Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Forward (+)

19288987 .. 19291179

Gene Structure 2193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG213200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGATTAGGGATAGCTATGTGTTTGTAGTGATTTATACGTATTGGGTATTTGCTTATTGTTTACTGTTGTTTGGTATCAGCAAGCTGCAAAGTGAGGCATTGAGGGAGGCCATCTCCCAGATTAAGACTAATTCGGAGACGAAGAAGAGGAAGTTCACCGAGACAGTGGAGTTGCAAATTGGGTTGAAGAACTATGACCCACAAAAGGACAAGCGTTTCAGTGGTTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGGTTTGCATGCTTGGAGATGCTCAGCATGTTGAAGAGGCAGAGAAGATGGGATTGGCCTACATGGATGTGGAATCGCTGAAAAAGCTTAACAAGAACAAGAAGCTGGTCAAGAAGCTTGCAAAGAAGTATCATGCATTTTTGGCTTCTGAAGCTGTCATCAAGCAAATTCCTCGTCTTTTGGGCCCTGGTCTTAACAAGGCAGGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

157

Amino Acids

18.01

Weight (kDa)

9.84

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	46 - 157	6.8e-28	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	429
AcuI	CTGAAG	1 cut(s)	432
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	2 cut(s)	187, 296
AjnI	CCWGG	1 cut(s)	448
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AluBI	AGCT	7 cut(s)	15, 85, 235, 349, 367, 379, 416
AluI	AGCT	7 cut(s)	15, 85, 235, 349, 367, 379, 416
Alw26I	GTCTC	2 cut(s)	131, 155
AoxI	GGCC	3 cut(s)	108, 318, 445
ApaI	GGGCCC	1 cut(s)	449
ApeKI	GCWGC	1 cut(s)	85
ApoI	RAATTY	1 cut(s)	429
ArsI	GACNNNNNNTTYG	2 cut(s)	421, 453
AspS9I	GGNCC	2 cut(s)	445, 446
AsuHPI	GGTGA	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	449
BanII	GRGCYC	1 cut(s)	449
BbvI	GCAGC	1 cut(s)	72
BccI	CCATC	2 cut(s)	119, 304
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	1 cut(s)	450
BcoDI	GTCTC	2 cut(s)	131, 155
BisI	GCNGC	1 cut(s)	86
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	87
Bme1390I	CCNGG	1 cut(s)	450
BmgT120I	GGNCC	2 cut(s)	445, 446
BmiI	GGNNCC	2 cut(s)	226, 447
BmrFI	CCNGG	1 cut(s)	450
BmsI	GCATC	1 cut(s)	271
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
Bpu1102I	GCTNAGC	1 cut(s)	285
BsaAI	YACGTR	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	299
BseSI	GKGCMC	1 cut(s)	449
BseXI	GCAGC	1 cut(s)	72
BshFI	GGCC	3 cut(s)	110, 320, 447
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	2 cut(s)	131, 155
BsmBI	CGTCTC	1 cut(s)	131
BsnI	GGCC	3 cut(s)	110, 320, 447
Bsp120I	GGGCCC	1 cut(s)	445
Bsp1286I	GDGCHC	1 cut(s)	449
Bsp1720I	GCTNAGC	1 cut(s)	285
BspANI	GGCC	3 cut(s)	110, 320, 447
BspCNI	CTCAG	1 cut(s)	298
BspLI	GGNNCC	2 cut(s)	226, 447
BssECI	CCNNGG	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	2 cut(s)	66, 166
Bst6I	CTCTTC	2 cut(s)	140, 291
BstBAI	YACGTR	1 cut(s)	39
BstC8I	GCNNGC	4 cut(s)	83, 272, 381, 466
BstDEI	CTNAG	2 cut(s)	255, 285
BstF5I	GGATG	1 cut(s)	334
BstMAI	GTCTC	2 cut(s)	131, 155
BstMWI	GCNNNNNNNGC	3 cut(s)	346, 404, 413
BstNI	CCWGG	1 cut(s)	450
BstNSI	RCATGY	2 cut(s)	274, 293
BstSCI	CCNGG	1 cut(s)	448
BstSLI	GKGCMC	1 cut(s)	449
BstSNI	TACGTA	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	72
BsuRI	GGCC	3 cut(s)	110, 320, 447
BtsCI	GGATG	1 cut(s)	334
BtsIMutI	CAGTG	2 cut(s)	171, 226
Cac8I	GCNNGC	4 cut(s)	83, 272, 381, 466
Cfr13I	GGNCC	2 cut(s)	445, 446
CviAII	CATG	4 cut(s)	271, 290, 325, 395
DdeI	CTNAG	2 cut(s)	255, 285
Eam1104I	CTCTTC	2 cut(s)	140, 291
EarI	CTCTTC	2 cut(s)	140, 291
Eco105I	TACGTA	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	449
Eco57I	CTGAAG	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	448
EcoT22I	ATGCAT	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	449
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	4 cut(s)	274, 293, 328, 398
FaiI	YATR	7 cut(s)	18, 36, 195, 272, 291, 326, 396
FatI	CATG	4 cut(s)	270, 289, 324, 394
Fnu4HI	GCNGC	1 cut(s)	86
FokI	GGATG	1 cut(s)	341
FriOI	GRGCYC	1 cut(s)	449
Fsp4HI	GCNGC	1 cut(s)	86
GluI	GCNGC	1 cut(s)	86
HaeIII	GGCC	3 cut(s)	110, 320, 447
Hin1II	CATG	4 cut(s)	274, 293, 328, 398
HindIII	AAGCTT	3 cut(s)	233, 347, 377
HinfI	GANTC	1 cut(s)	335
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	2 cut(s)	62, 156
Hpy188I	TCNGA	2 cut(s)	136, 412
Hpy188III	TCNNGA	1 cut(s)	373
Hpy8I	GTNNAC	2 cut(s)	62, 156
HpyCH4III	ACNGT	2 cut(s)	66, 166
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	5 cut(s)	88, 175, 270, 383, 398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	346, 404, 413
HpyF3I	CTNAG	2 cut(s)	255, 285
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	4 cut(s)	274, 293, 328, 398
LpnPI	CCDG	5 cut(s)	131, 353, 435, 450, 462
Lsp1109I	GCAGC	1 cut(s)	72
LweI	GCATC	1 cut(s)	271
MaeII	ACGT	1 cut(s)	38
MboII	GAAGA	5 cut(s)	154, 157, 199, 308, 319
MhlI	GDGCHC	1 cut(s)	449
MluCI	AATT	3 cut(s)	130, 177, 429
MnlI	CCTC	8 cut(s)	88, 96, 100, 141, 255, 258, 292, 444
Mph1103I	ATGCAT	1 cut(s)	400
MseI	TTAA	3 cut(s)	123, 351, 456
MslI	CAYNNNNRTG	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	3 cut(s)	346, 404, 413
NlaIII	CATG	4 cut(s)	274, 293, 328, 398
NlaIV	GGNNCC	2 cut(s)	226, 447
NsiI	ATGCAT	1 cut(s)	400
NspI	RCATGY	2 cut(s)	274, 293
PaeI	GCATGC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	87
Ppu21I	YACGTR	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	2 cut(s)	226, 447
PspOMI	GGGCCC	1 cut(s)	445
PspPI	GGNCC	2 cut(s)	445, 446
RseI	CAYNNNNRTG	1 cut(s)	329
SaqAI	TTAA	3 cut(s)	123, 351, 456
SatI	GCNGC	1 cut(s)	86
Sau96I	GGNCC	2 cut(s)	445, 446
ScrFI	CCNGG	1 cut(s)	450
SduI	GDGCHC	1 cut(s)	449
SetI	ASST	8 cut(s)	17, 41, 87, 237, 351, 369, 381, 418
SfaNI	GCATC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	329
SnaBI	TACGTA	1 cut(s)	39
SphI	GCATGC	1 cut(s)	274
Sse9I	AATT	3 cut(s)	130, 177, 429
StyD4I	CCNGG	1 cut(s)	448
TaaI	ACNGT	2 cut(s)	66, 166
TaiI	ACGT	1 cut(s)	41
TasI	AATT	3 cut(s)	130, 177, 429
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	3 cut(s)	123, 351, 456
Tru9I	TTAA	3 cut(s)	123, 351, 456
TscAI	CASTG	2 cut(s)	171, 226
TseI	GCWGC	1 cut(s)	85
TspGWI	ACGGA	1 cut(s)	217
TspRI	CASTG	2 cut(s)	171, 226
XapI	RAATTY	1 cut(s)	429
XceI	RCATGY	2 cut(s)	274, 293
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.