Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Reverse (-)

7435065 .. 7436769

Gene Structure 1705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G22440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAGTAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCACTGTAAGGAGACAAAGCCACGCAACTTCACTGAGACTATTGAACTCCAGATTGGTCTCAAGAACTATGACCCTCAAAAGGACAAGAGATTTAGCGGTTCTGTGAAATTGCCTCACGTTCCTAGGCCAAAGATGAAGATTTGCATGCTTGGTGATGCCCAGCACGTCGAAGAGGCTGAGAAGATTGGATTGGAATCTATGGATGTTGAAGCTCTTAAGAAGTTGAACAAGAACAAGAAACTTGTTAAGAAGCTTGCTAAGAAATTCCATGCTTTCCTTGCTTCTGAATCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTCAACAAGGCAGGAAAATTCCCAACTCTTGTTAGCCACCAAGAGTCTTTGGAATCCAAAGTGAATGAGACAAAGGCAACAGTGAAGTTCCAGCTCAAGAAGGTTCTATGTATGGGAGTTGCTGTCGGTAATCTTTCCATGGAGGAGAAGCAGATCTTTCAAAATGTTCAGATGAGTGTTAACTTCCTCGTTTCTCTCTTGAAGAAAAACTGGCAAAATGTGAGGTGCTTGTACTTGAAGAGCACAATGGGTCCACCAAACCGAGTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009791 GO:0009955 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0048731 GO:0048856 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090696 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

217

Amino Acids

24.53

Weight (kDa)

9.84

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	21 - 212	2.5e-53	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	150
AcsI	RAATTY	2 cut(s)	317, 398
AfaI	GTAC	1 cut(s)	614
AfiI	CCNNNNNNNGG	1 cut(s)	133
AflII	CTTAAG	1 cut(s)	269
AgsI	TTSAA	6 cut(s)	98, 263, 280, 542, 583, 619
AjiI	CACGTC	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	376
AjuI	GAANNNNNNNTTGG	4 cut(s)	90, 122, 227, 259
AluBI	AGCT	5 cut(s)	10, 42, 266, 307, 475
AluI	AGCT	5 cut(s)	10, 42, 266, 307, 475
Alw21I	GWGCWC	1 cut(s)	626
Alw26I	GTCTC	5 cut(s)	59, 83, 116, 386, 443
AoxI	GGCC	1 cut(s)	179
ApoI	RAATTY	2 cut(s)	317, 398
AspA2I	CCTAGG	1 cut(s)	176
AspS9I	GGNCC	2 cut(s)	374, 632
AsuHPI	GGTGA	1 cut(s)	218
AvaII	GGWCC	2 cut(s)	374, 632
AvrII	CCTAGG	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	626
BceAI	ACGGC	1 cut(s)	8
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	1 cut(s)	378
BcoDI	GTCTC	5 cut(s)	59, 83, 116, 386, 443
BfaI	CTAG	1 cut(s)	177
BfrI	CTTAAG	1 cut(s)	269
BglII	AGATCT	1 cut(s)	534
BlnI	CCTAGG	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	378
Bme18I	GGWCC	2 cut(s)	374, 632
BmgBI	CACGTC	1 cut(s)	220
BmgT120I	GGNCC	2 cut(s)	374, 632
BmiI	GGNNCC	1 cut(s)	633
BmrFI	CCNGG	1 cut(s)	378
BmsI	GCATC	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	359
BpmI	CTGGAG	1 cut(s)	86
BpuEI	CTTGAG	2 cut(s)	98, 461
BsaBI	GATNNNNATC	1 cut(s)	247
BsaI	GGTCTC	2 cut(s)	116, 386
BsaJI	CCNNGG	2 cut(s)	176, 519
BsaXI	ACNNNNNCTCC	2 cut(s)	489, 519
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	596
Bse8I	GATNNNNATC	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	176, 519
BseGI	GGATG	1 cut(s)	262
BseJI	GATNNNNATC	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	78, 222
BseNI	ACTGG	1 cut(s)	596
BseRI	GAGGAG	1 cut(s)	539
BseYI	CCCAGC	1 cut(s)	213
BshFI	GGCC	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	626
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	5 cut(s)	59, 83, 116, 386, 443
BsnI	GGCC	1 cut(s)	181
Bso31I	GGTCTC	2 cut(s)	116, 386
Bsp1286I	GDGCHC	1 cut(s)	626
Bsp143I	GATC	1 cut(s)	534
Bsp19I	CCATGG	1 cut(s)	519
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	1 cut(s)	181
BspCNI	CTCAG	2 cut(s)	79, 223
BspLI	GGNNCC	1 cut(s)	633
BspQI	GCTCTTC	1 cut(s)	614
BspTI	CTTAAG	1 cut(s)	269
BspTNI	GGTCTC	2 cut(s)	116, 386
BsrI	ACTGG	1 cut(s)	596
BssECI	CCNNGG	2 cut(s)	176, 519
BssMI	GATC	1 cut(s)	534
BssT1I	CCWWGG	2 cut(s)	176, 519
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	2 cut(s)	59, 463
Bst6I	CTCTTC	2 cut(s)	219, 614
BstAFI	CTTAAG	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	200, 309
BstDEI	CTNAG	3 cut(s)	87, 231, 312
BstDSI	CCRYGG	1 cut(s)	519
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	1 cut(s)	537
BstMAI	GTCTC	5 cut(s)	59, 83, 116, 386, 443
BstMBI	GATC	1 cut(s)	534
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNI	CCWGG	1 cut(s)	378
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	376
BstV2I	GAAGAC	1 cut(s)	359
BstX2I	RGATCY	1 cut(s)	534
BstYI	RGATCY	1 cut(s)	534
BsuRI	GGCC	1 cut(s)	181
BtgI	CCRYGG	1 cut(s)	519
BtrI	CACGTC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	262
BtsIMutI	CAGTG	3 cut(s)	55, 84, 468
Cac8I	GCNNGC	2 cut(s)	200, 309
Cfr13I	GGNCC	2 cut(s)	374, 632
Csp6I	GTAC	1 cut(s)	613
CviAII	CATG	3 cut(s)	199, 323, 520
CviQI	GTAC	1 cut(s)	613
DdeI	CTNAG	3 cut(s)	87, 231, 312
DpnI	GATC	1 cut(s)	536
DpnII	GATC	1 cut(s)	534
Eam1104I	CTCTTC	2 cut(s)	219, 614
EarI	CTCTTC	2 cut(s)	219, 614
Eco130I	CCWWGG	2 cut(s)	176, 519
Eco31I	GGTCTC	2 cut(s)	116, 386
Eco47I	GGWCC	2 cut(s)	374, 632
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	2 cut(s)	176, 519
ErhI	CCWWGG	2 cut(s)	176, 519
FaeI	CATG	3 cut(s)	202, 326, 523
FaiI	YATR	7 cut(s)	123, 200, 254, 324, 490, 494, 521
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FatI	CATG	3 cut(s)	198, 322, 519
FokI	GGATG	1 cut(s)	269
FspBI	CTAG	1 cut(s)	177
GsaI	CCCAGC	1 cut(s)	217
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	181
Hin1II	CATG	3 cut(s)	202, 326, 523
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HindIII	AAGCTT	2 cut(s)	8, 305
HinfI	GANTC	5 cut(s)	248, 341, 358, 425, 434
HpaI	GTTAAC	1 cut(s)	562
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	2 cut(s)	562, 635
Hpy188I	TCNGA	3 cut(s)	15, 340, 552
Hpy188III	TCNNGA	4 cut(s)	103, 115, 478, 580
Hpy8I	GTNNAC	2 cut(s)	562, 635
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	475
HpyCH4III	ACNGT	2 cut(s)	59, 463
HpyCH4IV	ACGT	2 cut(s)	171, 219
HpyCH4V	TGCA	1 cut(s)	198
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	3 cut(s)	87, 231, 312
HpySE526I	ACGT	2 cut(s)	171, 219
Hsp92II	CATG	3 cut(s)	202, 326, 523
KspAI	GTTAAC	1 cut(s)	562
Kzo9I	GATC	1 cut(s)	534
LguI	GCTCTTC	1 cut(s)	614
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	7 cut(s)	116, 227, 363, 378, 390, 485, 577
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	2 cut(s)	171, 219
MalI	GATC	1 cut(s)	536
MboI	GATC	1 cut(s)	534
MboII	GAAGA	6 cut(s)	202, 236, 247, 359, 595, 631
MflI	RGATCY	1 cut(s)	534
MhlI	GDGCHC	1 cut(s)	626
MluCI	AATT	3 cut(s)	161, 317, 398
MlyI	GAGTC	1 cut(s)	434
MnlI	CCTC	8 cut(s)	25, 138, 177, 220, 372, 517, 578, 597
MseI	TTAA	4 cut(s)	270, 300, 351, 561
MspCI	CTTAAG	1 cut(s)	269
MspR9I	CCNGG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	332
NcoI	CCATGG	1 cut(s)	519
NdeII	GATC	1 cut(s)	534
NlaIII	CATG	3 cut(s)	202, 326, 523
NlaIV	GGNNCC	1 cut(s)	633
NspI	RCATGY	1 cut(s)	202
PaeI	GCATGC	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	614
PfeI	GAWTC	4 cut(s)	248, 341, 358, 434
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
Psp6I	CCWGG	1 cut(s)	376
PspFI	CCCAGC	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	633
PspPI	GGNCC	2 cut(s)	374, 632
PsuI	RGATCY	1 cut(s)	534
RsaI	GTAC	1 cut(s)	614
RsaNI	GTAC	1 cut(s)	613
SapI	GCTCTTC	1 cut(s)	614
SaqAI	TTAA	4 cut(s)	270, 300, 351, 561
Sau3AI	GATC	1 cut(s)	534
Sau96I	GGNCC	2 cut(s)	374, 632
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	1 cut(s)	626
SetI	ASST	9 cut(s)	12, 44, 174, 222, 268, 309, 477, 486, 608
SfaNI	GCATC	1 cut(s)	199
SinI	GGWCC	2 cut(s)	374, 632
SmlI	CTYRAG	3 cut(s)	113, 269, 476
SmoI	CTYRAG	3 cut(s)	113, 269, 476
SphI	GCATGC	1 cut(s)	202
Sse9I	AATT	3 cut(s)	161, 317, 398
SsiI	CCGC	1 cut(s)	150
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	2 cut(s)	176, 519
TaaI	ACNGT	2 cut(s)	59, 463
TaiI	ACGT	2 cut(s)	174, 222
TaqI	TCGA	1 cut(s)	222
TasI	AATT	3 cut(s)	161, 317, 398
TatI	WGTACW	1 cut(s)	612
TfiI	GAWTC	4 cut(s)	248, 341, 358, 434
Tru1I	TTAA	4 cut(s)	270, 300, 351, 561
Tru9I	TTAA	4 cut(s)	270, 300, 351, 561
TscAI	CASTG	3 cut(s)	62, 91, 468
TspDTI	ATGAA	1 cut(s)	203
TspRI	CASTG	3 cut(s)	62, 91, 468
Vha464I	CTTAAG	1 cut(s)	269
VpaK11BI	GGWCC	2 cut(s)	374, 632
XapI	RAATTY	2 cut(s)	317, 398
XceI	RCATGY	1 cut(s)	202
XmaJI	CCTAGG	1 cut(s)	176
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.