Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Reverse (-)

10906063 .. 10906350

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0133500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCGAGGTCGCGGAGCTTCTTGGAGAGGCGGAGGGTGTGGTGGAGGAGCTCGGAGGTGGCGTGGAGGTTGGAGAGCTGGATAGTGAGGGCACTAATGGAGCAGAAGAGAGCTGGGAGAGTGAGGGTGTTAATGGATCGGACGGTGGAGAGGGCGTGGTCAGCATACCGGAGGGAGGAGAGCTCGGAGAGGAGGTCGGAGTGGCAAGAGAGAACCTCGGAGAGGAGCTGGGACTCGAGGAGGCGGATGGCCCGTTGGATCTTTTCAGCGGTGGAGGCTTTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

95

Amino Acids

11.91

Weight (kDa)

11.64

Isoelectric Point (pI)

105.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	13
AciI	CCGC	4 cut(s)	13, 31, 244, 269
AclWI	GGATC	2 cut(s)	144, 266
AfiI	CCNNNNNNNGG	2 cut(s)	175, 222
AluBI	AGCT	6 cut(s)	18, 51, 78, 113, 183, 228
AluI	AGCT	6 cut(s)	18, 51, 78, 113, 183, 228
Alw21I	GWGCWC	2 cut(s)	53, 185
AlwI	GGATC	2 cut(s)	144, 266
Ama87I	CYCGRG	1 cut(s)	235
AoxI	GGCC	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	250
AvaI	CYCGRG	1 cut(s)	235
BaeGI	GKGCMC	1 cut(s)	94
BanII	GRGCYC	2 cut(s)	53, 185
Bbv12I	GWGCWC	2 cut(s)	53, 185
BccI	CCATC	1 cut(s)	241
BmeT110I	CYCGRG	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	250
BplI	GAGNNNNNCTC	4 cut(s)	167, 199, 200, 232
BsaJI	CCNNGG	1 cut(s)	216
BsaWI	WCCGGW	1 cut(s)	168
BsaXI	ACNNNNNCTCC	6 cut(s)	47, 77, 140, 170, 179, 209
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 222
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	175, 222
BseRI	GAGGAG	5 cut(s)	61, 191, 205, 238, 253
BseSI	GKGCMC	1 cut(s)	94
BseYI	CCCAGC	2 cut(s)	113, 228
Bsh1236I	CGCG	1 cut(s)	13
BshFI	GGCC	1 cut(s)	251
BsiHKAI	GWGCWC	2 cut(s)	53, 185
BsiHKCI	CYCGRG	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	2 cut(s)	175, 222
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	235
Bsp1286I	GDGCHC	3 cut(s)	53, 94, 185
Bsp143I	GATC	2 cut(s)	136, 258
BspACI	CCGC	4 cut(s)	13, 31, 244, 269
BspANI	GGCC	1 cut(s)	251
BspFNI	CGCG	1 cut(s)	13
BspPI	GGATC	2 cut(s)	144, 266
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	2 cut(s)	136, 258
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	101
BstENI	CCTNNNNNAGG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	252
BstFNI	CGCG	1 cut(s)	13
BstKTI	GATC	2 cut(s)	139, 261
BstMBI	GATC	2 cut(s)	136, 258
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 275
BstSLI	GKGCMC	1 cut(s)	94
BstUI	CGCG	1 cut(s)	13
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	250
CviJI	RGCY	8 cut(s)	18, 51, 78, 113, 183, 228, 251, 278
CviKI_1	RGCY	8 cut(s)	18, 51, 78, 113, 183, 228, 251, 278
DpnI	GATC	2 cut(s)	138, 260
DpnII	GATC	2 cut(s)	136, 258
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
EciI	GGCGGA	2 cut(s)	46, 259
Ecl136II	GAGCTC	2 cut(s)	51, 183
Eco24I	GRGCYC	2 cut(s)	53, 185
Eco53kI	GAGCTC	2 cut(s)	51, 183
Eco88I	CYCGRG	1 cut(s)	235
EcoICRI	GAGCTC	2 cut(s)	51, 183
EcoNI	CCTNNNNNAGG	1 cut(s)	220
EcoT38I	GRGCYC	2 cut(s)	53, 185
FaiI	YATR	1 cut(s)	166
FaqI	GGGAC	1 cut(s)	245
FokI	GGATG	1 cut(s)	259
FriOI	GRGCYC	2 cut(s)	53, 185
GsaI	CCCAGC	2 cut(s)	117, 232
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	1 cut(s)	169
HinfI	GANTC	1 cut(s)	233
HpaII	CCGG	1 cut(s)	169
Hpy188I	TCNGA	6 cut(s)	55, 141, 187, 199, 220, 287
HpyCH4III	ACNGT	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 275
Kzo9I	GATC	2 cut(s)	136, 258
LmnI	GCTCC	4 cut(s)	15, 48, 100, 225
LpnPI	CCDG	4 cut(s)	64, 99, 182, 214
MalI	GATC	2 cut(s)	138, 260
MboI	GATC	2 cut(s)	136, 258
MboII	GAAGA	1 cut(s)	118
MflI	RGATCY	1 cut(s)	258
MhlI	GDGCHC	3 cut(s)	53, 94, 185
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	3 cut(s)	51, 177, 236
MseI	TTAA	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	1 cut(s)	169
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	2 cut(s)	161, 275
NdeII	GATC	2 cut(s)	136, 258
PaeR7I	CTCGAG	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	1 cut(s)	59
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
Psp124BI	GAGCTC	2 cut(s)	53, 185
PspFI	CCCAGC	2 cut(s)	113, 228
PspPI	GGNCC	1 cut(s)	250
PspXI	VCTCGAGB	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	258
SacI	GAGCTC	2 cut(s)	53, 185
SaqAI	TTAA	1 cut(s)	131
Sau3AI	GATC	2 cut(s)	136, 258
Sau96I	GGNCC	1 cut(s)	250
SchI	GAGTC	1 cut(s)	227
SduI	GDGCHC	3 cut(s)	53, 94, 185
Sfr274I	CTCGAG	1 cut(s)	235
SlaI	CTCGAG	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
SsiI	CCGC	4 cut(s)	13, 31, 244, 269
SstI	GAGCTC	2 cut(s)	53, 185
TaaI	ACNGT	1 cut(s)	145
TaqI	TCGA	1 cut(s)	236
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	271
XagI	CCTNNNNNAGG	1 cut(s)	220
XhoI	CTCGAG	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.