Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Forward (+)

2635939 .. 2638004

Gene Structure 2066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAGTAAGCTTCAGAGTGAGGCCGTTCGTGAAGCCATCACTACTATCACAGGGAAATCCGAGGCAAAGAAACGTAACTTTGTCGAGACTATTGAGCTCCAGATCGGTCTGAAGAACTATGACCCTCAAAAGGACAAGCGTTTCAGTGGATCTGTCAAGTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTTAACAAGAACAAGAAACTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCCTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGAATGAAACAAAGGCAACAGTGAAGTTCCAGCTGAAGAAGGTTCTGTGCATGGGAGTTGCAGTTGGTAACCTTTCAATGGAAGAGAAGCAGATCTTTCAGAATGTGCAGATGAGCGTCAACTTCCTCGTCTCGCTATTGAAGAAGAACTGGCAAAATGTCAGGTGTTTGTACCTCAAGAGCACAATGGGACCACCACAAAGAATCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009791 GO:0009955 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0048731 GO:0048856 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090696 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

216

Amino Acids

24.47

Weight (kDa)

9.89

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	21 - 211	9.8e-53	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	2 cut(s)	131, 494
AfaI	GTAC	1 cut(s)	611
AfiI	CCNNNNNNNGG	2 cut(s)	130, 517
AgsI	TTSAA	3 cut(s)	221, 516, 580
AjnI	CCWGG	2 cut(s)	373, 417
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	5 cut(s)	10, 97, 274, 304, 472
AluI	AGCT	5 cut(s)	10, 97, 274, 304, 472
Alw21I	GWGCWC	2 cut(s)	99, 623
Alw26I	GTCTC	3 cut(s)	80, 267, 574
AlwI	GGATC	1 cut(s)	157
AoxI	GGCC	2 cut(s)	21, 330
ApoI	RAATTY	1 cut(s)	395
AspS9I	GGNCC	2 cut(s)	371, 629
AsuHPI	GGTGA	1 cut(s)	451
AvaII	GGWCC	2 cut(s)	371, 629
BanII	GRGCYC	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	356
Bbv12I	GWGCWC	2 cut(s)	99, 623
BccI	CCATC	2 cut(s)	44, 229
BceAI	ACGGC	1 cut(s)	8
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	2 cut(s)	375, 419
BcoDI	GTCTC	3 cut(s)	80, 267, 574
BglII	AGATCT	2 cut(s)	189, 531
Bme1390I	CCNGG	2 cut(s)	375, 419
Bme18I	GGWCC	2 cut(s)	371, 629
BmgT120I	GGNCC	2 cut(s)	371, 629
BmiI	GGNNCC	1 cut(s)	630
BmrFI	CCNGG	2 cut(s)	375, 419
BmsI	GCATC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	356
BpmI	CTGGAG	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	599
BsaJI	CCNNGG	2 cut(s)	60, 426
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 517
Bse1I	ACTGG	1 cut(s)	593
BseBI	CCWGG	2 cut(s)	375, 419
BseDI	CCNNGG	2 cut(s)	60, 426
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	130, 517
BseMII	CTCAG	2 cut(s)	219, 327
BseNI	ACTGG	1 cut(s)	593
BseYI	CCCAGC	1 cut(s)	210
BsgI	GTGCAG	1 cut(s)	566
BshFI	GGCC	2 cut(s)	23, 332
BsiHKAI	GWGCWC	2 cut(s)	99, 623
BslFI	GGGAC	1 cut(s)	642
BslI	CCNNNNNNNGG	2 cut(s)	130, 517
BsmAI	GTCTC	3 cut(s)	80, 267, 574
BsmBI	CGTCTC	1 cut(s)	574
BsmFI	GGGAC	1 cut(s)	642
BsnI	GGCC	2 cut(s)	23, 332
Bsp1286I	GDGCHC	2 cut(s)	99, 623
Bsp143I	GATC	4 cut(s)	102, 149, 189, 531
BspANI	GGCC	2 cut(s)	23, 332
BspCNI	CTCAG	2 cut(s)	220, 328
BspLI	GGNNCC	1 cut(s)	630
BspPI	GGATC	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	593
BssECI	CCNNGG	2 cut(s)	60, 426
BssMI	GATC	4 cut(s)	102, 149, 189, 531
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	2 cut(s)	375, 419
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	2 cut(s)	216, 516
BstC8I	GCNNGC	2 cut(s)	197, 306
BstDEI	CTNAG	2 cut(s)	228, 336
BstEII	GGTNACC	1 cut(s)	506
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	4 cut(s)	105, 152, 192, 534
BstMAI	GTCTC	3 cut(s)	80, 267, 574
BstMBI	GATC	4 cut(s)	102, 149, 189, 531
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	2 cut(s)	375, 419
BstNSI	RCATGY	2 cut(s)	199, 218
BstPI	GGTNACC	1 cut(s)	506
BstSCI	CCNGG	2 cut(s)	373, 417
BstV2I	GAAGAC	1 cut(s)	356
BstX2I	RGATCY	3 cut(s)	149, 189, 531
BstYI	RGATCY	3 cut(s)	149, 189, 531
BsuRI	GGCC	2 cut(s)	23, 332
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	2 cut(s)	151, 465
Cac8I	GCNNGC	2 cut(s)	197, 306
Cfr13I	GGNCC	2 cut(s)	371, 629
CseI	GACGC	1 cut(s)	544
Csp6I	GTAC	1 cut(s)	610
CviAII	CATG	5 cut(s)	196, 215, 250, 320, 490
CviQI	GTAC	1 cut(s)	610
DdeI	CTNAG	2 cut(s)	228, 336
DpnI	GATC	4 cut(s)	104, 151, 191, 533
DpnII	GATC	4 cut(s)	102, 149, 189, 531
Eam1104I	CTCTTC	2 cut(s)	216, 516
EarI	CTCTTC	2 cut(s)	216, 516
Ecl136II	GAGCTC	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	99
Eco47I	GGWCC	2 cut(s)	371, 629
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	2 cut(s)	131, 494
Eco91I	GGTNACC	1 cut(s)	506
EcoICRI	GAGCTC	1 cut(s)	97
EcoO65I	GGTNACC	1 cut(s)	506
EcoRII	CCWGG	2 cut(s)	373, 417
EcoT14I	CCWWGG	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	426
Esp3I	CGTCTC	1 cut(s)	574
FaeI	CATG	5 cut(s)	199, 218, 253, 323, 493
FaiI	YATR	7 cut(s)	120, 168, 197, 216, 251, 321, 491
FalI	AAGNNNNNCTT	2 cut(s)	518, 550
FaqI	GGGAC	1 cut(s)	642
FatI	CATG	5 cut(s)	195, 214, 249, 319, 489
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	99
GsaI	CCCAGC	1 cut(s)	214
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	2 cut(s)	23, 332
HgaI	GACGC	1 cut(s)	544
Hin1II	CATG	5 cut(s)	199, 218, 253, 323, 493
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HindIII	AAGCTT	3 cut(s)	8, 272, 302
HinfI	GANTC	6 cut(s)	260, 338, 355, 422, 431, 642
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	7 cut(s)	15, 61, 111, 203, 337, 540, 650
Hpy188III	TCNNGA	5 cut(s)	29, 85, 100, 298, 616
Hpy8I	GTNNAC	1 cut(s)	559
HpyAV	CCTTC	1 cut(s)	472
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	5 cut(s)	195, 308, 489, 500, 547
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	2 cut(s)	228, 336
HpySE526I	ACGT	1 cut(s)	73
Hsp92II	CATG	5 cut(s)	199, 218, 253, 323, 493
Kzo9I	GATC	4 cut(s)	102, 149, 189, 531
LmnI	GCTCC	1 cut(s)	102
LweI	GCATC	1 cut(s)	196
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	3 cut(s)	74, 159, 506
MalI	GATC	4 cut(s)	104, 151, 191, 533
MboI	GATC	4 cut(s)	102, 149, 189, 531
MflI	RGATCY	3 cut(s)	149, 189, 531
MhlI	GDGCHC	2 cut(s)	99, 623
MluCI	AATT	1 cut(s)	395
MlyI	GAGTC	3 cut(s)	269, 347, 440
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	8 cut(s)	13, 55, 135, 217, 343, 369, 575, 623
MseI	TTAA	3 cut(s)	276, 348, 381
MspA1I	CMGCKG	1 cut(s)	472
MspR9I	CCNGG	2 cut(s)	375, 419
MvaI	CCWGG	2 cut(s)	375, 419
MwoI	GCNNNNNNNGC	1 cut(s)	329
NdeII	GATC	4 cut(s)	102, 149, 189, 531
NlaIII	CATG	5 cut(s)	199, 218, 253, 323, 493
NlaIV	GGNNCC	1 cut(s)	630
NspI	RCATGY	2 cut(s)	199, 218
PaeI	GCATGC	1 cut(s)	199
PfeI	GAWTC	3 cut(s)	355, 422, 642
PleI	GAGTC	3 cut(s)	268, 346, 439
PpsI	GAGTC	3 cut(s)	268, 346, 439
Psp124BI	GAGCTC	1 cut(s)	99
Psp6I	CCWGG	2 cut(s)	373, 417
PspEI	GGTNACC	1 cut(s)	506
PspFI	CCCAGC	1 cut(s)	210
PspGI	CCWGG	2 cut(s)	373, 417
PspN4I	GGNNCC	1 cut(s)	630
PspPI	GGNCC	2 cut(s)	371, 629
PsuI	RGATCY	3 cut(s)	149, 189, 531
PvuII	CAGCTG	1 cut(s)	472
RsaI	GTAC	1 cut(s)	611
RsaNI	GTAC	1 cut(s)	610
SacI	GAGCTC	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	276, 348, 381
Sau3AI	GATC	4 cut(s)	102, 149, 189, 531
Sau96I	GGNCC	2 cut(s)	371, 629
SchI	GAGTC	3 cut(s)	269, 347, 440
ScrFI	CCNGG	2 cut(s)	375, 419
SduI	GDGCHC	2 cut(s)	99, 623
SfaNI	GCATC	1 cut(s)	196
SinI	GGWCC	2 cut(s)	371, 629
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
SphI	GCATGC	1 cut(s)	199
Sse9I	AATT	1 cut(s)	395
SstI	GAGCTC	1 cut(s)	99
StyD4I	CCNGG	2 cut(s)	373, 417
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	460
TaiI	ACGT	1 cut(s)	76
TaqI	TCGA	1 cut(s)	84
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	1 cut(s)	395
TfiI	GAWTC	3 cut(s)	355, 422, 642
Tru1I	TTAA	3 cut(s)	276, 348, 381
Tru9I	TTAA	3 cut(s)	276, 348, 381
TscAI	CASTG	2 cut(s)	151, 465
TspDTI	ATGAA	2 cut(s)	200, 459
TspRI	CASTG	2 cut(s)	151, 465
VpaK11BI	GGWCC	2 cut(s)	371, 629
XapI	RAATTY	1 cut(s)	395
XceI	RCATGY	2 cut(s)	199, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.