Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Forward (+)

10064456 .. 10067410

Gene Structure 2955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G129700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAGTAAACTTCAGAGTGATACTCTCAGAGAGGGTATTTCCACCATCATGGCTGCGTCCAAGGAAAAAAACCGCAAGTTCACTGAGACCATCGAACTTCAGATTGGGCTGAAAAATTATGATCCCCAAAAAGACAAACGTTTCAGTGGTTCTGTTAGGTTGCCACACATCCCTCGTCCAAAGATGAAGGTTTGCATGCTTGGAGATGCTCAGCATGTTGAAGAGGCTGAGAAGATAGGGTTGGATTATATGGATGTTGAAGGGCTGAAGAAGCTAAACAAGAACAAGAAATTGGTTAAGAAACTGGCCAAGAAATACCATGCCTTTTTGGCATCAGAAGCTGTTATTAAGCAGATTCCCCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGAAAATTTCCAACCCTGGTTACTCACCAAGAATCTCTCGAGTCTAAGGTTGCTGAGACAAAAGCAACCATTAAGTTCCAACTGAAGAAGGTTCTTTGCATGGGAGTTGCTGTGGGGAATGCCTCCATGGAGGAGAAACAGATCTTCCAAAATGTGCAATTGAGTGTTAACTTCCTTGTTTCACTTTTGAAGAAAAATTGGCAAAATGTGAAGTGCTTGAACCTGAAGACTACTATGGGGAAGCCATATCGCATCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

217

Amino Acids

24.45

Weight (kDa)

9.88

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	73
AclI	AACGTT	1 cut(s)	139
AclWI	GGATC	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	4 cut(s)	83, 287, 494, 635
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgsI	TTSAA	4 cut(s)	221, 260, 580, 610
AjnI	CCWGG	2 cut(s)	373, 405
AjuI	GAANNNNNNNTTGG	6 cut(s)	87, 119, 224, 256, 275, 307
AluBI	AGCT	2 cut(s)	274, 341
AluI	AGCT	2 cut(s)	274, 341
Alw26I	GTCTC	3 cut(s)	80, 383, 440
AlwI	GGATC	1 cut(s)	116
AlwNI	CAGNNNCTG	1 cut(s)	341
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	395
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	407
AvaI	CYCGRG	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	371
BalI	TGGCCA	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	623
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	2 cut(s)	53, 98
BciT130I	CCWGG	2 cut(s)	375, 407
BcoDI	GTCTC	3 cut(s)	80, 383, 440
BglI	GCCNNNNNGGC	1 cut(s)	329
BglII	AGATCT	1 cut(s)	531
BisI	GCNGC	1 cut(s)	54
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	2 cut(s)	375, 407
Bme18I	GGWCC	1 cut(s)	371
BmeT110I	CYCGRG	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	372
BmrFI	CCNGG	2 cut(s)	375, 407
BmsI	GCATC	2 cut(s)	196, 341
BpiI	GAAGAC	1 cut(s)	623
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
Bpu1102I	GCTNAGC	1 cut(s)	210
BsaI	GGTCTC	2 cut(s)	80, 383
BsaJI	CCNNGG	3 cut(s)	60, 405, 516
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse1I	ACTGG	1 cut(s)	309
BseBI	CCWGG	2 cut(s)	375, 407
BseDI	CCNNGG	3 cut(s)	60, 405, 516
BseGI	GGATG	2 cut(s)	168, 259
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMII	CTCAG	5 cut(s)	40, 75, 219, 224, 435
BseNI	ACTGG	1 cut(s)	309
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	1 cut(s)	40
BshFI	GGCC	1 cut(s)	308
BsiHKCI	CYCGRG	1 cut(s)	428
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	3 cut(s)	80, 383, 440
BsmI	GAATGC	1 cut(s)	514
BsnI	GGCC	1 cut(s)	308
Bso31I	GGTCTC	2 cut(s)	80, 383
BsoBI	CYCGRG	1 cut(s)	428
Bsp143I	GATC	2 cut(s)	121, 531
Bsp1720I	GCTNAGC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	516
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	5 cut(s)	39, 76, 220, 223, 436
BspLI	GGNNCC	1 cut(s)	372
BspPI	GGATC	1 cut(s)	116
BspTNI	GGTCTC	2 cut(s)	80, 383
BsrI	ACTGG	1 cut(s)	309
BssECI	CCNNGG	3 cut(s)	60, 405, 516
BssMI	GATC	2 cut(s)	121, 531
BssT1I	CCWWGG	2 cut(s)	60, 516
Bst2UI	CCWGG	2 cut(s)	375, 407
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	6 cut(s)	26, 84, 210, 228, 435, 444
BstDSI	CCRYGG	1 cut(s)	516
BstF5I	GGATG	2 cut(s)	168, 259
BstKTI	GATC	2 cut(s)	124, 534
BstMAI	GTCTC	3 cut(s)	80, 383, 440
BstMBI	GATC	2 cut(s)	121, 531
BstMWI	GCNNNNNNNGC	3 cut(s)	271, 329, 338
BstNI	CCWGG	2 cut(s)	375, 407
BstNSI	RCATGY	2 cut(s)	199, 218
BstSCI	CCNGG	2 cut(s)	373, 405
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	1 cut(s)	623
BstX2I	RGATCY	1 cut(s)	531
BstXI	CCANNNNNNTGG	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	531
BsuRI	GGCC	1 cut(s)	308
BtgI	CCRYGG	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	168, 259
BtsIMutI	CAGTG	2 cut(s)	81, 151
Cac8I	GCNNGC	1 cut(s)	197
CaiI	CAGNNNCTG	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	371
CseI	GACGC	1 cut(s)	45
CviAII	CATG	6 cut(s)	49, 196, 215, 320, 490, 517
CviJI	RGCY	8 cut(s)	53, 109, 227, 265, 274, 308, 341, 634
CviKI_1	RGCY	8 cut(s)	53, 109, 227, 265, 274, 308, 341, 634
DdeI	CTNAG	6 cut(s)	26, 84, 210, 228, 435, 444
DpnI	GATC	2 cut(s)	123, 533
DpnII	GATC	2 cut(s)	121, 531
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	2 cut(s)	60, 516
Eco31I	GGTCTC	2 cut(s)	80, 383
Eco47I	GGWCC	1 cut(s)	371
Eco57I	CTGAAG	4 cut(s)	83, 287, 494, 635
Eco88I	CYCGRG	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	373, 405
EcoT14I	CCWWGG	2 cut(s)	60, 516
ErhI	CCWWGG	2 cut(s)	60, 516
FaeI	CATG	6 cut(s)	52, 199, 218, 323, 493, 520
FatI	CATG	6 cut(s)	48, 195, 214, 319, 489, 516
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	2 cut(s)	155, 266
Fsp4HI	GCNGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	308
HgaI	GACGC	1 cut(s)	45
Hin1II	CATG	6 cut(s)	52, 199, 218, 323, 493, 520
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HinfI	GANTC	3 cut(s)	355, 422, 431
HpaI	GTTAAC	1 cut(s)	559
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	3 cut(s)	8, 81, 559
Hpy188I	TCNGA	4 cut(s)	15, 29, 102, 337
Hpy188III	TCNNGA	1 cut(s)	428
Hpy8I	GTNNAC	3 cut(s)	8, 81, 559
HpyAV	CCTTC	3 cut(s)	181, 254, 472
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	3 cut(s)	195, 489, 547
HpyF10VI	GCNNNNNNNGC	3 cut(s)	271, 329, 338
HpyF3I	CTNAG	6 cut(s)	26, 84, 210, 228, 435, 444
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	6 cut(s)	52, 199, 218, 323, 493, 520
KspAI	GTTAAC	1 cut(s)	559
Kzo9I	GATC	2 cut(s)	121, 531
LpnPI	CCDG	7 cut(s)	290, 360, 375, 387, 392, 419, 626
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	2 cut(s)	196, 341
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	2 cut(s)	123, 533
MboI	GATC	2 cut(s)	121, 531
MboII	GAAGA	7 cut(s)	233, 244, 280, 487, 526, 592, 628
MfeI	CAATTG	1 cut(s)	548
MflI	RGATCY	1 cut(s)	531
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	5 cut(s)	115, 290, 395, 548, 586
MluNI	TGGCCA	1 cut(s)	308
MlyI	GAGTC	1 cut(s)	440
MmeI	TCCRAC	3 cut(s)	222, 425, 493
MnlI	CCTC	5 cut(s)	25, 183, 217, 514, 523
Mox20I	TGGCCA	1 cut(s)	308
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	5 cut(s)	297, 348, 462, 558, 649
MslI	CAYNNNNRTG	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	308
MspR9I	CCNGG	2 cut(s)	375, 407
MunI	CAATTG	1 cut(s)	548
Mva1269I	GAATGC	1 cut(s)	514
MvaI	CCWGG	2 cut(s)	375, 407
MwoI	GCNNNNNNNGC	3 cut(s)	271, 329, 338
NcoI	CCATGG	1 cut(s)	516
NdeII	GATC	2 cut(s)	121, 531
NlaIII	CATG	6 cut(s)	52, 199, 218, 323, 493, 520
NlaIV	GGNNCC	1 cut(s)	372
NspI	RCATGY	2 cut(s)	199, 218
PaeI	GCATGC	1 cut(s)	199
PaeR7I	CTCGAG	1 cut(s)	428
PctI	GAATGC	1 cut(s)	514
PfeI	GAWTC	2 cut(s)	355, 422
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PpuMI	RGGWCCY	1 cut(s)	371
Psp1406I	AACGTT	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	371
Psp6I	CCWGG	2 cut(s)	373, 405
PspGI	CCWGG	2 cut(s)	373, 405
PspN4I	GGNNCC	1 cut(s)	372
PspPI	GGNCC	1 cut(s)	371
PspPPI	RGGWCCY	1 cut(s)	371
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	531
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	5 cut(s)	297, 348, 462, 558, 649
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	2 cut(s)	121, 531
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	2 cut(s)	375, 407
SetI	ASST	8 cut(s)	142, 161, 192, 276, 343, 441, 483, 615
SfaNI	GCATC	2 cut(s)	196, 341
Sfr274I	CTCGAG	1 cut(s)	428
SinI	GGWCC	1 cut(s)	371
SlaI	CTCGAG	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SphI	GCATGC	1 cut(s)	199
Sse9I	AATT	5 cut(s)	115, 290, 395, 548, 586
SsiI	CCGC	1 cut(s)	73
StyD4I	CCNGG	2 cut(s)	373, 405
StyI	CCWWGG	2 cut(s)	60, 516
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	2 cut(s)	93, 429
TasI	AATT	5 cut(s)	115, 290, 395, 548, 586
TfiI	GAWTC	2 cut(s)	355, 422
Tru1I	TTAA	5 cut(s)	297, 348, 462, 558, 649
Tru9I	TTAA	5 cut(s)	297, 348, 462, 558, 649
TscAI	CASTG	2 cut(s)	88, 151
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	200
TspRI	CASTG	2 cut(s)	88, 151
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	1 cut(s)	395
XceI	RCATGY	2 cut(s)	199, 218
XhoI	CTCGAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.