Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Forward (+)

19359586 .. 19361752

Gene Structure 2167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG209000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGGGTTTGCATGCTTGGAGATGCTCAGCATGTTGAAGAGGCAGAGAAGATGGGATTGGCCTACATGGATGTGGAATCGCTGAAAAAGCTTAACAAGAACAAGAAGCTGGTCAAGAAGCTTGCAAAGAAGTATCATGCATTTTTGGCTTCTGAAGCTGTCATCAAGCAAATTCCTCGTCTTTTGGGCCCTGGTCTTAACAAGGCAGGTAAGTTTCCAACTCTGGTGAGTCACCAGGAATCTCTGGAGGCAAAGCTTAATGAAACAAAGGCCATGGTTAAGTTCCAACTCAAGAAGGTTCTTTGTATGGGTGTTGCCGTCGGGAATCTTGCCATGGATGAGAAACAGATATTCCAGAATGTGCAACTCAGTGTCAATTTCTTGGTTTCTCTGTTGAAGAAGAATTGGCAGAATGTGAGATCATTGAACCTGAAAAGCACCATGGGGAAAGCTATCCGAATTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

155

Amino Acids

17.46

Weight (kDa)

9.94

Isoelectric Point (pI)

27.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	1 - 149	9.3e-38	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	197
AcsI	RAATTY	2 cut(s)	171, 459
AcuI	CTGAAG	1 cut(s)	174
AgsI	TTSAA	3 cut(s)	38, 397, 427
AjnI	CCWGG	2 cut(s)	190, 234
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AluBI	AGCT	6 cut(s)	91, 109, 121, 158, 256, 452
AluI	AGCT	6 cut(s)	91, 109, 121, 158, 256, 452
AoxI	GGCC	3 cut(s)	60, 187, 270
ApaI	GGGCCC	1 cut(s)	191
ApoI	RAATTY	2 cut(s)	171, 459
ArsI	GACNNNNNNTTYG	2 cut(s)	163, 195
AspS9I	GGNCC	2 cut(s)	187, 188
AsuHPI	GGTGA	2 cut(s)	224, 238
BaeGI	GKGCMC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	191
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	302
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BciT130I	CCWGG	2 cut(s)	192, 236
BfuAI	ACCTGC	1 cut(s)	197
BlpI	GCTNAGC	1 cut(s)	27
Bme1390I	CCNGG	2 cut(s)	192, 236
BmgT120I	GGNCC	2 cut(s)	187, 188
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	2 cut(s)	192, 236
BmsI	GCATC	1 cut(s)	13
BpmI	CTGGAG	1 cut(s)	266
Bpu1102I	GCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	275
BsaJI	CCNNGG	4 cut(s)	190, 273, 333, 441
BseBI	CCWGG	2 cut(s)	192, 236
BseDI	CCNNGG	4 cut(s)	190, 273, 333, 441
BseGI	GGATG	2 cut(s)	76, 343
BseMII	CTCAG	2 cut(s)	41, 382
BseSI	GKGCMC	1 cut(s)	191
BshFI	GGCC	3 cut(s)	62, 189, 272
BsnI	GGCC	3 cut(s)	62, 189, 272
Bsp120I	GGGCCC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	419
Bsp1720I	GCTNAGC	1 cut(s)	27
Bsp19I	CCATGG	3 cut(s)	273, 333, 441
BspANI	GGCC	3 cut(s)	62, 189, 272
BspCNI	CTCAG	2 cut(s)	40, 381
BspLI	GGNNCC	1 cut(s)	189
BspMI	ACCTGC	1 cut(s)	197
BssECI	CCNNGG	4 cut(s)	190, 273, 333, 441
BssMI	GATC	1 cut(s)	419
BssT1I	CCWWGG	3 cut(s)	273, 333, 441
Bst2UI	CCWGG	2 cut(s)	192, 236
Bst6I	CTCTTC	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	14, 123
BstDEI	CTNAG	2 cut(s)	27, 368
BstDSI	CCRYGG	3 cut(s)	273, 333, 441
BstF5I	GGATG	2 cut(s)	76, 343
BstKTI	GATC	1 cut(s)	422
BstMBI	GATC	1 cut(s)	419
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 146, 155
BstNI	CCWGG	2 cut(s)	192, 236
BstNSI	RCATGY	2 cut(s)	16, 35
BstSCI	CCNGG	2 cut(s)	190, 234
BstSLI	GKGCMC	1 cut(s)	191
BsuRI	GGCC	3 cut(s)	62, 189, 272
BtgI	CCRYGG	3 cut(s)	273, 333, 441
BtsCI	GGATG	2 cut(s)	76, 343
BtsIMutI	CAGTG	1 cut(s)	376
BveI	ACCTGC	1 cut(s)	197
Cac8I	GCNNGC	2 cut(s)	14, 123
Cfr13I	GGNCC	2 cut(s)	187, 188
CviAII	CATG	7 cut(s)	13, 32, 67, 137, 274, 334, 442
DdeI	CTNAG	2 cut(s)	27, 368
DpnI	GATC	1 cut(s)	421
DpnII	GATC	1 cut(s)	419
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco130I	CCWWGG	3 cut(s)	273, 333, 441
Eco24I	GRGCYC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	190, 234
EcoT14I	CCWWGG	3 cut(s)	273, 333, 441
EcoT22I	ATGCAT	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	3 cut(s)	273, 333, 441
FaeI	CATG	7 cut(s)	16, 35, 70, 140, 277, 337, 445
FaiI	YATR	8 cut(s)	14, 33, 68, 138, 275, 308, 335, 443
FatI	CATG	7 cut(s)	12, 31, 66, 136, 273, 333, 441
FokI	GGATG	2 cut(s)	83, 350
FriOI	GRGCYC	1 cut(s)	191
GsuI	CTGGAG	1 cut(s)	266
HaeIII	GGCC	3 cut(s)	62, 189, 272
Hin1II	CATG	7 cut(s)	16, 35, 70, 140, 277, 337, 445
HindIII	AAGCTT	3 cut(s)	89, 119, 254
HinfI	GANTC	4 cut(s)	77, 229, 239, 325
HphI	GGTGA	2 cut(s)	224, 238
Hpy188I	TCNGA	2 cut(s)	154, 458
Hpy188III	TCNNGA	5 cut(s)	115, 245, 292, 322, 355
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	1 cut(s)	289
HpyCH4V	TGCA	4 cut(s)	12, 125, 140, 364
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 146, 155
HpyF3I	CTNAG	2 cut(s)	27, 368
Hsp92II	CATG	7 cut(s)	16, 35, 70, 140, 277, 337, 445
Kzo9I	GATC	1 cut(s)	419
LweI	GCATC	1 cut(s)	13
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	1 cut(s)	421
MboI	GATC	1 cut(s)	419
MboII	GAAGA	4 cut(s)	50, 61, 409, 412
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	4 cut(s)	171, 376, 403, 459
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	2 cut(s)	242, 310
MnlI	CCTC	3 cut(s)	34, 186, 241
Mph1103I	ATGCAT	1 cut(s)	142
MseI	TTAA	4 cut(s)	93, 198, 258, 279
MslI	CAYNNNNRTG	1 cut(s)	71
MspR9I	CCNGG	2 cut(s)	192, 236
MvaI	CCWGG	2 cut(s)	192, 236
MwoI	GCNNNNNNNGC	3 cut(s)	88, 146, 155
NcoI	CCATGG	3 cut(s)	273, 333, 441
NdeII	GATC	1 cut(s)	419
NlaIII	CATG	7 cut(s)	16, 35, 70, 140, 277, 337, 445
NlaIV	GGNNCC	1 cut(s)	189
NmuCI	GTSAC	1 cut(s)	230
NsiI	ATGCAT	1 cut(s)	142
NspI	RCATGY	2 cut(s)	16, 35
PaeI	GCATGC	1 cut(s)	16
PfeI	GAWTC	3 cut(s)	77, 239, 325
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	190, 234
PspGI	CCWGG	2 cut(s)	190, 234
PspN4I	GGNNCC	1 cut(s)	189
PspOMI	GGGCCC	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	187, 188
RseI	CAYNNNNRTG	1 cut(s)	71
SaqAI	TTAA	4 cut(s)	93, 198, 258, 279
Sau3AI	GATC	1 cut(s)	419
Sau96I	GGNCC	2 cut(s)	187, 188
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	2 cut(s)	192, 236
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	9 cut(s)	93, 111, 123, 160, 211, 258, 300, 432, 454
SfaNI	GCATC	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SphI	GCATGC	1 cut(s)	16
Sse9I	AATT	4 cut(s)	171, 376, 403, 459
StyD4I	CCNGG	2 cut(s)	190, 234
StyI	CCWWGG	3 cut(s)	273, 333, 441
TasI	AATT	4 cut(s)	171, 376, 403, 459
TfiI	GAWTC	3 cut(s)	77, 239, 325
Tru1I	TTAA	4 cut(s)	93, 198, 258, 279
Tru9I	TTAA	4 cut(s)	93, 198, 258, 279
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	276
TspRI	CASTG	1 cut(s)	376
XapI	RAATTY	2 cut(s)	171, 459
XceI	RCATGY	2 cut(s)	16, 35
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.