Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Forward (+)

17966844 .. 17969443

Gene Structure 2600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g24900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAGTAAGCTTCAGAGTGATACTCTCAGGGAGGCTATCTCTGTCATCATGGCTGCTTCCAAGGAGAAGAATCGGAAGTTCACAGAAACTATTGAGCTTCAGATCGGGTTGAAGAATTATGATCCCCAAAAGGACAAGCGTTTCAGTGGTTCTGTTAAGCTGCCACACATTCCTCGTCCAAAGATGAAGGTCTGCATGCTTGGAGATGCTCAGCATGTTGAAGAGGCTCAGAAGATCGGTTTGGAGTACATGGATGTAGAAGCACTGAAGAAGTTAAACAAAAACAAGAAATTGGTTAAGAAACTGGCTAAGAAGTACCATGCTTTTTTAGCATCAGAAGCTGTTATCAAGCAGATTCCCCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGAAAGTTCCCAACCCTTGTTTCTCACCAAGAATCCCTGGAGTCTAAAATTTCTGAGACAAAAGCGACAATTAAGTTCCAGTTGAAGAAGGTTCTCTGTATGGGAGTTGCTGTAGGGAATGTCTCAATGGAGGAGAAGCAAATTTTCCAAAATGTGCAACTGAGTGTGAACTTCCTTGTTTCACTATTGAAAAAGAATTGGCAAAACGTAAAGTGCTTGAACCTCAAGACCACAATGGGGAAGCCATATCGTGTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

217

Amino Acids

24.49

Weight (kDa)

9.9

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	21 - 210	2.2e-51	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	116
AcsI	RAATTY	2 cut(s)	438, 531
AcuI	CTGAAG	2 cut(s)	83, 287
AfaI	GTAC	2 cut(s)	248, 317
AfiI	CCNNNNNNNGG	2 cut(s)	367, 627
AgsI	TTSAA	5 cut(s)	112, 221, 475, 580, 610
AjnI	CCWGG	2 cut(s)	373, 426
AjuI	GAANNNNNNNTTGG	4 cut(s)	224, 256, 394, 426
AluBI	AGCT	4 cut(s)	10, 97, 160, 341
AluI	AGCT	4 cut(s)	10, 97, 160, 341
Alw26I	GTCTC	3 cut(s)	383, 440, 517
AlwI	GGATC	1 cut(s)	116
AlwNI	CAGNNNCTG	1 cut(s)	341
ApeKI	GCWGC	2 cut(s)	53, 160
ApoI	RAATTY	2 cut(s)	438, 531
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	371
BbvI	GCAGC	2 cut(s)	40, 147
BciT130I	CCWGG	2 cut(s)	375, 428
BcoDI	GTCTC	3 cut(s)	383, 440, 517
BfmI	CTRYAG	1 cut(s)	501
BisI	GCNGC	2 cut(s)	54, 161
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	2 cut(s)	55, 162
Bme1390I	CCNGG	2 cut(s)	375, 428
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	372
BmrFI	CCNGG	2 cut(s)	375, 428
BmsI	GCATC	2 cut(s)	196, 341
BplI	GAGNNNNNCTC	4 cut(s)	7, 39, 23, 55
BpmI	CTGGAG	1 cut(s)	449
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	599
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	2 cut(s)	60, 426
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 627
Bse1I	ACTGG	2 cut(s)	309, 469
BseBI	CCWGG	2 cut(s)	375, 428
BseDI	CCNNGG	2 cut(s)	60, 426
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	367, 627
BseMII	CTCAG	5 cut(s)	40, 224, 242, 435, 542
BseNI	ACTGG	2 cut(s)	309, 469
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	2 cut(s)	40, 147
BslI	CCNNNNNNNGG	2 cut(s)	367, 627
BsmAI	GTCTC	3 cut(s)	383, 440, 517
Bso31I	GGTCTC	1 cut(s)	383
Bsp143I	GATC	3 cut(s)	102, 121, 234
Bsp1720I	GCTNAGC	1 cut(s)	210
BspCNI	CTCAG	5 cut(s)	39, 223, 241, 436, 543
BspLI	GGNNCC	1 cut(s)	372
BspPI	GGATC	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	383
BsrI	ACTGG	2 cut(s)	309, 469
BssECI	CCNNGG	2 cut(s)	60, 426
BssMI	GATC	3 cut(s)	102, 121, 234
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	2 cut(s)	375, 428
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	6 cut(s)	26, 210, 228, 309, 444, 551
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	3 cut(s)	105, 124, 237
BstMAI	GTCTC	3 cut(s)	383, 440, 517
BstMBI	GATC	3 cut(s)	102, 121, 234
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 338
BstNI	CCWGG	2 cut(s)	375, 428
BstNSI	RCATGY	2 cut(s)	199, 218
BstSCI	CCNGG	2 cut(s)	373, 426
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	2 cut(s)	40, 147
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	2 cut(s)	151, 263
Cac8I	GCNNGC	1 cut(s)	197
CaiI	CAGNNNCTG	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	371
Csp6I	GTAC	2 cut(s)	247, 316
CviAII	CATG	5 cut(s)	49, 196, 215, 250, 320
CviJI	RGCY	9 cut(s)	10, 35, 53, 97, 160, 227, 308, 341, 634
CviKI_1	RGCY	9 cut(s)	10, 35, 53, 97, 160, 227, 308, 341, 634
CviQI	GTAC	2 cut(s)	247, 316
DdeI	CTNAG	6 cut(s)	26, 210, 228, 309, 444, 551
DpnI	GATC	3 cut(s)	104, 123, 236
DpnII	GATC	3 cut(s)	102, 121, 234
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	371
Eco57I	CTGAAG	2 cut(s)	83, 287
EcoO109I	RGGNCCY	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	373, 426
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	5 cut(s)	52, 199, 218, 253, 323
FaiI	YATR	8 cut(s)	50, 120, 197, 216, 251, 321, 491, 637
FatI	CATG	5 cut(s)	48, 195, 214, 249, 319
Fnu4HI	GCNGC	2 cut(s)	54, 161
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	2 cut(s)	54, 161
GluI	GCNGC	2 cut(s)	54, 161
GsuI	CTGGAG	1 cut(s)	449
Hin1II	CATG	5 cut(s)	52, 199, 218, 253, 323
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	4 cut(s)	70, 355, 422, 431
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	2 cut(s)	81, 559
Hpy188I	TCNGA	6 cut(s)	15, 75, 102, 231, 337, 445
Hpy188III	TCNNGA	1 cut(s)	616
Hpy8I	GTNNAC	2 cut(s)	81, 559
HpyAV	CCTTC	2 cut(s)	181, 472
HpyCH4IV	ACGT	1 cut(s)	597
HpyCH4V	TGCA	2 cut(s)	195, 547
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 338
HpyF3I	CTNAG	6 cut(s)	26, 210, 228, 309, 444, 551
HpySE526I	ACGT	1 cut(s)	597
Hsp92II	CATG	5 cut(s)	52, 199, 218, 253, 323
Kzo9I	GATC	3 cut(s)	102, 121, 234
LpnPI	CCDG	8 cut(s)	13, 290, 360, 375, 387, 413, 440, 482
Lsp1109I	GCAGC	2 cut(s)	40, 147
LweI	GCATC	2 cut(s)	196, 341
MaeII	ACGT	1 cut(s)	597
MalI	GATC	3 cut(s)	104, 123, 236
MboI	GATC	3 cut(s)	102, 121, 234
MboII	GAAGA	6 cut(s)	79, 124, 233, 244, 280, 487
MluCI	AATT	6 cut(s)	115, 290, 438, 459, 531, 586
MlyI	GAGTC	1 cut(s)	440
MnlI	CCTC	5 cut(s)	25, 183, 217, 514, 623
MseI	TTAA	4 cut(s)	156, 275, 297, 462
MspR9I	CCNGG	2 cut(s)	375, 428
MvaI	CCWGG	2 cut(s)	375, 428
MwoI	GCNNNNNNNGC	2 cut(s)	329, 338
NdeII	GATC	3 cut(s)	102, 121, 234
NlaIII	CATG	5 cut(s)	52, 199, 218, 253, 323
NlaIV	GGNNCC	1 cut(s)	372
NspI	RCATGY	2 cut(s)	199, 218
PaeI	GCATGC	1 cut(s)	199
PfeI	GAWTC	3 cut(s)	70, 355, 422
PkrI	GCNGC	2 cut(s)	55, 162
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PpuMI	RGGWCCY	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	371
Psp6I	CCWGG	2 cut(s)	373, 426
PspGI	CCWGG	2 cut(s)	373, 426
PspN4I	GGNNCC	1 cut(s)	372
PspPI	GGNCC	1 cut(s)	371
PspPPI	RGGWCCY	1 cut(s)	371
PstNI	CAGNNNCTG	1 cut(s)	341
RsaI	GTAC	2 cut(s)	248, 317
RsaNI	GTAC	2 cut(s)	247, 316
SaqAI	TTAA	4 cut(s)	156, 275, 297, 462
SatI	GCNGC	2 cut(s)	54, 161
Sau3AI	GATC	3 cut(s)	102, 121, 234
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	2 cut(s)	375, 428
SetI	ASST	8 cut(s)	12, 99, 162, 192, 343, 483, 600, 615
SfaNI	GCATC	2 cut(s)	196, 341
SfcI	CTRYAG	1 cut(s)	501
SinI	GGWCC	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
SphI	GCATGC	1 cut(s)	199
Sse9I	AATT	6 cut(s)	115, 290, 438, 459, 531, 586
StyD4I	CCNGG	2 cut(s)	373, 426
StyI	CCWWGG	1 cut(s)	60
TaiI	ACGT	1 cut(s)	600
TasI	AATT	6 cut(s)	115, 290, 438, 459, 531, 586
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	3 cut(s)	70, 355, 422
Tru1I	TTAA	4 cut(s)	156, 275, 297, 462
Tru9I	TTAA	4 cut(s)	156, 275, 297, 462
TscAI	CASTG	2 cut(s)	151, 270
TseI	GCWGC	2 cut(s)	53, 160
TspDTI	ATGAA	1 cut(s)	200
TspRI	CASTG	2 cut(s)	151, 270
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	2 cut(s)	438, 531
XceI	RCATGY	2 cut(s)	199, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.