Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Reverse (-)

11763217 .. 11764935

Gene Structure 1719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G27530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAGTAAGCTTCAGAGTGAGGCTGTTAGAGAAGCCATAACGACTATCAAGGGAAAATCTGAGGAGAAGAAGCGTAACTTTGTTGAGACAGTGGAGCTTCAGATTGGTCTGAAGAACTATGACCCACAAAAGGATAAGCGTTTCAGTGGATCTGTGAAGCTCCCACATATTCCTCGCCCAAAAATGAAGATCTGTATGCTTGGAGATGCTCAGCATGTTGAGGAGGCAGAGAAAATGGGACTTAGTAACATGGATGTTGAGGCTTTGAAAAAGCTTAACAAGAACAAGAAGCTTGTTAAGAAGCTTGCTAAGTCTTACCATGCTTTCTTGGCTTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGGAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCATTGGAAGCAAAGGTGAATGAGACCAAAGCAACAGTGAAGTTCCAGTTGAAGAAAGTTCTGTGTATGGGTGTTGCTGTTGGTAACCTTTCCATGGAAGAGAAGCAGCTCTTCCAGAATGTGCAGATGAGTGTTAACTTCCTCGTCTCGCTCTTGAAGAAGAATTGGCAAAACGTAAGGTGTTTGTACTTGAAGAGCACCATGGGACCACCACAAAGAATCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009791 GO:0009955 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0048731 GO:0048856 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090696 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

216

Amino Acids

24.42

Weight (kDa)

9.89

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	21 - 211	9.5e-53	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	157
AcuI	CTGAAG	2 cut(s)	83, 131
AfaI	GTAC	1 cut(s)	611
AfiI	CCNNNNNNNGG	2 cut(s)	130, 517
AgsI	TTSAA	4 cut(s)	268, 475, 580, 616
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	7 cut(s)	10, 97, 160, 274, 292, 304, 532
AluI	AGCT	7 cut(s)	10, 97, 160, 274, 292, 304, 532
Alw21I	GWGCWC	1 cut(s)	623
Alw26I	GTCTC	3 cut(s)	80, 440, 574
AlwI	GGATC	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	529
AspS9I	GGNCC	2 cut(s)	371, 629
AsuHPI	GGTGA	2 cut(s)	407, 451
AvaII	GGWCC	2 cut(s)	371, 629
BbsI	GAAGAC	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	623
BbvI	GCAGC	1 cut(s)	541
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	1 cut(s)	375
BcoDI	GTCTC	3 cut(s)	80, 440, 574
BglII	AGATCT	1 cut(s)	189
BisI	GCNGC	1 cut(s)	530
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	531
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	2 cut(s)	371, 629
BmgT120I	GGNCC	2 cut(s)	371, 629
BmiI	GGNNCC	1 cut(s)	630
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	356
Bpu1102I	GCTNAGC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	516, 624
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 517
Bse1I	ACTGG	1 cut(s)	469
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	516, 624
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	130, 517
BseMII	CTCAG	3 cut(s)	51, 224, 327
BseNI	ACTGG	1 cut(s)	469
BseRI	GAGGAG	2 cut(s)	77, 236
BseXI	GCAGC	1 cut(s)	541
BsgI	GTGCAG	1 cut(s)	566
BsiHKAI	GWGCWC	1 cut(s)	623
BslFI	GGGAC	2 cut(s)	252, 642
BslI	CCNNNNNNNGG	2 cut(s)	130, 517
BsmAI	GTCTC	3 cut(s)	80, 440, 574
BsmBI	CGTCTC	1 cut(s)	574
BsmFI	GGGAC	2 cut(s)	252, 642
Bso31I	GGTCTC	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	623
Bsp143I	GATC	2 cut(s)	149, 189
Bsp1720I	GCTNAGC	1 cut(s)	210
Bsp19I	CCATGG	2 cut(s)	516, 624
BspCNI	CTCAG	3 cut(s)	52, 223, 328
BspLI	GGNNCC	1 cut(s)	630
BspPI	GGATC	1 cut(s)	157
BspQI	GCTCTTC	2 cut(s)	539, 611
BspTNI	GGTCTC	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	2 cut(s)	516, 624
BssMI	GATC	2 cut(s)	149, 189
BssT1I	CCWWGG	2 cut(s)	516, 624
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	2 cut(s)	91, 460
Bst6I	CTCTTC	3 cut(s)	516, 539, 611
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	5 cut(s)	60, 210, 242, 309, 336
BstDSI	CCRYGG	2 cut(s)	516, 624
BstEII	GGTNACC	1 cut(s)	506
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	2 cut(s)	152, 192
BstMAI	GTCTC	3 cut(s)	80, 440, 574
BstMBI	GATC	2 cut(s)	149, 189
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	1 cut(s)	375
BstNSI	RCATGY	1 cut(s)	218
BstPI	GGTNACC	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	373
BstV1I	GCAGC	1 cut(s)	541
BstV2I	GAAGAC	1 cut(s)	356
BstX2I	RGATCY	2 cut(s)	149, 189
BstYI	RGATCY	2 cut(s)	149, 189
BtgI	CCRYGG	2 cut(s)	516, 624
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	3 cut(s)	96, 151, 465
Cac8I	GCNNGC	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	371, 629
Csp6I	GTAC	1 cut(s)	610
CviAII	CATG	5 cut(s)	215, 250, 320, 517, 625
CviQI	GTAC	1 cut(s)	610
DdeI	CTNAG	5 cut(s)	60, 210, 242, 309, 336
DpnI	GATC	2 cut(s)	151, 191
DpnII	GATC	2 cut(s)	149, 189
Eam1104I	CTCTTC	3 cut(s)	516, 539, 611
EarI	CTCTTC	3 cut(s)	516, 539, 611
Eco130I	CCWWGG	2 cut(s)	516, 624
Eco31I	GGTCTC	1 cut(s)	440
Eco47I	GGWCC	2 cut(s)	371, 629
Eco57I	CTGAAG	2 cut(s)	83, 131
Eco91I	GGTNACC	1 cut(s)	506
EcoO65I	GGTNACC	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	373
EcoT14I	CCWWGG	2 cut(s)	516, 624
ErhI	CCWWGG	2 cut(s)	516, 624
Esp3I	CGTCTC	1 cut(s)	574
FaeI	CATG	5 cut(s)	218, 253, 323, 520, 628
FalI	AAGNNNNNCTT	4 cut(s)	62, 94, 518, 550
FaqI	GGGAC	2 cut(s)	252, 642
FatI	CATG	5 cut(s)	214, 249, 319, 516, 624
Fnu4HI	GCNGC	1 cut(s)	530
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	530
GluI	GCNGC	1 cut(s)	530
Hin1II	CATG	5 cut(s)	218, 253, 323, 520, 628
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HindIII	AAGCTT	4 cut(s)	8, 272, 290, 302
HinfI	GANTC	5 cut(s)	338, 355, 412, 422, 642
HpaI	GTTAAC	1 cut(s)	559
HphI	GGTGA	2 cut(s)	407, 451
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	5 cut(s)	15, 61, 102, 111, 337
Hpy188III	TCNNGA	2 cut(s)	538, 577
Hpy8I	GTNNAC	1 cut(s)	559
HpyCH4III	ACNGT	2 cut(s)	91, 460
HpyCH4IV	ACGT	1 cut(s)	597
HpyCH4V	TGCA	1 cut(s)	547
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	5 cut(s)	60, 210, 242, 309, 336
HpySE526I	ACGT	1 cut(s)	597
Hsp92II	CATG	5 cut(s)	218, 253, 323, 520, 628
KspAI	GTTAAC	1 cut(s)	559
Kzo9I	GATC	2 cut(s)	149, 189
LguI	GCTCTTC	2 cut(s)	539, 611
LmnI	GCTCC	2 cut(s)	94, 165
LpnPI	CCDG	5 cut(s)	360, 375, 387, 482, 551
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	1 cut(s)	196
MaeII	ACGT	1 cut(s)	597
MaeIII	GTNAC	4 cut(s)	74, 245, 413, 506
MalI	GATC	2 cut(s)	151, 191
MboI	GATC	2 cut(s)	149, 189
MflI	RGATCY	2 cut(s)	149, 189
MhlI	GDGCHC	1 cut(s)	623
MluCI	AATT	1 cut(s)	586
MlyI	GAGTC	3 cut(s)	347, 421, 431
MnlI	CCTC	8 cut(s)	13, 55, 183, 214, 217, 253, 369, 575
MseI	TTAA	5 cut(s)	276, 297, 348, 381, 558
MspR9I	CCNGG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	1 cut(s)	329
NcoI	CCATGG	2 cut(s)	516, 624
NdeII	GATC	2 cut(s)	149, 189
NlaIII	CATG	5 cut(s)	218, 253, 323, 520, 628
NlaIV	GGNNCC	1 cut(s)	630
NmuCI	GTSAC	1 cut(s)	413
NspI	RCATGY	1 cut(s)	218
PciSI	GCTCTTC	2 cut(s)	539, 611
PfeI	GAWTC	2 cut(s)	355, 642
PkrI	GCNGC	1 cut(s)	531
PleI	GAGTC	3 cut(s)	346, 420, 430
PpsI	GAGTC	3 cut(s)	346, 420, 430
Psp6I	CCWGG	1 cut(s)	373
PspEI	GGTNACC	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	1 cut(s)	630
PspPI	GGNCC	2 cut(s)	371, 629
PsuI	RGATCY	2 cut(s)	149, 189
RsaI	GTAC	1 cut(s)	611
RsaNI	GTAC	1 cut(s)	610
SapI	GCTCTTC	2 cut(s)	539, 611
SaqAI	TTAA	5 cut(s)	276, 297, 348, 381, 558
SatI	GCNGC	1 cut(s)	530
Sau3AI	GATC	2 cut(s)	149, 189
Sau96I	GGNCC	2 cut(s)	371, 629
SchI	GAGTC	3 cut(s)	347, 421, 431
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	1 cut(s)	623
SfaNI	GCATC	1 cut(s)	196
SinI	GGWCC	2 cut(s)	371, 629
Sse9I	AATT	1 cut(s)	586
StyD4I	CCNGG	1 cut(s)	373
StyI	CCWWGG	2 cut(s)	516, 624
TaaI	ACNGT	2 cut(s)	91, 460
TaiI	ACGT	1 cut(s)	600
TasI	AATT	1 cut(s)	586
TatI	WGTACW	1 cut(s)	609
TfiI	GAWTC	2 cut(s)	355, 642
Tru1I	TTAA	5 cut(s)	276, 297, 348, 381, 558
Tru9I	TTAA	5 cut(s)	276, 297, 348, 381, 558
TscAI	CASTG	3 cut(s)	96, 151, 465
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	1 cut(s)	529
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	1 cut(s)	200
TspRI	CASTG	3 cut(s)	96, 151, 465
VpaK11BI	GGWCC	2 cut(s)	371, 629
XceI	RCATGY	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.