Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Forward (+)

41138666 .. 41140695

Gene Structure 2030 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G027700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAGTAAGCTTCAGAGTGATACTCTCAGGGAGGCTATCTCTATCATCATGGCTGCTTCCAAGGAAAAGAGTCGTAAGTTCACAGAAACCATAGAACTTCAGATTGGGCTGAAAAATTATGATCCCCAAAAGGACAAGCGTTTCAGTGGTTCCGTTAAGTTGCCACACATTCCTCGTCCAAAGATGAAGGTCTGCATGCTTGGAGATGCTCAGCATGTTGAAGAGGCTCAGAAGATCGGTTTGGAGTTCATGGATGTAGAAGCGCTGAAGAAGTTAAACAAGAACAAGAAATTGGTTAAGAAACTGGCTAAGAAGTACCATGCCTTTTTAGCATCAGAAGCTGTTATCAAGCAGATTCCCCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGAAAGTTCCCAACCCTTGTTTCTCACCAAGAATCCCTAGAGTCTAAAATTTCTGAGACAAAAGCAACAATTAAGTTCCAATTGAAGAAGGTTCTTTGCATGGGAGTTGCTGTAGGGAATGTCTCAATGGAGGAGAAGCAAATCTTCCAAAATGTGCAATTGAGTGTGAACTTCCTTGTTTCACTATTGAAAAAAAATTGGCAAAATGTAAAGTGCTTGAACCTGAAGACCACTATGGGGAAGCCATATCGCATTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

216

Amino Acids

24.47

Weight (kDa)

9.92

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	21 - 210	1.8e-51	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	438
AcuI	CTGAAG	3 cut(s)	83, 287, 635
AfaI	GTAC	1 cut(s)	317
AfeI	AGCGCT	1 cut(s)	264
AfiI	CCNNNNNNNGG	2 cut(s)	367, 627
AgsI	TTSAA	4 cut(s)	221, 475, 580, 610
AjnI	CCWGG	1 cut(s)	373
AjuI	GAANNNNNNNTTGG	8 cut(s)	87, 119, 224, 256, 275, 307, 394, 426
AluBI	AGCT	2 cut(s)	10, 341
AluI	AGCT	2 cut(s)	10, 341
Alw26I	GTCTC	3 cut(s)	383, 440, 517
AlwI	GGATC	1 cut(s)	116
AlwNI	CAGNNNCTG	1 cut(s)	341
Aor51HI	AGCGCT	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	438
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	371
BbsI	GAAGAC	1 cut(s)	623
BbvI	GCAGC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	375
BcoDI	GTCTC	3 cut(s)	383, 440, 517
BfaI	CTAG	1 cut(s)	428
BfmI	CTRYAG	1 cut(s)	501
BfoI	RGCGCY	1 cut(s)	266
BisI	GCNGC	1 cut(s)	54
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	2 cut(s)	151, 372
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	2 cut(s)	196, 341
BpiI	GAAGAC	1 cut(s)	623
BplI	GAGNNNNNCTC	4 cut(s)	7, 39, 23, 55
Bpu1102I	GCTNAGC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 627
Bse1I	ACTGG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	367, 627
BseMII	CTCAG	4 cut(s)	40, 224, 242, 435
BseNI	ACTGG	1 cut(s)	309
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	1 cut(s)	40
BslI	CCNNNNNNNGG	2 cut(s)	367, 627
BsmAI	GTCTC	3 cut(s)	383, 440, 517
Bso31I	GGTCTC	1 cut(s)	383
Bsp143I	GATC	2 cut(s)	121, 234
Bsp1720I	GCTNAGC	1 cut(s)	210
BspCNI	CTCAG	4 cut(s)	39, 223, 241, 436
BspLI	GGNNCC	2 cut(s)	151, 372
BspPI	GGATC	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	383
BsrI	ACTGG	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	2 cut(s)	121, 234
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	375
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	5 cut(s)	26, 210, 228, 309, 444
BstF5I	GGATG	1 cut(s)	259
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	2 cut(s)	124, 237
BstMAI	GTCTC	3 cut(s)	383, 440, 517
BstMBI	GATC	2 cut(s)	121, 234
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 338
BstNI	CCWGG	1 cut(s)	375
BstNSI	RCATGY	2 cut(s)	199, 218
BstSCI	CCNGG	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	1 cut(s)	623
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	197
CaiI	CAGNNNCTG	1 cut(s)	341
CfoI	GCGC	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	371
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	6 cut(s)	49, 196, 215, 250, 320, 490
CviJI	RGCY	8 cut(s)	10, 35, 53, 109, 227, 308, 341, 634
CviKI_1	RGCY	8 cut(s)	10, 35, 53, 109, 227, 308, 341, 634
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	5 cut(s)	26, 210, 228, 309, 444
DpnI	GATC	2 cut(s)	123, 236
DpnII	GATC	2 cut(s)	121, 234
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	371
Eco47III	AGCGCT	1 cut(s)	264
Eco57I	CTGAAG	3 cut(s)	83, 287, 635
EcoO109I	RGGNCCY	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	6 cut(s)	52, 199, 218, 253, 323, 493
FalI	AAGNNNNNCTT	2 cut(s)	518, 550
FatI	CATG	6 cut(s)	48, 195, 214, 249, 319, 489
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	54
HaeII	RGCGCY	1 cut(s)	266
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	6 cut(s)	52, 199, 218, 253, 323, 493
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	4 cut(s)	70, 355, 422, 431
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	2 cut(s)	81, 559
Hpy188I	TCNGA	5 cut(s)	15, 102, 231, 337, 445
Hpy8I	GTNNAC	2 cut(s)	81, 559
HpyAV	CCTTC	2 cut(s)	181, 472
HpyCH4V	TGCA	3 cut(s)	195, 489, 547
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 338
HpyF3I	CTNAG	5 cut(s)	26, 210, 228, 309, 444
Hsp92II	CATG	6 cut(s)	52, 199, 218, 253, 323, 493
HspAI	GCGC	1 cut(s)	263
Kzo9I	GATC	2 cut(s)	121, 234
LpnPI	CCDG	6 cut(s)	13, 290, 360, 375, 387, 626
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	2 cut(s)	196, 341
MaeI	CTAG	1 cut(s)	428
MalI	GATC	2 cut(s)	123, 236
MboI	GATC	2 cut(s)	121, 234
MboII	GAAGA	6 cut(s)	233, 244, 280, 487, 526, 628
MfeI	CAATTG	2 cut(s)	470, 548
MluCI	AATT	7 cut(s)	115, 290, 438, 459, 470, 548, 586
MlyI	GAGTC	2 cut(s)	79, 440
MnlI	CCTC	4 cut(s)	25, 183, 217, 514
MseI	TTAA	4 cut(s)	156, 275, 297, 462
MspR9I	CCNGG	1 cut(s)	375
MunI	CAATTG	2 cut(s)	470, 548
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	2 cut(s)	329, 338
NdeII	GATC	2 cut(s)	121, 234
NlaIII	CATG	6 cut(s)	52, 199, 218, 253, 323, 493
NlaIV	GGNNCC	2 cut(s)	151, 372
NspI	RCATGY	2 cut(s)	199, 218
PaeI	GCATGC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	355, 422
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	2 cut(s)	78, 439
PpsI	GAGTC	2 cut(s)	78, 439
PpuMI	RGGWCCY	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	151, 372
PspPI	GGNCC	1 cut(s)	371
PspPPI	RGGWCCY	1 cut(s)	371
PstNI	CAGNNNCTG	1 cut(s)	341
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SaqAI	TTAA	4 cut(s)	156, 275, 297, 462
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	2 cut(s)	121, 234
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	2 cut(s)	79, 440
ScrFI	CCNGG	1 cut(s)	375
SetI	ASST	5 cut(s)	12, 192, 343, 483, 615
SfaNI	GCATC	2 cut(s)	196, 341
SfcI	CTRYAG	1 cut(s)	501
SinI	GGWCC	1 cut(s)	371
SphI	GCATGC	1 cut(s)	199
Sse9I	AATT	7 cut(s)	115, 290, 438, 459, 470, 548, 586
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	1 cut(s)	373
StyI	CCWWGG	1 cut(s)	60
TasI	AATT	7 cut(s)	115, 290, 438, 459, 470, 548, 586
TfiI	GAWTC	2 cut(s)	355, 422
Tru1I	TTAA	4 cut(s)	156, 275, 297, 462
Tru9I	TTAA	4 cut(s)	156, 275, 297, 462
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	2 cut(s)	200, 238
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	1 cut(s)	438
XceI	RCATGY	2 cut(s)	199, 218
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.