Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Forward (+)

393808 .. 394338

Gene Structure 531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1002800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAATGCGTCCATGGCAAAGGAACGTAACTTCACCGAGACTATTGAACTTCAGATTGGGCTGAAAAATTATGATCCTCAAAGAGACAAACGGTTCGGTGGTTCTGTAAGGTTGCCGCACATCCCTCGTCCAAAGATGAAGGTCTGGATGCTTGGAGATGCTCAGCATGTTGAGGAGGCTGAAAAGATTGGGTTGGACTATATGGACGTTGAAGGGCTAAAGAAGCTAAACAAGAACAAGAAGTTGGTTAAGAAGTTGGCAAAGAAATACCATGCCTTTTTGGCTTCAGAAGCCGTTATGAAGCAGATTCCCCATCTTCTGGGTCCTGGTCTCAACGAGGCAGGAAAATTTCCAACCCTTGTTAGTCACCAAGAATCCGTCGAGTCTAGGGTTTCCGAGACAAAAGCAACGATCAAGTTCCAACTGAAGAAGCTTGTTTGTATGGGAGTTGCTGTAGGGAATGTGAGCATGGAAGAGAAGCAGATATTCCAGAACTTGCAATTGAGCGTTAACTTTCTGTATCGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

177

Amino Acids

20.01

Weight (kDa)

9.6

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	7 - 174	9.4e-41	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	319
AciI	CCGC	1 cut(s)	116
AclWI	GGATC	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	347
AcuI	CTGAAG	3 cut(s)	35, 270, 446
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	2 cut(s)	47, 212
AjnI	CCWGG	1 cut(s)	325
AjuI	GAANNNNNNNTTGG	4 cut(s)	39, 71, 227, 259
AluBI	AGCT	2 cut(s)	226, 433
AluI	AGCT	2 cut(s)	226, 433
Alw26I	GTCTC	4 cut(s)	32, 78, 335, 392
AlwI	GGATC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	347
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	2 cut(s)	25, 359
AvaII	GGWCC	1 cut(s)	323
BccI	CCATC	1 cut(s)	321
BceAI	ACGGC	1 cut(s)	278
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	1 cut(s)	327
BcoDI	GTCTC	4 cut(s)	32, 78, 335, 392
BfaI	CTAG	1 cut(s)	387
BfmI	CTRYAG	1 cut(s)	453
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	1 cut(s)	116
BlpI	GCTNAGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	117
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	2 cut(s)	138, 148
Bpu1102I	GCTNAGC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	12
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	2 cut(s)	120, 153
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMII	CTCAG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	4 cut(s)	32, 78, 335, 392
BsmI	GAATGC	1 cut(s)	10
Bso31I	GGTCTC	1 cut(s)	335
Bsp143I	GATC	2 cut(s)	73, 411
Bsp1720I	GCTNAGC	1 cut(s)	162
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	324
BspPI	GGATC	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	2 cut(s)	73, 411
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	93
Bst6I	CTCTTC	1 cut(s)	468
BstDEI	CTNAG	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	120, 153
BstKTI	GATC	2 cut(s)	76, 414
BstMAI	GTCTC	4 cut(s)	32, 78, 335, 392
BstMBI	GATC	2 cut(s)	73, 411
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 223, 281, 290
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	1 cut(s)	453
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	2 cut(s)	120, 153
Cfr13I	GGNCC	1 cut(s)	323
CviAII	CATG	4 cut(s)	13, 167, 272, 469
CviJI	RGCY	7 cut(s)	61, 179, 217, 226, 284, 293, 433
CviKI_1	RGCY	7 cut(s)	61, 179, 217, 226, 284, 293, 433
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	2 cut(s)	75, 413
DpnII	GATC	2 cut(s)	73, 411
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Eco130I	CCWWGG	1 cut(s)	12
Eco31I	GGTCTC	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	323
Eco57I	CTGAAG	3 cut(s)	35, 270, 446
EcoO109I	RGGNCCY	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	4 cut(s)	16, 170, 275, 472
FaiI	YATR	9 cut(s)	14, 72, 168, 201, 203, 273, 299, 443, 470
FatI	CATG	4 cut(s)	12, 166, 271, 468
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	2 cut(s)	107, 160
Fsp4HI	GCNGC	1 cut(s)	116
FspBI	CTAG	1 cut(s)	387
GluI	GCNGC	1 cut(s)	116
Hin1II	CATG	4 cut(s)	16, 170, 275, 472
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	3 cut(s)	307, 374, 383
HpaI	GTTAAC	1 cut(s)	511
HphI	GGTGA	2 cut(s)	25, 359
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	3 cut(s)	54, 289, 397
Hpy188III	TCNNGA	2 cut(s)	145, 490
Hpy8I	GTNNAC	1 cut(s)	511
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	2 cut(s)	133, 206
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	2 cut(s)	25, 207
HpyCH4V	TGCA	1 cut(s)	499
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 223, 281, 290
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	2 cut(s)	25, 207
Hsp92II	CATG	4 cut(s)	16, 170, 275, 472
KspAI	GTTAAC	1 cut(s)	511
Kzo9I	GATC	2 cut(s)	73, 411
LpnPI	CCDG	6 cut(s)	130, 305, 312, 327, 339, 503
LweI	GCATC	2 cut(s)	138, 148
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	2 cut(s)	25, 207
MaeIII	GTNAC	2 cut(s)	26, 365
MalI	GATC	2 cut(s)	75, 413
MboI	GATC	2 cut(s)	73, 411
MboII	GAAGA	3 cut(s)	308, 439, 485
MfeI	CAATTG	1 cut(s)	500
MluCI	AATT	3 cut(s)	67, 347, 500
MlyI	GAGTC	1 cut(s)	392
MmeI	TCCRAC	3 cut(s)	174, 377, 445
MnlI	CCTC	5 cut(s)	87, 135, 166, 169, 331
MseI	TTAA	2 cut(s)	249, 510
MspR9I	CCNGG	1 cut(s)	327
MunI	CAATTG	1 cut(s)	500
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	4 cut(s)	14, 223, 281, 290
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	2 cut(s)	73, 411
NlaIII	CATG	4 cut(s)	16, 170, 275, 472
NlaIV	GGNNCC	1 cut(s)	324
NmuCI	GTSAC	1 cut(s)	365
NspI	RCATGY	1 cut(s)	170
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	307, 374
PflMI	CCANNNNNTGG	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	117
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
PpuMI	RGGWCCY	1 cut(s)	323
Psp5II	RGGWCCY	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	323
PspPPI	RGGWCCY	1 cut(s)	323
SaqAI	TTAA	2 cut(s)	249, 510
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	2 cut(s)	73, 411
Sau96I	GGNCC	1 cut(s)	323
SchI	GAGTC	1 cut(s)	392
ScrFI	CCNGG	1 cut(s)	327
SetI	ASST	6 cut(s)	28, 113, 144, 210, 228, 435
SfaNI	GCATC	2 cut(s)	138, 148
SfcI	CTRYAG	1 cut(s)	453
SinI	GGWCC	1 cut(s)	323
Sse9I	AATT	3 cut(s)	67, 347, 500
SsiI	CCGC	1 cut(s)	116
SspMI	CTAG	1 cut(s)	387
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	2 cut(s)	28, 210
TaqI	TCGA	1 cut(s)	381
TasI	AATT	3 cut(s)	67, 347, 500
TauI	GCSGC	1 cut(s)	118
TfiI	GAWTC	2 cut(s)	307, 374
Tru1I	TTAA	2 cut(s)	249, 510
Tru9I	TTAA	2 cut(s)	249, 510
TseFI	GTSAC	1 cut(s)	365
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	3 cut(s)	17, 152, 314
TspGWI	ACGGA	1 cut(s)	367
Van91I	CCANNNNNTGG	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	323
XapI	RAATTY	1 cut(s)	347
XceI	RCATGY	1 cut(s)	170
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.