Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Forward (+)

12328591 .. 12330962

Gene Structure 2372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAGTAAGCTTCAAAGTGAGGCATTGAGGGAGGCCATCTCCCAGATCAAGACTAATGCGGAGACCAAGAAGAGGAAGTTCACTGAGACTGTGGAGTTGCAGATTGGTCTGAAGAACTATGACCCACAAAAGGACAAGCGTTTCAGCGGTTCCGTCAGGCTTCCCCACATTCCTCGCCCCAAGATGAGGGTTTGTATGCTTGGAGATGCCCAGCATGTCGAAGAGGCTGAGAAGATGGGATTGGCCTACATGGATGTGGAATCCCTGAAGAAGCTTAACAAGAACAAGAAGCTTGTCAAGAAGCTTGCAAAGAAGTATCATGCTTTTTTGGCTTCTGAGGCTGTCATCAAGCAAATTCCTCGTCTTTTGGGCCCTGGACTCAACAAGGCAGGTAAGTTCCCAACTCTTGTGAGTCACCAGGAATCTCTGGAGGCAAAGCTTAATGAAACCAAGGCCATGGTGAAGTTCCAACTCAAGAAGGTTCTTTGTATGGGTGTTGCTGTCGGGAATCTTGCCATGGAGGAGAAGCAGATATTCCAGAATGTGCAACTCAGTGTCAATTTCTTGGTTTCTCTATTGAAGAAGAATTGGCAGAATGTGAGGTCGTTGAACCTGAAGAGCACCATGGGCAAAGCAATTCGAATCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

217

Amino Acids

24.52

Weight (kDa)

10.05

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	21 - 210	2.9e-51	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	380
AciI	CCGC	2 cut(s)	59, 147
AcsI	RAATTY	1 cut(s)	354
AcuI	CTGAAG	3 cut(s)	131, 287, 635
AfiI	CCNNNNNNNGG	3 cut(s)	72, 130, 186
AgsI	TTSAA	3 cut(s)	14, 580, 610
AjnI	CCWGG	2 cut(s)	373, 417
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	5 cut(s)	10, 274, 292, 304, 439
AluI	AGCT	5 cut(s)	10, 274, 292, 304, 439
Alw21I	GWGCWC	1 cut(s)	623
Alw26I	GTCTC	2 cut(s)	56, 80
AoxI	GGCC	4 cut(s)	33, 243, 370, 453
ApaI	GGGCCC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	354
ArsI	GACNNNNNNTTYG	2 cut(s)	346, 378
AspS9I	GGNCC	2 cut(s)	370, 371
AsuHPI	GGTGA	2 cut(s)	407, 472
AsuII	TTCGAA	1 cut(s)	640
BaeGI	GKGCMC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	623
BccI	CCATC	2 cut(s)	44, 229
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	2 cut(s)	375, 419
BcoDI	GTCTC	2 cut(s)	56, 80
BfuAI	ACCTGC	1 cut(s)	380
Bme1390I	CCNGG	2 cut(s)	375, 419
BmgT120I	GGNCC	2 cut(s)	370, 371
BmiI	GGNNCC	2 cut(s)	151, 372
BmrFI	CCNGG	2 cut(s)	375, 419
BmsI	GCATC	1 cut(s)	196
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
BpmI	CTGGAG	1 cut(s)	449
Bpu14I	TTCGAA	1 cut(s)	640
BpuEI	CTTGAG	1 cut(s)	458
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	5 cut(s)	373, 450, 456, 516, 624
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 130, 186
BseBI	CCWGG	2 cut(s)	375, 419
BseDI	CCNNGG	5 cut(s)	373, 450, 456, 516, 624
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	3 cut(s)	72, 130, 186
BseMII	CTCAG	4 cut(s)	75, 219, 327, 565
BseRI	GAGGAG	1 cut(s)	536
BseSI	GKGCMC	1 cut(s)	374
BseYI	CCCAGC	1 cut(s)	210
BshFI	GGCC	4 cut(s)	35, 245, 372, 455
BsiHKAI	GWGCWC	1 cut(s)	623
BslI	CCNNNNNNNGG	3 cut(s)	72, 130, 186
BsmAI	GTCTC	2 cut(s)	56, 80
BsnI	GGCC	4 cut(s)	35, 245, 372, 455
Bso31I	GGTCTC	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	640
Bsp120I	GGGCCC	1 cut(s)	370
Bsp1286I	GDGCHC	2 cut(s)	374, 623
Bsp143I	GATC	1 cut(s)	45
Bsp19I	CCATGG	3 cut(s)	456, 516, 624
BspACI	CCGC	2 cut(s)	59, 147
BspANI	GGCC	4 cut(s)	35, 245, 372, 455
BspCNI	CTCAG	4 cut(s)	76, 220, 328, 564
BspLI	GGNNCC	2 cut(s)	151, 372
BspMI	ACCTGC	1 cut(s)	380
BspQI	GCTCTTC	1 cut(s)	611
BspT104I	TTCGAA	1 cut(s)	640
BspTNI	GGTCTC	1 cut(s)	56
BssECI	CCNNGG	5 cut(s)	373, 450, 456, 516, 624
BssMI	GATC	1 cut(s)	45
BssT1I	CCWWGG	4 cut(s)	450, 456, 516, 624
Bst2UI	CCWGG	2 cut(s)	375, 419
Bst4CI	ACNGT	1 cut(s)	91
Bst6I	CTCTTC	3 cut(s)	65, 216, 611
BstBI	TTCGAA	1 cut(s)	640
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	4 cut(s)	84, 228, 336, 551
BstDSI	CCRYGG	3 cut(s)	456, 516, 624
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	2 cut(s)	56, 80
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 338, 627
BstNI	CCWGG	2 cut(s)	375, 419
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	2 cut(s)	373, 417
BstSLI	GKGCMC	1 cut(s)	374
BstXI	CCANNNNNNTGG	1 cut(s)	457
BsuRI	GGCC	4 cut(s)	35, 245, 372, 455
BtgI	CCRYGG	3 cut(s)	456, 516, 624
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	2 cut(s)	81, 559
BveI	ACCTGC	1 cut(s)	380
Cac8I	GCNNGC	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	370, 371
CviAII	CATG	6 cut(s)	215, 250, 320, 457, 517, 625
DdeI	CTNAG	4 cut(s)	84, 228, 336, 551
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
Eam1104I	CTCTTC	3 cut(s)	65, 216, 611
EarI	CTCTTC	3 cut(s)	65, 216, 611
Eco130I	CCWWGG	4 cut(s)	450, 456, 516, 624
Eco24I	GRGCYC	1 cut(s)	374
Eco31I	GGTCTC	1 cut(s)	56
Eco57I	CTGAAG	3 cut(s)	131, 287, 635
EcoO109I	RGGNCCY	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	373, 417
EcoT14I	CCWWGG	4 cut(s)	450, 456, 516, 624
EcoT38I	GRGCYC	1 cut(s)	374
ErhI	CCWWGG	4 cut(s)	450, 456, 516, 624
FaeI	CATG	6 cut(s)	218, 253, 323, 460, 520, 628
FaiI	YATR	9 cut(s)	120, 197, 216, 251, 321, 458, 491, 518, 626
FatI	CATG	6 cut(s)	214, 249, 319, 456, 516, 624
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	374
GsaI	CCCAGC	1 cut(s)	214
GsuI	CTGGAG	1 cut(s)	449
HaeIII	GGCC	4 cut(s)	35, 245, 372, 455
Hin1II	CATG	6 cut(s)	218, 253, 323, 460, 520, 628
HindIII	AAGCTT	5 cut(s)	8, 272, 290, 302, 437
HinfI	GANTC	6 cut(s)	260, 378, 412, 422, 508, 642
HphI	GGTGA	2 cut(s)	407, 472
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	2 cut(s)	111, 337
Hpy188III	TCNNGA	6 cut(s)	49, 298, 428, 475, 505, 538
Hpy8I	GTNNAC	1 cut(s)	81
HpyAV	CCTTC	1 cut(s)	472
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4V	TGCA	3 cut(s)	100, 308, 547
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 338, 627
HpyF3I	CTNAG	4 cut(s)	84, 228, 336, 551
Hsp92II	CATG	6 cut(s)	218, 253, 323, 460, 520, 628
Kzo9I	GATC	1 cut(s)	45
LguI	GCTCTTC	1 cut(s)	611
LweI	GCATC	1 cut(s)	196
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	8 cut(s)	82, 124, 233, 244, 280, 592, 595, 628
MhlI	GDGCHC	2 cut(s)	374, 623
MluCI	AATT	4 cut(s)	354, 559, 586, 636
MlyI	GAGTC	2 cut(s)	372, 421
MmeI	TCCRAC	1 cut(s)	493
MseI	TTAA	2 cut(s)	276, 441
MslI	CAYNNNNRTG	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	147
MspR9I	CCNGG	2 cut(s)	375, 419
MvaI	CCWGG	2 cut(s)	375, 419
MwoI	GCNNNNNNNGC	3 cut(s)	329, 338, 627
NcoI	CCATGG	3 cut(s)	456, 516, 624
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	6 cut(s)	218, 253, 323, 460, 520, 628
NlaIV	GGNNCC	2 cut(s)	151, 372
NmuCI	GTSAC	1 cut(s)	413
NspI	RCATGY	1 cut(s)	218
NspV	TTCGAA	1 cut(s)	640
PciSI	GCTCTTC	1 cut(s)	611
PfeI	GAWTC	4 cut(s)	260, 422, 508, 642
PleI	GAGTC	2 cut(s)	372, 420
PpsI	GAGTC	2 cut(s)	372, 420
Psp6I	CCWGG	2 cut(s)	373, 417
PspFI	CCCAGC	1 cut(s)	210
PspGI	CCWGG	2 cut(s)	373, 417
PspN4I	GGNNCC	2 cut(s)	151, 372
PspOMI	GGGCCC	1 cut(s)	370
PspPI	GGNCC	2 cut(s)	370, 371
RseI	CAYNNNNRTG	1 cut(s)	254
SapI	GCTCTTC	1 cut(s)	611
SaqAI	TTAA	2 cut(s)	276, 441
Sau3AI	GATC	1 cut(s)	45
Sau96I	GGNCC	2 cut(s)	370, 371
SchI	GAGTC	2 cut(s)	372, 421
ScrFI	CCNGG	2 cut(s)	375, 419
SduI	GDGCHC	2 cut(s)	374, 623
SetI	ASST	9 cut(s)	12, 276, 294, 306, 394, 441, 483, 605, 615
SfaNI	GCATC	1 cut(s)	196
SfuI	TTCGAA	1 cut(s)	640
SmiMI	CAYNNNNRTG	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	4 cut(s)	354, 559, 586, 636
SsiI	CCGC	2 cut(s)	59, 147
StyD4I	CCNGG	2 cut(s)	373, 417
StyI	CCWWGG	4 cut(s)	450, 456, 516, 624
TaaI	ACNGT	1 cut(s)	91
TaqI	TCGA	2 cut(s)	219, 640
TasI	AATT	4 cut(s)	354, 559, 586, 636
TfiI	GAWTC	4 cut(s)	260, 422, 508, 642
Tru1I	TTAA	2 cut(s)	276, 441
Tru9I	TTAA	2 cut(s)	276, 441
TscAI	CASTG	2 cut(s)	88, 559
TseFI	GTSAC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	1 cut(s)	459
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	2 cut(s)	88, 559
XapI	RAATTY	1 cut(s)	354
XceI	RCATGY	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.