Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Reverse (-)

10907825 .. 10909605

Gene Structure 1781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0133600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCAGGGTTCAACAGCCAAAGATGGTCTCTAAAGGGTATGACCGCCCTTGTTACCGGTGGAACTAAAGGCATTGGATATGCCATTGTGGAAGAGCTAGCCGGACTCGGGGCAACTGTGCATACCTGTGCTCGCAACCAAGAACAGATCGACGAGAGGGTTCAAGAATGGAAGAGCAAGGGGTTTAAAGTGAGTGGCACAGTTTGTGACCTCACGTCCAAATCTCAAAGGGAGGAGCTCATTAAAACTGTCTCGTCTGTCTTTGATGGCAAGCTCAACATCCTTGTAAATAATGCTGCTTCAGTTACCCTGAGAAGAACCGAAGAATATACTTTAGAAGATTTATCAAGTATGATGGGTACCAATGTTGAATCTTCTTACCATCTCTGTCAACTTTCATACCCTCTCTTAAAGGCCTCAGAAAATGCAAGTATTGTATTTATCGCCTCCATAGCTGGTGCCATAGCTCTACCTAGACTATCTGCTTATGCAGCAACAAAGAGTGCTGTTATCCAAATTTCAAAGAACTTGGCATGTGAGTGGGCAAGAGACAAAATTCGAACAAACACTGTAGCGCCATGGGCTGTCAACACCGGTGTTAAAGTTGAAAATGATGATCATTCTGAGGATTTCAGACGATTAATAGGTCGAACTCCAATTCGTCGTGTTGCTGAGCCTAATGAAATTTCATCCTTGGTCTCTTTCCTCTGCCTTCCTGCTGCTTCTTACATCAATGGACAGGTTGTTAATGTTGATGGAGGATTTACAGTGAGCGGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

260

Amino Acids

28.18

Weight (kDa)

7.62

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	15 - 205	2.3e-47	short chain dehydrogenase
KR	PF08659	15 - 169	7.6e-15	KR domain
adh_short_C2	PF13561	23 - 256	3.9e-52	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	359
AccB1I	GGYRCC	2 cut(s)	359, 458
AccBSI	CCGCTC	1 cut(s)	774
AciI	CCGC	2 cut(s)	45, 774
AcsI	RAATTY	3 cut(s)	516, 555, 684
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	1 cut(s)	361
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgeI	ACCGGT	2 cut(s)	56, 593
AgsI	TTSAA	5 cut(s)	13, 164, 371, 522, 608
AhdI	GACNNNNNGTC	1 cut(s)	214
AjiI	CACGTC	1 cut(s)	216
AluBI	AGCT	5 cut(s)	97, 238, 274, 455, 467
AluI	AGCT	5 cut(s)	97, 238, 274, 455, 467
Alw21I	GWGCWC	2 cut(s)	133, 240
Alw26I	GTCTC	4 cut(s)	33, 256, 543, 703
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	3 cut(s)	296, 491, 719
ApoI	RAATTY	3 cut(s)	516, 555, 684
AseI	ATTAAT	1 cut(s)	641
AsiGI	ACCGGT	2 cut(s)	56, 593
Asp718I	GGTACC	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	577
AsuII	TTCGAA	1 cut(s)	559
AsuNHI	GCTAGC	1 cut(s)	97
AvaI	CYCGRG	1 cut(s)	107
BaeI	ACNNNNGTAYC	2 cut(s)	351, 384
BanI	GGYRCC	2 cut(s)	359, 458
BanII	GRGCYC	1 cut(s)	240
Bbv12I	GWGCWC	2 cut(s)	133, 240
BbvI	GCAGC	3 cut(s)	283, 503, 706
BccI	CCATC	5 cut(s)	18, 260, 349, 390, 749
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	4 cut(s)	33, 256, 543, 703
BfaI	CTAG	3 cut(s)	98, 474, 781
BfmI	CTRYAG	1 cut(s)	570
BfoI	RGCGCY	1 cut(s)	578
BisI	GCNGC	3 cut(s)	297, 492, 720
BlpI	GCTNAGC	1 cut(s)	672
BlsI	GCNGC	3 cut(s)	298, 493, 721
BmeRI	GACNNNNNGTC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	107
BmgBI	CACGTC	1 cut(s)	216
BmiI	GGNNCC	2 cut(s)	361, 460
BmtI	GCTAGC	1 cut(s)	101
Bpu1102I	GCTNAGC	1 cut(s)	672
Bpu14I	TTCGAA	1 cut(s)	559
BsaI	GGTCTC	2 cut(s)	33, 703
BsaJI	CCNNGG	2 cut(s)	578, 693
BsaWI	WCCGGW	2 cut(s)	56, 593
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse118I	RCCGGY	2 cut(s)	56, 593
BseDI	CCNNGG	2 cut(s)	578, 693
BseGI	GGATG	2 cut(s)	279, 689
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMII	CTCAG	4 cut(s)	302, 432, 615, 663
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	3 cut(s)	283, 503, 706
BshFI	GGCC	1 cut(s)	416
BshNI	GGYRCC	2 cut(s)	359, 458
BshTI	ACCGGT	2 cut(s)	56, 593
BsiHKAI	GWGCWC	2 cut(s)	133, 240
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	3 cut(s)	57, 102, 594
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	4 cut(s)	33, 256, 543, 703
BsnI	GGCC	1 cut(s)	416
Bso31I	GGTCTC	2 cut(s)	33, 703
BsoBI	CYCGRG	1 cut(s)	107
Bsp119I	TTCGAA	1 cut(s)	559
Bsp1286I	GDGCHC	2 cut(s)	133, 240
Bsp143I	GATC	2 cut(s)	147, 616
Bsp1720I	GCTNAGC	1 cut(s)	672
Bsp19I	CCATGG	1 cut(s)	578
BspACI	CCGC	2 cut(s)	45, 774
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	4 cut(s)	303, 431, 616, 664
BspLI	GGNNCC	2 cut(s)	361, 460
BspOI	GCTAGC	1 cut(s)	101
BspQI	GCTCTTC	2 cut(s)	87, 167
BspT104I	TTCGAA	1 cut(s)	559
BspT107I	GGYRCC	2 cut(s)	359, 458
BspTNI	GGTCTC	2 cut(s)	33, 703
BsrBI	CCGCTC	1 cut(s)	774
BsrFI	RCCGGY	2 cut(s)	56, 593
BssAI	RCCGGY	2 cut(s)	56, 593
BssECI	CCNNGG	2 cut(s)	578, 693
BssMI	GATC	2 cut(s)	147, 616
BssT1I	CCWWGG	2 cut(s)	578, 693
Bst4CI	ACNGT	5 cut(s)	118, 202, 250, 571, 769
Bst6I	CTCTTC	2 cut(s)	87, 167
BstBI	TTCGAA	1 cut(s)	559
BstC8I	GCNNGC	3 cut(s)	99, 133, 272
BstDEI	CTNAG	4 cut(s)	311, 418, 624, 672
BstDSI	CCRYGG	1 cut(s)	578
BstF5I	GGATG	2 cut(s)	279, 689
BstH2I	RGCGCY	1 cut(s)	578
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	2 cut(s)	150, 619
BstMAI	GTCTC	4 cut(s)	33, 256, 543, 703
BstMBI	GATC	2 cut(s)	147, 616
BstMWI	GCNNNNNNNGC	3 cut(s)	452, 491, 581
BstNSI	RCATGY	1 cut(s)	537
BstSFI	CTRYAG	1 cut(s)	570
BstV1I	GCAGC	3 cut(s)	283, 503, 706
BsuRI	GGCC	1 cut(s)	416
BtgI	CCRYGG	1 cut(s)	578
BtrI	CACGTC	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	279, 689
BtsIMutI	CAGTG	2 cut(s)	567, 774
Cac8I	GCNNGC	3 cut(s)	99, 133, 272
CfoI	GCGC	1 cut(s)	577
Cfr10I	RCCGGY	2 cut(s)	56, 593
Csp6I	GTAC	1 cut(s)	360
CspAI	ACCGGT	2 cut(s)	56, 593
CviAII	CATG	2 cut(s)	534, 579
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	4 cut(s)	311, 418, 624, 672
DpnI	GATC	2 cut(s)	149, 618
DpnII	GATC	2 cut(s)	147, 616
DraI	TTTAAA	1 cut(s)	187
DriI	GACNNNNNGTC	1 cut(s)	214
Eam1104I	CTCTTC	2 cut(s)	87, 167
Eam1105I	GACNNNNNGTC	1 cut(s)	214
EarI	CTCTTC	2 cut(s)	87, 167
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	2 cut(s)	578, 693
Eco147I	AGGCCT	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	240
Eco31I	GGTCTC	2 cut(s)	33, 703
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	107
EcoICRI	GAGCTC	1 cut(s)	238
EcoT14I	CCWWGG	2 cut(s)	578, 693
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	2 cut(s)	578, 693
FaeI	CATG	2 cut(s)	537, 582
FatI	CATG	2 cut(s)	533, 578
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	3 cut(s)	297, 492, 720
FokI	GGATG	2 cut(s)	266, 676
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	3 cut(s)	297, 492, 720
FspBI	CTAG	3 cut(s)	98, 474, 781
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	3 cut(s)	297, 492, 720
HaeII	RGCGCY	1 cut(s)	578
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	3 cut(s)	57, 102, 594
HhaI	GCGC	1 cut(s)	577
Hin1II	CATG	2 cut(s)	537, 582
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HincII	GTYRAC	2 cut(s)	392, 589
HindII	GTYRAC	2 cut(s)	392, 589
HinfI	GANTC	2 cut(s)	105, 371
HpaII	CCGG	3 cut(s)	57, 102, 594
Hpy166II	GTNNAC	2 cut(s)	392, 589
Hpy188I	TCNGA	3 cut(s)	421, 625, 635
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	2 cut(s)	392, 589
Hpy99I	CGWCG	2 cut(s)	155, 666
HpyAV	CCTTC	1 cut(s)	722
HpyCH4III	ACNGT	5 cut(s)	118, 202, 250, 571, 769
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	3 cut(s)	121, 428, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	452, 491, 581
HpyF3I	CTNAG	4 cut(s)	311, 418, 624, 672
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	2 cut(s)	537, 582
HspAI	GCGC	1 cut(s)	575
KpnI	GGTACC	1 cut(s)	363
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	2 cut(s)	147, 616
LguI	GCTCTTC	2 cut(s)	87, 167
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	8 cut(s)	70, 115, 139, 323, 441, 607, 725, 729
Lsp1109I	GCAGC	3 cut(s)	283, 503, 706
MaeI	CTAG	3 cut(s)	98, 474, 781
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	3 cut(s)	52, 206, 304
MalI	GATC	2 cut(s)	149, 618
MbiI	CCGCTC	1 cut(s)	774
MboI	GATC	2 cut(s)	147, 616
MboII	GAAGA	6 cut(s)	104, 184, 327, 335, 350, 366
MhlI	GDGCHC	2 cut(s)	133, 240
MluCI	AATT	4 cut(s)	516, 555, 657, 684
MlyI	GAGTC	1 cut(s)	99
MnlI	CCTC	9 cut(s)	150, 221, 226, 414, 427, 457, 619, 716, 752
MseI	TTAA	6 cut(s)	186, 243, 410, 600, 641, 747
MslI	CAYNNNNRTG	2 cut(s)	126, 538
MspI	CCGG	3 cut(s)	57, 102, 594
MwoI	GCNNNNNNNGC	3 cut(s)	452, 491, 581
NcoI	CCATGG	1 cut(s)	578
NdeII	GATC	2 cut(s)	147, 616
NheI	GCTAGC	1 cut(s)	97
NlaIII	CATG	2 cut(s)	537, 582
NlaIV	GGNNCC	2 cut(s)	361, 460
NmuCI	GTSAC	1 cut(s)	206
NspI	RCATGY	1 cut(s)	537
NspV	TTCGAA	1 cut(s)	559
PceI	AGGCCT	1 cut(s)	416
PciSI	GCTCTTC	2 cut(s)	87, 167
PfeI	GAWTC	1 cut(s)	371
PinAI	ACCGGT	2 cut(s)	56, 593
PkrI	GCNGC	3 cut(s)	298, 493, 721
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
PshBI	ATTAAT	1 cut(s)	641
Psp124BI	GAGCTC	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	361, 460
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
RseI	CAYNNNNRTG	2 cut(s)	126, 538
SacI	GAGCTC	1 cut(s)	240
SapI	GCTCTTC	2 cut(s)	87, 167
SaqAI	TTAA	6 cut(s)	186, 243, 410, 600, 641, 747
SatI	GCNGC	3 cut(s)	297, 492, 720
Sau3AI	GATC	2 cut(s)	147, 616
SchI	GAGTC	1 cut(s)	99
SduI	GDGCHC	2 cut(s)	133, 240
SfcI	CTRYAG	1 cut(s)	570
SfuI	TTCGAA	1 cut(s)	559
SgrAI	CRCCGGYG	1 cut(s)	593
SmiMI	CAYNNNNRTG	2 cut(s)	126, 538
Sse9I	AATT	4 cut(s)	516, 555, 657, 684
SseBI	AGGCCT	1 cut(s)	416
SsiI	CCGC	2 cut(s)	45, 774
SspMI	CTAG	3 cut(s)	98, 474, 781
SstI	GAGCTC	1 cut(s)	240
StuI	AGGCCT	1 cut(s)	416
StyI	CCWWGG	2 cut(s)	578, 693
TaaI	ACNGT	5 cut(s)	118, 202, 250, 571, 769
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	3 cut(s)	150, 559, 649
TasI	AATT	4 cut(s)	516, 555, 657, 684
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	6 cut(s)	186, 243, 410, 600, 641, 747
Tru9I	TTAA	6 cut(s)	186, 243, 410, 600, 641, 747
TscAI	CASTG	2 cut(s)	574, 774
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	3 cut(s)	296, 491, 719
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	3 cut(s)	387, 678, 696
TspRI	CASTG	2 cut(s)	574, 774
VspI	ATTAAT	1 cut(s)	641
XapI	RAATTY	3 cut(s)	516, 555, 684
XceI	RCATGY	1 cut(s)	537
XspI	CTAG	3 cut(s)	98, 474, 781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.