Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Reverse (-)

13789373 .. 13791865

Gene Structure 2493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G110300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAGTAAGCTCTCAAGTGACGGGCTGAGAGAGGCCATCGCTCAGATTAAGACAAACTCAGAAACGAAAAAGAGAAATTTCACCGAGACAGTTGAACTTCAAATTGGGTTGAAGAACTATGACCCACAAAAGGATAAGCGTTTCAGTGGCTCTGTCAGGCTTCCACATATTCCTCGTCCTAAGATGAGGGTTTGCATGCTTGGGGATGCTCAGCATGTTGAAGAGGCAGAGAAGATGGGTTTGGACTACATGGATGTGGAAAGCTTGAAAAAGCTTAACAAAAACAAGAAACTGGTCAAGAAGCTTGCCAAGAAATACCATGCCTTTTTAGCTTCTGAAGCTGTCATTAAGCAAATTCCTCGTCTTCTAGGCCCTGGTCTTAATAAGGCAGGTAAGTTTCCAACATTGGTGAGTCACCAGGAATCTTTGGAGGCAAAAGTGAATGAAACCAAAGCAATGGTGAAGTTCCAACTTAAGAAGGTTCTTTGCATGGGTGTTGCTGTGGGGAATTTGGCTATGGAGGAGAAGCAGATTTTTCAGAATGTACAACTCAGTGTCAATTTCTTAGTTTCACTATTGAAGAAGAATTGGCAGAATGTGAGGTCCTTGAACCTGAAAAGTACCATGGGGAAAGCAATCCGTATCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

217

Amino Acids

24.47

Weight (kDa)

9.98

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	380
AcsI	RAATTY	3 cut(s)	76, 354, 508
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	2 cut(s)	546, 622
AfiI	CCNNNNNNNGG	1 cut(s)	130
AflII	CTTAAG	1 cut(s)	473
AgsI	TTSAA	7 cut(s)	95, 101, 112, 221, 268, 580, 610
AjnI	CCWGG	2 cut(s)	373, 417
AjuI	GAANNNNNNNTTGG	4 cut(s)	87, 119, 224, 256
AluBI	AGCT	6 cut(s)	10, 264, 274, 304, 332, 341
AluI	AGCT	6 cut(s)	10, 264, 274, 304, 332, 341
Alw26I	GTCTC	1 cut(s)	80
AoxI	GGCC	2 cut(s)	33, 370
ApoI	RAATTY	3 cut(s)	76, 354, 508
ArsI	GACNNNNNNTTYG	2 cut(s)	346, 378
AspS9I	GGNCC	2 cut(s)	371, 603
AsuHPI	GGTGA	4 cut(s)	73, 407, 421, 472
AvaII	GGWCC	1 cut(s)	603
BbsI	GAAGAC	1 cut(s)	356
BccI	CCATC	2 cut(s)	44, 229
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	2 cut(s)	375, 419
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	368
BfrI	CTTAAG	1 cut(s)	473
BfuAI	ACCTGC	1 cut(s)	380
BlpI	GCTNAGC	1 cut(s)	210
Bme1390I	CCNGG	2 cut(s)	375, 419
Bme18I	GGWCC	1 cut(s)	603
BmgT120I	GGNCC	2 cut(s)	371, 603
BmrFI	CCNGG	2 cut(s)	375, 419
BmsI	GCATC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	356
Bpu1102I	GCTNAGC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	373, 624
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	462
BseBI	CCWGG	2 cut(s)	375, 419
BseDI	CCNNGG	2 cut(s)	373, 624
BseGI	GGATG	2 cut(s)	211, 259
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	5 cut(s)	17, 56, 72, 224, 565
BseNI	ACTGG	1 cut(s)	297
BseRI	GAGGAG	1 cut(s)	536
BshFI	GGCC	2 cut(s)	35, 372
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	35, 372
Bsp1407I	TGTACA	1 cut(s)	544
Bsp1720I	GCTNAGC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	624
BspANI	GGCC	2 cut(s)	35, 372
BspCNI	CTCAG	5 cut(s)	18, 55, 71, 223, 564
BspMI	ACCTGC	1 cut(s)	380
BspTI	CTTAAG	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	462
BsrGI	TGTACA	1 cut(s)	544
BsrI	ACTGG	1 cut(s)	297
BssECI	CCNNGG	2 cut(s)	373, 624
BssT1I	CCWWGG	1 cut(s)	624
Bst2UI	CCWGG	2 cut(s)	375, 419
Bst4CI	ACNGT	1 cut(s)	91
Bst6I	CTCTTC	1 cut(s)	216
BstAFI	CTTAAG	1 cut(s)	473
BstAUI	TGTACA	1 cut(s)	544
BstC8I	GCNNGC	2 cut(s)	197, 306
BstDEI	CTNAG	7 cut(s)	26, 42, 58, 180, 210, 551, 565
BstDSI	CCRYGG	1 cut(s)	624
BstF5I	GGATG	2 cut(s)	211, 259
BstMAI	GTCTC	1 cut(s)	80
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 338
BstNI	CCWGG	2 cut(s)	375, 419
BstNSI	RCATGY	2 cut(s)	199, 218
BstSCI	CCNGG	2 cut(s)	373, 417
BstV2I	GAAGAC	1 cut(s)	356
BstXI	CCANNNNNNTGG	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	35, 372
BtgI	CCRYGG	1 cut(s)	624
BtgZI	GCGATG	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	211, 259
BtsIMutI	CAGTG	2 cut(s)	151, 559
BveI	ACCTGC	1 cut(s)	380
Cac8I	GCNNGC	2 cut(s)	197, 306
Cfr13I	GGNCC	2 cut(s)	371, 603
Csp6I	GTAC	2 cut(s)	545, 621
CviAII	CATG	6 cut(s)	196, 215, 250, 320, 490, 625
CviQI	GTAC	2 cut(s)	545, 621
DdeI	CTNAG	7 cut(s)	26, 42, 58, 180, 210, 551, 565
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	624
Eco47I	GGWCC	1 cut(s)	603
Eco57I	CTGAAG	1 cut(s)	357
EcoO109I	RGGNCCY	2 cut(s)	371, 603
EcoRII	CCWGG	2 cut(s)	373, 417
EcoT14I	CCWWGG	1 cut(s)	624
ErhI	CCWWGG	1 cut(s)	624
FaeI	CATG	6 cut(s)	199, 218, 253, 323, 493, 628
FaiI	YATR	9 cut(s)	120, 168, 197, 216, 251, 321, 491, 518, 626
FatI	CATG	6 cut(s)	195, 214, 249, 319, 489, 624
FokI	GGATG	2 cut(s)	218, 266
FspBI	CTAG	1 cut(s)	368
HaeIII	GGCC	2 cut(s)	35, 372
Hin1II	CATG	6 cut(s)	199, 218, 253, 323, 493, 628
HindIII	AAGCTT	3 cut(s)	262, 272, 302
HinfI	GANTC	2 cut(s)	412, 422
HphI	GGTGA	4 cut(s)	73, 407, 421, 472
Hpy188I	TCNGA	4 cut(s)	45, 61, 337, 540
Hpy188III	TCNNGA	1 cut(s)	298
HpyAV	CCTTC	1 cut(s)	472
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4V	TGCA	2 cut(s)	195, 489
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 338
HpyF3I	CTNAG	7 cut(s)	26, 42, 58, 180, 210, 551, 565
Hsp92II	CATG	6 cut(s)	199, 218, 253, 323, 493, 628
LpnPI	CCDG	8 cut(s)	142, 278, 360, 375, 387, 404, 431, 626
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	368
MaeIII	GTNAC	2 cut(s)	17, 413
MboII	GAAGA	6 cut(s)	124, 233, 244, 356, 592, 595
MluCI	AATT	6 cut(s)	76, 102, 354, 508, 559, 586
MlyI	GAGTC	1 cut(s)	421
MmeI	TCCRAC	2 cut(s)	425, 493
MnlI	CCTC	8 cut(s)	25, 180, 183, 217, 369, 424, 514, 594
MseI	TTAA	5 cut(s)	48, 276, 348, 381, 474
MslI	CAYNNNNRTG	1 cut(s)	254
MspCI	CTTAAG	1 cut(s)	473
MspR9I	CCNGG	2 cut(s)	375, 419
MvaI	CCWGG	2 cut(s)	375, 419
MwoI	GCNNNNNNNGC	2 cut(s)	329, 338
NcoI	CCATGG	1 cut(s)	624
NlaIII	CATG	6 cut(s)	199, 218, 253, 323, 493, 628
NmuCI	GTSAC	2 cut(s)	17, 413
NspI	RCATGY	2 cut(s)	199, 218
PaeI	GCATGC	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	422
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
PpuMI	RGGWCCY	1 cut(s)	603
Psp5II	RGGWCCY	1 cut(s)	603
Psp6I	CCWGG	2 cut(s)	373, 417
PspGI	CCWGG	2 cut(s)	373, 417
PspPI	GGNCC	2 cut(s)	371, 603
PspPPI	RGGWCCY	1 cut(s)	603
RsaI	GTAC	2 cut(s)	546, 622
RsaNI	GTAC	2 cut(s)	545, 621
RseI	CAYNNNNRTG	1 cut(s)	254
SaqAI	TTAA	5 cut(s)	48, 276, 348, 381, 474
Sau96I	GGNCC	2 cut(s)	371, 603
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	2 cut(s)	375, 419
SfaNI	GCATC	1 cut(s)	196
SinI	GGWCC	1 cut(s)	603
SmiMI	CAYNNNNRTG	1 cut(s)	254
SmlI	CTYRAG	2 cut(s)	13, 473
SmoI	CTYRAG	2 cut(s)	13, 473
SphI	GCATGC	1 cut(s)	199
Sse9I	AATT	6 cut(s)	76, 102, 354, 508, 559, 586
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	2 cut(s)	373, 417
StyI	CCWWGG	1 cut(s)	624
TaaI	ACNGT	1 cut(s)	91
TasI	AATT	6 cut(s)	76, 102, 354, 508, 559, 586
TatI	WGTACW	1 cut(s)	544
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	5 cut(s)	48, 276, 348, 381, 474
Tru9I	TTAA	5 cut(s)	48, 276, 348, 381, 474
TscAI	CASTG	2 cut(s)	151, 559
TseFI	GTSAC	2 cut(s)	17, 413
Tsp45I	GTSAC	2 cut(s)	17, 413
TspDTI	ATGAA	1 cut(s)	459
TspGWI	ACGGA	1 cut(s)	629
TspRI	CASTG	2 cut(s)	151, 559
Vha464I	CTTAAG	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	603
XapI	RAATTY	3 cut(s)	76, 354, 508
XceI	RCATGY	2 cut(s)	199, 218
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.