Rh5CG333500

Belongs to the universal ribosomal protein uL1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001903
Physical Location & Seq
Forward (+)
37679235 .. 37680053
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG333500.1

Sequence Viewer

Length: 330 bp
ATGAGTAAGCTTCAAAGTGATTCTCTTAGGGAGGCTATTTCTATCATCAAGGCCGCTTCCAAGGAAAAGAGTCGTAAGTTAACAGAAACTACAGAACTTCAGATTGGGCTGAAAAATTATGATCCCCAAAAGGACAAGCGTTACAGTGGTTCCGTTAAGTTACCACACATTCCTCGTCCAAAGATGAAGTTCTGCATGCTTGGAGATGCTCAGCATGTTGAAGAGGCTCAGAAGATCGGTTTGGGGTTCATGGATGTAGAAGCGCTGAAGAAGTTAAACAAGAACAAGAAATTGGTTAAGAAACTGGCTAAAAGTACCATGCCTCTTTAG

Protein Analysis

109

Amino Acids

12.33

Weight (kDa)

9.93

Isoelectric Point (pI)

53.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L1 PF00687 21 - 105 1.5e-14 Ribosomal protein L1p/L10e family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 54
AclWI GGATC 1 cut(s) 116
AcuI CTGAAG 2 cut(s) 83, 287
AfaI GTAC 1 cut(s) 316
AfeI AGCGCT 1 cut(s) 264
AgsI TTSAA 2 cut(s) 14, 221
AjuI GAANNNNNNNTTGG 6 cut(s) 87, 119, 224, 256, 275, 307
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
AlwI GGATC 1 cut(s) 116
Aor51HI AGCGCT 1 cut(s) 264
AoxI GGCC 1 cut(s) 51
AspLEI GCGC 1 cut(s) 265
BfmI CTRYAG 1 cut(s) 90
BfoI RGCGCY 1 cut(s) 266
BisI GCNGC 1 cut(s) 54
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 151
BmsI GCATC 1 cut(s) 196
Bpu1102I GCTNAGC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 259
BseMII CTCAG 2 cut(s) 224, 242
BseNI ACTGG 1 cut(s) 309
BshFI GGCC 1 cut(s) 53
BsnI GGCC 1 cut(s) 53
Bsp143I GATC 2 cut(s) 121, 234
Bsp1720I GCTNAGC 1 cut(s) 210
BspACI CCGC 1 cut(s) 54
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 2 cut(s) 223, 241
BspLI GGNNCC 1 cut(s) 151
BspPI GGATC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 309
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 2 cut(s) 121, 234
BssT1I CCWWGG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 197
BstDEI CTNAG 3 cut(s) 26, 210, 228
BstF5I GGATG 1 cut(s) 259
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 2 cut(s) 124, 237
BstMBI GATC 2 cut(s) 121, 234
BstNSI RCATGY 2 cut(s) 199, 218
BstSFI CTRYAG 1 cut(s) 90
BsuRI GGCC 1 cut(s) 53
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 197
CfoI GCGC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 315
CviAII CATG 4 cut(s) 196, 215, 250, 319
CviJI RGCY 6 cut(s) 10, 35, 53, 109, 227, 308
CviKI_1 RGCY 6 cut(s) 10, 35, 53, 109, 227, 308
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 3 cut(s) 26, 210, 228
DpnI GATC 2 cut(s) 123, 236
DpnII GATC 2 cut(s) 121, 234
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 60
Eco47III AGCGCT 1 cut(s) 264
Eco57I CTGAAG 2 cut(s) 83, 287
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 4 cut(s) 199, 218, 253, 322
FaiI YATR 5 cut(s) 120, 197, 216, 251, 320
FatI CATG 4 cut(s) 195, 214, 249, 318
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 1 cut(s) 54
GlaI GCGC 1 cut(s) 264
GluI GCNGC 1 cut(s) 54
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 1 cut(s) 53
HhaI GCGC 1 cut(s) 265
Hin1II CATG 4 cut(s) 199, 218, 253, 322
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 2 cut(s) 20, 70
HpaI GTTAAC 1 cut(s) 81
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 2 cut(s) 102, 231
Hpy8I GTNNAC 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4V TGCA 1 cut(s) 195
HpyF3I CTNAG 3 cut(s) 26, 210, 228
Hsp92II CATG 4 cut(s) 199, 218, 253, 322
HspAI GCGC 1 cut(s) 263
KspAI GTTAAC 1 cut(s) 81
Kzo9I GATC 2 cut(s) 121, 234
LpnPI CCDG 1 cut(s) 290
LweI GCATC 1 cut(s) 196
MaeIII GTNAC 2 cut(s) 140, 159
MalI GATC 2 cut(s) 123, 236
MboI GATC 2 cut(s) 121, 234
MboII GAAGA 3 cut(s) 233, 244, 280
MluCI AATT 2 cut(s) 115, 290
MlyI GAGTC 1 cut(s) 79
MnlI CCTC 3 cut(s) 25, 183, 217
MseI TTAA 4 cut(s) 80, 156, 275, 297
NdeII GATC 2 cut(s) 121, 234
NlaIII CATG 4 cut(s) 199, 218, 253, 322
NlaIV GGNNCC 1 cut(s) 151
NspI RCATGY 2 cut(s) 199, 218
PaeI GCATGC 1 cut(s) 199
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 151
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
SaqAI TTAA 4 cut(s) 80, 156, 275, 297
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 2 cut(s) 121, 234
SchI GAGTC 1 cut(s) 79
SetI ASST 1 cut(s) 12
SfaNI GCATC 1 cut(s) 196
SfcI CTRYAG 1 cut(s) 90
SphI GCATGC 1 cut(s) 199
Sse9I AATT 2 cut(s) 115, 290
SsiI CCGC 1 cut(s) 54
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 146
TasI AATT 2 cut(s) 115, 290
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 4 cut(s) 80, 156, 275, 297
Tru9I TTAA 4 cut(s) 80, 156, 275, 297
TscAI CASTG 1 cut(s) 151
TspDTI ATGAA 2 cut(s) 200, 238
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 1 cut(s) 151
XceI RCATGY 2 cut(s) 199, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.