Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Forward (+)

39917948 .. 39918589

Gene Structure 642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32276

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTGTCTCTATAGTAAGATTCAGAGTAATTCTCTTAGGGAGGCTATTTCTATCATCAAGGCCGCTTCCAAGGAAAAGAGTCATAAGTTGACAGAAACTACAAAACTTCAGATTGGGCTGAAAAATTATGATCCCCAAAAGGACAAGCGTTTCAGTGGTTCCGTTAAGTTGCCACACATTCCTCGTCCAAAGATGAAGGTCTGCATGCTTGGAGATGCTCAGCATGTTGAAGAGGCTCAGAAGATCGATTTGGAGTACATGGATGTAGAAGCGCTGAAGAAGTTAAACAAGAACAAGAAATTGGATAAGGAACTGGCTAAAAAGTACCATGCCTCTTTAGCATCAGAAGTTGTTATCAAGCAGACTCCCCGTCTTTTGGGTCCTGGTCTCAACAAGGCATGTTGGTACAAGAGCCATGTTTTTAGTGCTGATTGCTTTGGTAAAAGGCTGGTTCGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

153

Amino Acids

17.41

Weight (kDa)

9.74

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	24 - 132	5.8e-21	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	1 cut(s)	125
AcuI	CTGAAG	2 cut(s)	92, 296
AfaI	GTAC	4 cut(s)	257, 326, 407, 457
AfeI	AGCGCT	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	376
AgsI	TTSAA	1 cut(s)	230
AhdI	GACNNNNNGTC	1 cut(s)	369
AjnI	CCWGG	1 cut(s)	382
AjuI	GAANNNNNNNTTGG	4 cut(s)	233, 265, 284, 316
Alw26I	GTCTC	2 cut(s)	11, 392
AlwI	GGATC	1 cut(s)	125
Aor51HI	AGCGCT	1 cut(s)	273
AoxI	GGCC	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	274
AspS9I	GGNCC	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	380
BciT130I	CCWGG	1 cut(s)	384
BcoDI	GTCTC	2 cut(s)	11, 392
BfmI	CTRYAG	1 cut(s)	10
BfoI	RGCGCY	1 cut(s)	275
BisI	GCNGC	1 cut(s)	63
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	384
Bme18I	GGWCC	1 cut(s)	380
BmeRI	GACNNNNNGTC	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	2 cut(s)	160, 381
BmrFI	CCNGG	1 cut(s)	384
BmsI	GCATC	2 cut(s)	205, 350
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
Bpu1102I	GCTNAGC	1 cut(s)	219
Bsa29I	ATCGAT	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse1I	ACTGG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	384
BseCI	ATCGAT	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMII	CTCAG	2 cut(s)	233, 251
BseNI	ACTGG	1 cut(s)	318
BshFI	GGCC	1 cut(s)	62
BshVI	ATCGAT	1 cut(s)	246
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmAI	GTCTC	2 cut(s)	11, 392
BsnI	GGCC	1 cut(s)	62
Bso31I	GGTCTC	1 cut(s)	392
Bsp143I	GATC	2 cut(s)	130, 243
Bsp1720I	GCTNAGC	1 cut(s)	219
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	2 cut(s)	232, 250
BspDI	ATCGAT	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	160, 381
BspPI	GGATC	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	392
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	130, 243
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	384
Bst6I	CTCTTC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	3 cut(s)	35, 219, 237
BstF5I	GGATG	1 cut(s)	268
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	2 cut(s)	133, 246
BstMAI	GTCTC	2 cut(s)	11, 392
BstMBI	GATC	2 cut(s)	130, 243
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	1 cut(s)	384
BstNSI	RCATGY	3 cut(s)	208, 227, 402
BstSCI	CCNGG	1 cut(s)	382
BstSFI	CTRYAG	1 cut(s)	10
Bsu15I	ATCGAT	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	62
BsuTUI	ATCGAT	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	206
CfoI	GCGC	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	380
ClaI	ATCGAT	1 cut(s)	246
Csp6I	GTAC	4 cut(s)	256, 325, 406, 456
CviAII	CATG	6 cut(s)	205, 224, 259, 329, 399, 416
CviJI	RGCY	7 cut(s)	44, 62, 118, 236, 317, 414, 448
CviKI_1	RGCY	7 cut(s)	44, 62, 118, 236, 317, 414, 448
CviQI	GTAC	4 cut(s)	256, 325, 406, 456
DdeI	CTNAG	3 cut(s)	35, 219, 237
DpnI	GATC	2 cut(s)	132, 245
DpnII	GATC	2 cut(s)	130, 243
DriI	GACNNNNNGTC	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	225
Eam1105I	GACNNNNNGTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	392
Eco47I	GGWCC	1 cut(s)	380
Eco47III	AGCGCT	1 cut(s)	273
Eco57I	CTGAAG	2 cut(s)	92, 296
EcoO109I	RGGNCCY	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	6 cut(s)	208, 227, 262, 332, 402, 419
FatI	CATG	6 cut(s)	204, 223, 258, 328, 398, 415
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	63
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	1 cut(s)	63
HaeII	RGCGCY	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	6 cut(s)	208, 227, 262, 332, 402, 419
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	3 cut(s)	19, 79, 364
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	4 cut(s)	24, 111, 240, 346
Hpy8I	GTNNAC	1 cut(s)	90
HpyAV	CCTTC	1 cut(s)	190
HpyCH4V	TGCA	1 cut(s)	204
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	3 cut(s)	35, 219, 237
Hsp92II	CATG	6 cut(s)	208, 227, 262, 332, 402, 419
HspAI	GCGC	1 cut(s)	272
Kzo9I	GATC	2 cut(s)	130, 243
LpnPI	CCDG	4 cut(s)	299, 369, 396, 434
LweI	GCATC	2 cut(s)	205, 350
MalI	GATC	2 cut(s)	132, 245
MboI	GATC	2 cut(s)	130, 243
MboII	GAAGA	3 cut(s)	242, 253, 289
MluCI	AATT	3 cut(s)	28, 124, 299
MlyI	GAGTC	2 cut(s)	88, 358
MnlI	CCTC	4 cut(s)	34, 192, 226, 343
MseI	TTAA	2 cut(s)	165, 284
MspR9I	CCNGG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	1 cut(s)	338
NdeII	GATC	2 cut(s)	130, 243
NlaIII	CATG	6 cut(s)	208, 227, 262, 332, 402, 419
NlaIV	GGNNCC	2 cut(s)	160, 381
NspI	RCATGY	3 cut(s)	208, 227, 402
PaeI	GCATGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	2 cut(s)	87, 358
PpsI	GAGTC	2 cut(s)	87, 358
PpuMI	RGGWCCY	1 cut(s)	380
Psp5II	RGGWCCY	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	2 cut(s)	160, 381
PspPI	GGNCC	1 cut(s)	380
PspPPI	RGGWCCY	1 cut(s)	380
RsaI	GTAC	4 cut(s)	257, 326, 407, 457
RsaNI	GTAC	4 cut(s)	256, 325, 406, 456
SaqAI	TTAA	2 cut(s)	165, 284
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	2 cut(s)	130, 243
Sau96I	GGNCC	1 cut(s)	380
SchI	GAGTC	2 cut(s)	88, 358
ScrFI	CCNGG	1 cut(s)	384
SetI	ASST	1 cut(s)	201
SfaNI	GCATC	2 cut(s)	205, 350
SfcI	CTRYAG	1 cut(s)	10
SinI	GGWCC	1 cut(s)	380
SphI	GCATGC	1 cut(s)	208
Sse9I	AATT	3 cut(s)	28, 124, 299
SsiI	CCGC	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	1 cut(s)	69
TaqI	TCGA	1 cut(s)	246
TasI	AATT	3 cut(s)	28, 124, 299
TatI	WGTACW	1 cut(s)	255
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	2 cut(s)	165, 284
Tru9I	TTAA	2 cut(s)	165, 284
TscAI	CASTG	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	209
TspGWI	ACGGA	1 cut(s)	151
TspRI	CASTG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	380
XceI	RCATGY	3 cut(s)	208, 227, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.