Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002074

Physical Location & Seq

Genomic Coordinates Forward (+)

3730837 .. 3735388

Gene Structure 4552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG022700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGAAGCTGTTAGCCGGAAGATGACTTTGAACTTCAAAGAGACCGAGCTGTGCCTTGGGTTGCCCGGCGGGGCTGCTGTGACCGAGCCGGAGATCTGTACTCCTAAGGCTACTGGAAAGAGAGGTTTCTCCGAGACCGTTGATCTCAAACTCAACCTACACGCCAAGGAAGATCTGATAAATGAGAATGTCAAAAATGTTTCTTCCAAGGAGAAAAACCTTCCTTGCGTTAAAGATCCAGCAAAACCACCAGCCAAGGCACAAGTTGTCGGTTGGCCACCAGTGCGCTCCTACAGAAAGAACGTTATGGCGCAGAAGAGCACCGGCGAGGAGAGCAGTACTACTACTGAGAAGGCTGCATTCGTGAAGGTTTGCATGGATGGTGCACCCTATCTTCGTAAGGTGGATTTGAAGATGTACAAGAGCTACAAGGAGCTATCTGATGCCTTGTCCAAGATGTTCAGCTCCTTCACCATGGGTAAGTTCAATATACTTAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009753 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010101 GO:0010102 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048518 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

167

Amino Acids

18.47

Weight (kDa)

9.3

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	14 - 162	1.4e-44	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04250 AT3G23050 AT3G23050 AT3G23050 AT4G14550 AT4G14550 AT4G14550 AT4G14550
fragaria_vesca	FvH4_2g22520 FvH4_4g02280 FvH4_4g02280 FvH4_4g02280
malus_domestica	MD05G1205800.v1.1 MD10G1192900.v1.1 MD13G1205000.v1.1 MD16G1206700.v1.1
prunus_persica	Prupe.1G027600_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1
pyrus_communis	pycom05g19190 pycom13g17780 pycom16g17370
rosa_chinensis	RchiOBHm_Chr4g0389621 RchiOBHm_Chr6g0289571
rosa_laevigata	RLG00000009966 RLG00000012292
rosa_multiflora	Rmu_co8206274.1_g000001 Rmu_sc0001527.1_g000060 Rmu_sc0007419.1_g000003 Rmu_sc0033355.1_g000001 Rmu_sc0033356.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335610 Rroxscaffold_7G00177850
rosa_rugosa	Rorug03G0324200 Rorug06G0204600
rosa_samantha	Rh4AG029000 Rh4BG022200 Rh4CG031000 Rh4DG022700 Rh6BG322600 Rh6CG329200
rosa_wichuraiana	Rw4G002160 Rw6G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	69
AclI	AACGTT	1 cut(s)	303
AclWI	GGATC	1 cut(s)	230
AcoI	YGGCCR	1 cut(s)	275
AfaI	GTAC	3 cut(s)	100, 340, 419
AgsI	TTSAA	4 cut(s)	31, 37, 412, 487
AluBI	AGCT	5 cut(s)	8, 49, 426, 436, 465
AluI	AGCT	5 cut(s)	8, 49, 426, 436, 465
Alw21I	GWGCWC	2 cut(s)	323, 388
Alw26I	GTCTC	2 cut(s)	35, 128
Alw44I	GTGCAC	1 cut(s)	384
AlwI	GGATC	1 cut(s)	230
AoxI	GGCC	1 cut(s)	275
ApaLI	GTGCAC	1 cut(s)	384
ApeKI	GCWGC	2 cut(s)	74, 356
AspLEI	GCGC	2 cut(s)	288, 313
AsuC2I	CCSGG	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	463
AxyI	CCTNAGG	1 cut(s)	105
BaeGI	GKGCMC	1 cut(s)	388
BalI	TGGCCA	1 cut(s)	277
Bbv12I	GWGCWC	2 cut(s)	323, 388
BbvI	GCAGC	2 cut(s)	61, 343
BccI	CCATC	1 cut(s)	374
BcnI	CCSGG	1 cut(s)	66
BcoDI	GTCTC	2 cut(s)	35, 128
BfaI	CTAG	1 cut(s)	502
BfmI	CTRYAG	1 cut(s)	292
BglII	AGATCT	2 cut(s)	93, 172
BisI	GCNGC	2 cut(s)	75, 357
BlsI	GCNGC	2 cut(s)	76, 358
BmcAI	AGTACT	1 cut(s)	340
Bme1390I	CCNGG	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	1 cut(s)	433
BpuMI	CCSGG	1 cut(s)	66
BsaI	GGTCTC	2 cut(s)	35, 128
BsaJI	CCNNGG	5 cut(s)	55, 165, 207, 255, 474
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	2 cut(s)	118, 281
Bse21I	CCTNAGG	1 cut(s)	105
BseDI	CCNNGG	5 cut(s)	55, 165, 207, 255, 474
BseGI	GGATG	1 cut(s)	385
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	2 cut(s)	118, 281
BseRI	GAGGAG	1 cut(s)	344
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	2 cut(s)	61, 343
BshFI	GGCC	1 cut(s)	277
BsiHKAI	GWGCWC	2 cut(s)	323, 388
BsiSI	CCGG	4 cut(s)	16, 66, 89, 324
BsmAI	GTCTC	2 cut(s)	35, 128
BsmI	GAATGC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	277
Bso31I	GGTCTC	2 cut(s)	35, 128
Bsp1286I	GDGCHC	2 cut(s)	323, 388
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	4 cut(s)	93, 142, 172, 235
Bsp19I	CCATGG	1 cut(s)	474
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	1 cut(s)	340
BspPI	GGATC	1 cut(s)	230
BspQI	GCTCTTC	1 cut(s)	311
BspTNI	GGTCTC	2 cut(s)	35, 128
BsrFI	RCCGGY	1 cut(s)	323
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	2 cut(s)	118, 281
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	5 cut(s)	55, 165, 207, 255, 474
BssMI	GATC	4 cut(s)	93, 142, 172, 235
BssT1I	CCWWGG	5 cut(s)	55, 165, 207, 255, 474
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	311
BstAUI	TGTACA	1 cut(s)	417
BstDEI	CTNAG	2 cut(s)	105, 348
BstDSI	CCRYGG	1 cut(s)	474
BstF5I	GGATG	1 cut(s)	385
BstHHI	GCGC	2 cut(s)	288, 313
BstKTI	GATC	4 cut(s)	96, 145, 175, 238
BstMAI	GTCTC	2 cut(s)	35, 128
BstMBI	GATC	4 cut(s)	93, 142, 172, 235
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 333
BstSCI	CCNGG	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	292
BstSLI	GKGCMC	1 cut(s)	388
BstV1I	GCAGC	2 cut(s)	61, 343
BstX2I	RGATCY	3 cut(s)	93, 172, 235
BstYI	RGATCY	3 cut(s)	93, 172, 235
Bsu36I	CCTNAGG	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	277
BtgI	CCRYGG	1 cut(s)	474
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	288
CfoI	GCGC	2 cut(s)	288, 313
Cfr10I	RCCGGY	1 cut(s)	323
Csp6I	GTAC	3 cut(s)	99, 339, 418
CviAII	CATG	2 cut(s)	376, 475
CviQI	GTAC	3 cut(s)	99, 339, 418
DdeI	CTNAG	2 cut(s)	105, 348
DpnI	GATC	4 cut(s)	95, 144, 174, 237
DpnII	GATC	4 cut(s)	93, 142, 172, 235
EaeI	YGGCCR	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco130I	CCWWGG	5 cut(s)	55, 165, 207, 255, 474
Eco31I	GGTCTC	2 cut(s)	35, 128
Eco81I	CCTNAGG	1 cut(s)	105
EcoT14I	CCWWGG	5 cut(s)	55, 165, 207, 255, 474
ErhI	CCWWGG	5 cut(s)	55, 165, 207, 255, 474
FaeI	CATG	2 cut(s)	379, 478
FaiI	YATR	4 cut(s)	308, 377, 476, 491
FatI	CATG	2 cut(s)	375, 474
FauI	CCCGC	1 cut(s)	62
Fnu4HI	GCNGC	2 cut(s)	75, 357
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	2 cut(s)	75, 357
FspBI	CTAG	1 cut(s)	502
GlaI	GCGC	2 cut(s)	287, 312
GluI	GCNGC	2 cut(s)	75, 357
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	4 cut(s)	16, 66, 89, 324
HhaI	GCGC	2 cut(s)	288, 313
Hin1II	CATG	2 cut(s)	379, 478
Hin6I	GCGC	2 cut(s)	286, 311
HinP1I	GCGC	2 cut(s)	286, 311
HpaII	CCGG	4 cut(s)	16, 66, 89, 324
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	3 cut(s)	133, 177, 442
Hpy188III	TCNNGA	1 cut(s)	364
Hpy8I	GTNNAC	1 cut(s)	386
HpyAV	CCTTC	4 cut(s)	230, 346, 361, 478
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	3 cut(s)	359, 375, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 333
HpyF3I	CTNAG	2 cut(s)	105, 348
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	379, 478
HspAI	GCGC	2 cut(s)	286, 311
Kzo9I	GATC	4 cut(s)	93, 142, 172, 235
LguI	GCTCTTC	1 cut(s)	311
LmnI	GCTCC	3 cut(s)	293, 433, 470
LpnPI	CCDG	8 cut(s)	29, 79, 99, 102, 252, 264, 294, 337
Lsp1109I	GCAGC	2 cut(s)	61, 343
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	502
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	4 cut(s)	95, 144, 174, 237
MboI	GATC	4 cut(s)	93, 142, 172, 235
MboII	GAAGA	6 cut(s)	31, 182, 195, 328, 386, 424
MflI	RGATCY	3 cut(s)	93, 172, 235
MhlI	GDGCHC	2 cut(s)	323, 388
MlsI	TGGCCA	1 cut(s)	277
MluCI	AATT	1 cut(s)	496
MluNI	TGGCCA	1 cut(s)	277
MnlI	CCTC	2 cut(s)	116, 322
Mox20I	TGGCCA	1 cut(s)	277
MscI	TGGCCA	1 cut(s)	277
MseI	TTAA	2 cut(s)	231, 495
Msp20I	TGGCCA	1 cut(s)	277
MspI	CCGG	4 cut(s)	16, 66, 89, 324
MspR9I	CCNGG	1 cut(s)	66
Mva1269I	GAATGC	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	283, 333
NciI	CCSGG	1 cut(s)	66
NcoI	CCATGG	1 cut(s)	474
NdeII	GATC	4 cut(s)	93, 142, 172, 235
NlaIII	CATG	2 cut(s)	379, 478
NmuCI	GTSAC	1 cut(s)	79
PciSI	GCTCTTC	1 cut(s)	311
PctI	GAATGC	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	76, 358
Psp1406I	AACGTT	1 cut(s)	303
PsuI	RGATCY	3 cut(s)	93, 172, 235
RsaI	GTAC	3 cut(s)	100, 340, 419
RsaNI	GTAC	3 cut(s)	99, 339, 418
SapI	GCTCTTC	1 cut(s)	311
SaqAI	TTAA	2 cut(s)	231, 495
SatI	GCNGC	2 cut(s)	75, 357
Sau3AI	GATC	4 cut(s)	93, 142, 172, 235
ScaI	AGTACT	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	2 cut(s)	323, 388
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	1 cut(s)	292
SgrAI	CRCCGGYG	1 cut(s)	323
Sse9I	AATT	1 cut(s)	496
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	1 cut(s)	502
StyD4I	CCNGG	1 cut(s)	64
StyI	CCWWGG	5 cut(s)	55, 165, 207, 255, 474
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	306
TaqII	GACCGA	2 cut(s)	59, 98
TasI	AATT	1 cut(s)	496
TatI	WGTACW	3 cut(s)	98, 338, 417
Tru1I	TTAA	2 cut(s)	231, 495
Tru9I	TTAA	2 cut(s)	231, 495
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	2 cut(s)	74, 356
Tsp45I	GTSAC	1 cut(s)	79
TspRI	CASTG	1 cut(s)	288
VneI	GTGCAC	1 cut(s)	384
XspI	CTAG	1 cut(s)	502
ZrmI	AGTACT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.