Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Reverse (-)

32682615 .. 32683261

Gene Structure 647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1199000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAGCAAACTTCAGAGTGATACTCTCCGAGAGGGTGTTTCCATCATCATGAATGCGTCCAAGGAAAAAGAACGTAACTTCAGCGAGACTATTGAACTTCAGATTGGGCTGAAAAATTATGATCCCCAAAAAGACAAACGTTTCAGTTGTTCTGTTAGGTTGCCACACATCCCTTGTCCAAAGATGAAGAAGCTAAACAAGAACAAGGGGTTGGTTAAGAAGTTGGCGAAGAATGCCTTTTTGGCTTCAGAAGCCGTTATTAAGCAGATTCCCCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGAAAATTTCCAACCCTTGTTACTCACCAAGAATCCCTCGAGTCTAAGGTTTCCAAGACAAAAGCAACGATCAAGTTCCAACTGAAGAAGGTCCTTTGTATTGGAGTTGCTGTAGGGCATGTATCCAAGGAAGAGAAGCAGATCTTCCAAAACATGCAATTGAGCGTTAACTTTCTTGTTTCTCTGTTGAAGAAAAACTGGCAAAATGTAAGGTGCTTGAACCTGAAGACTACTATGGGCAAGCCATATCGCATCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

188

Amino Acids

21.21

Weight (kDa)

10.12

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	61 - 181	7.5e-27	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	139
AclWI	GGATC	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	308
AcuI	CTGAAG	5 cut(s)	64, 83, 231, 407, 548
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgsI	TTSAA	3 cut(s)	95, 493, 523
AjnI	CCWGG	1 cut(s)	286
AjuI	GAANNNNNNNTTGG	6 cut(s)	87, 119, 194, 224, 226, 256
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Alw26I	GTCTC	2 cut(s)	80, 296
AlwI	GGATC	1 cut(s)	116
Ama87I	CYCGRG	1 cut(s)	341
ApoI	RAATTY	1 cut(s)	308
AspS9I	GGNCC	2 cut(s)	284, 394
AsuHPI	GGTGA	1 cut(s)	320
AvaI	CYCGRG	1 cut(s)	341
AvaII	GGWCC	2 cut(s)	284, 394
BbsI	GAAGAC	1 cut(s)	536
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	1 cut(s)	239
BciT130I	CCWGG	1 cut(s)	288
BciVI	GTATCC	1 cut(s)	436
BcoDI	GTCTC	2 cut(s)	80, 296
BfmI	CTRYAG	1 cut(s)	414
BfuI	GTATCC	1 cut(s)	436
BglI	GCCNNNNNGGC	1 cut(s)	242
BglII	AGATCT	1 cut(s)	444
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	2 cut(s)	284, 394
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	2 cut(s)	284, 394
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	536
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	60, 429
BsaXI	ACNNNNNCTCC	2 cut(s)	399, 429
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	506
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	60, 429
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseNI	ACTGG	1 cut(s)	506
BsiHKCI	CYCGRG	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	2 cut(s)	80, 296
BsmI	GAATGC	2 cut(s)	58, 238
Bso31I	GGTCTC	1 cut(s)	296
BsoBI	CYCGRG	1 cut(s)	341
Bsp143I	GATC	3 cut(s)	121, 372, 444
BspHI	TCATGA	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	285
BspPI	GGATC	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	506
BssECI	CCNNGG	2 cut(s)	60, 429
BssMI	GATC	3 cut(s)	121, 372, 444
BssT1I	CCWWGG	2 cut(s)	60, 429
Bst2UI	CCWGG	1 cut(s)	288
Bst6I	CTCTTC	1 cut(s)	429
BstC8I	GCNNGC	1 cut(s)	545
BstDEI	CTNAG	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	168
BstKTI	GATC	3 cut(s)	124, 375, 447
BstMAI	GTCTC	2 cut(s)	80, 296
BstMBI	GATC	3 cut(s)	121, 372, 444
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 242, 251
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	2 cut(s)	425, 460
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	414
BstV2I	GAAGAC	1 cut(s)	536
BstX2I	RGATCY	1 cut(s)	444
BstYI	RGATCY	1 cut(s)	444
BsuI	GTATCC	1 cut(s)	436
BtsCI	GGATG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	545
CciI	TCATGA	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	284, 394
CseI	GACGC	1 cut(s)	45
CviAII	CATG	3 cut(s)	49, 422, 457
CviJI	RGCY	5 cut(s)	109, 193, 245, 254, 547
CviKI_1	RGCY	5 cut(s)	109, 193, 245, 254, 547
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	3 cut(s)	123, 374, 446
DpnII	GATC	3 cut(s)	121, 372, 444
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	2 cut(s)	60, 429
Eco31I	GGTCTC	1 cut(s)	296
Eco47I	GGWCC	2 cut(s)	284, 394
Eco57I	CTGAAG	5 cut(s)	64, 83, 231, 407, 548
Eco88I	CYCGRG	1 cut(s)	341
EcoO109I	RGGNCCY	2 cut(s)	284, 394
EcoRII	CCWGG	1 cut(s)	286
EcoT14I	CCWWGG	2 cut(s)	60, 429
ErhI	CCWWGG	2 cut(s)	60, 429
FaeI	CATG	3 cut(s)	52, 425, 460
FaiI	YATR	6 cut(s)	50, 120, 423, 458, 539, 550
FalI	AAGNNNNNCTT	4 cut(s)	221, 253, 431, 463
FatI	CATG	3 cut(s)	48, 421, 456
FokI	GGATG	1 cut(s)	155
HgaI	GACGC	1 cut(s)	45
Hin1II	CATG	3 cut(s)	52, 425, 460
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	3 cut(s)	268, 335, 344
HpaI	GTTAAC	1 cut(s)	472
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	4 cut(s)	15, 29, 102, 250
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	1 cut(s)	472
HpyAV	CCTTC	1 cut(s)	385
HpyCH4IV	ACGT	2 cut(s)	73, 139
HpyCH4V	TGCA	1 cut(s)	460
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 242, 251
HpyF3I	CTNAG	1 cut(s)	348
HpySE526I	ACGT	2 cut(s)	73, 139
Hsp92II	CATG	3 cut(s)	52, 425, 460
KspAI	GTTAAC	1 cut(s)	472
Kzo9I	GATC	3 cut(s)	121, 372, 444
LpnPI	CCDG	5 cut(s)	273, 288, 300, 487, 539
MaeII	ACGT	2 cut(s)	73, 139
MaeIII	GTNAC	2 cut(s)	74, 322
MalI	GATC	3 cut(s)	123, 374, 446
MboI	GATC	3 cut(s)	121, 372, 444
MboII	GAAGA	7 cut(s)	199, 241, 400, 439, 446, 505, 541
MfeI	CAATTG	1 cut(s)	461
MflI	RGATCY	1 cut(s)	444
MluCI	AATT	3 cut(s)	115, 308, 461
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	2 cut(s)	338, 406
MnlI	CCTC	2 cut(s)	25, 350
MseI	TTAA	4 cut(s)	216, 261, 471, 562
MslI	CAYNNNNRTG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	288
MunI	CAATTG	1 cut(s)	461
Mva1269I	GAATGC	2 cut(s)	58, 238
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	3 cut(s)	233, 242, 251
NdeII	GATC	3 cut(s)	121, 372, 444
NlaIII	CATG	3 cut(s)	52, 425, 460
NlaIV	GGNNCC	1 cut(s)	285
NspI	RCATGY	2 cut(s)	425, 460
PaeR7I	CTCGAG	1 cut(s)	341
PagI	TCATGA	1 cut(s)	48
PctI	GAATGC	2 cut(s)	58, 238
PfeI	GAWTC	2 cut(s)	268, 335
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PpuMI	RGGWCCY	2 cut(s)	284, 394
Psp1406I	AACGTT	1 cut(s)	139
Psp5II	RGGWCCY	2 cut(s)	284, 394
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	2 cut(s)	284, 394
PspPPI	RGGWCCY	2 cut(s)	284, 394
PspXI	VCTCGAGB	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	444
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	4 cut(s)	216, 261, 471, 562
Sau3AI	GATC	3 cut(s)	121, 372, 444
Sau96I	GGNCC	2 cut(s)	284, 394
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	1 cut(s)	288
SetI	ASST	8 cut(s)	76, 142, 161, 195, 354, 396, 518, 528
SfcI	CTRYAG	1 cut(s)	414
Sfr274I	CTCGAG	1 cut(s)	341
SinI	GGWCC	2 cut(s)	284, 394
SlaI	CTCGAG	1 cut(s)	341
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	3 cut(s)	115, 308, 461
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	2 cut(s)	60, 429
TaiI	ACGT	2 cut(s)	76, 142
TaqI	TCGA	1 cut(s)	342
TasI	AATT	3 cut(s)	115, 308, 461
TfiI	GAWTC	2 cut(s)	268, 335
Tru1I	TTAA	4 cut(s)	216, 261, 471, 562
Tru9I	TTAA	4 cut(s)	216, 261, 471, 562
TspDTI	ATGAA	2 cut(s)	65, 200
VpaK11BI	GGWCC	2 cut(s)	284, 394
XapI	RAATTY	1 cut(s)	308
XceI	RCATGY	2 cut(s)	425, 460
XhoI	CTCGAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.