2 cut(s)	340, 547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.