Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003069.1

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Reverse (-)

33616 .. 34700

Gene Structure 1085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003069.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgaagaactatgacccacaaaaggacaagcgtttcagtggttccgtgaagcttccccacattcctcgtcctaagatgagggtttgcatgcttggagatgctcagcatgttgaagaggcagagaagatgggattggcctacatggatgtggaatcgctgaaaaagcttaacaagaacaagaagctggtcaagaagcttgcaaagaagtatcatgcttttttggcttctgaagctgtcatcaagcaaattcctcgtcttttgggccctggtcttaacaaggcaggtaaatttccaactctggtgagtcaccaggaatctctggaggcaaagcttaatgaaacaaaggccatggttaagttccaactaaagaaggttctttgtatgggtgttgccgtcgggaatcttgccatggatgagaaacagatattccagaatgtgcaactcagtgtcaatttcttggtttctctgttgaagaagaattggcagaatgtgagatcattgaacttgaaaagcaccatggggaaagctatccgaatttactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

180

Amino Acids

20.41

Weight (kDa)

10.06

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	272
AcsI	RAATTY	3 cut(s)	246, 287, 534
AcuI	CTGAAG	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	4 cut(s)	113, 472, 502, 508
AjnI	CCWGG	2 cut(s)	265, 309
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	7 cut(s)	52, 166, 184, 196, 233, 331, 527
AluI	AGCT	7 cut(s)	52, 166, 184, 196, 233, 331, 527
AoxI	GGCC	3 cut(s)	135, 262, 345
ApaI	GGGCCC	1 cut(s)	266
ApoI	RAATTY	3 cut(s)	246, 287, 534
ArsI	GACNNNNNNTTYG	2 cut(s)	238, 270
AspS9I	GGNCC	2 cut(s)	262, 263
AsuHPI	GGTGA	2 cut(s)	299, 313
BaeGI	GKGCMC	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	266
BccI	CCATC	1 cut(s)	121
BceAI	ACGGC	1 cut(s)	377
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	2 cut(s)	267, 311
BfuAI	ACCTGC	1 cut(s)	272
BlpI	GCTNAGC	1 cut(s)	102
Bme1390I	CCNGG	2 cut(s)	267, 311
BmgT120I	GGNCC	2 cut(s)	262, 263
BmiI	GGNNCC	2 cut(s)	43, 264
BmrFI	CCNGG	2 cut(s)	267, 311
BmsI	GCATC	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	341
Bpu1102I	GCTNAGC	1 cut(s)	102
BsaJI	CCNNGG	4 cut(s)	265, 348, 408, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
BseBI	CCWGG	2 cut(s)	267, 311
BseDI	CCNNGG	4 cut(s)	265, 348, 408, 516
BseGI	GGATG	2 cut(s)	151, 418
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMII	CTCAG	2 cut(s)	116, 457
BseSI	GKGCMC	1 cut(s)	266
BshFI	GGCC	3 cut(s)	137, 264, 347
BslI	CCNNNNNNNGG	1 cut(s)	22
BsnI	GGCC	3 cut(s)	137, 264, 347
Bsp120I	GGGCCC	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	1 cut(s)	494
Bsp1720I	GCTNAGC	1 cut(s)	102
Bsp19I	CCATGG	3 cut(s)	348, 408, 516
BspANI	GGCC	3 cut(s)	137, 264, 347
BspCNI	CTCAG	2 cut(s)	115, 456
BspLI	GGNNCC	2 cut(s)	43, 264
BspMI	ACCTGC	1 cut(s)	272
BssECI	CCNNGG	4 cut(s)	265, 348, 408, 516
BssMI	GATC	1 cut(s)	494
BssT1I	CCWWGG	3 cut(s)	348, 408, 516
Bst2UI	CCWGG	2 cut(s)	267, 311
Bst6I	CTCTTC	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	89, 198
BstDEI	CTNAG	3 cut(s)	72, 102, 443
BstDSI	CCRYGG	3 cut(s)	348, 408, 516
BstF5I	GGATG	2 cut(s)	151, 418
BstKTI	GATC	1 cut(s)	497
BstMBI	GATC	1 cut(s)	494
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 221, 230
BstNI	CCWGG	2 cut(s)	267, 311
BstNSI	RCATGY	2 cut(s)	91, 110
BstSCI	CCNGG	2 cut(s)	265, 309
BstSLI	GKGCMC	1 cut(s)	266
BsuRI	GGCC	3 cut(s)	137, 264, 347
BtgI	CCRYGG	3 cut(s)	348, 408, 516
BtsCI	GGATG	2 cut(s)	151, 418
BtsIMutI	CAGTG	2 cut(s)	43, 451
BveI	ACCTGC	1 cut(s)	272
Cac8I	GCNNGC	2 cut(s)	89, 198
Cfr13I	GGNCC	2 cut(s)	262, 263
CviAII	CATG	7 cut(s)	88, 107, 142, 212, 349, 409, 517
DdeI	CTNAG	3 cut(s)	72, 102, 443
DpnI	GATC	1 cut(s)	496
DpnII	GATC	1 cut(s)	494
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	3 cut(s)	348, 408, 516
Eco24I	GRGCYC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	265, 309
EcoT14I	CCWWGG	3 cut(s)	348, 408, 516
EcoT38I	GRGCYC	1 cut(s)	266
ErhI	CCWWGG	3 cut(s)	348, 408, 516
FaeI	CATG	7 cut(s)	91, 110, 145, 215, 352, 412, 520
FaiI	YATR	9 cut(s)	12, 89, 108, 143, 213, 350, 383, 410, 518
FatI	CATG	7 cut(s)	87, 106, 141, 211, 348, 408, 516
FokI	GGATG	2 cut(s)	158, 425
FriOI	GRGCYC	1 cut(s)	266
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	3 cut(s)	137, 264, 347
Hin1II	CATG	7 cut(s)	91, 110, 145, 215, 352, 412, 520
HindIII	AAGCTT	4 cut(s)	50, 164, 194, 329
HinfI	GANTC	4 cut(s)	152, 304, 314, 400
HphI	GGTGA	2 cut(s)	299, 313
Hpy188I	TCNGA	2 cut(s)	229, 533
Hpy188III	TCNNGA	4 cut(s)	190, 320, 397, 430
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	1 cut(s)	364
HpyCH4V	TGCA	3 cut(s)	87, 200, 439
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 221, 230
HpyF3I	CTNAG	3 cut(s)	72, 102, 443
Hsp92II	CATG	7 cut(s)	91, 110, 145, 215, 352, 412, 520
Kzo9I	GATC	1 cut(s)	494
LpnPI	CCDG	9 cut(s)	170, 252, 267, 279, 284, 296, 305, 323, 443
LweI	GCATC	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	1 cut(s)	496
MboI	GATC	1 cut(s)	494
MboII	GAAGA	5 cut(s)	16, 125, 136, 484, 487
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	5 cut(s)	246, 287, 451, 478, 534
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	2 cut(s)	317, 385
MnlI	CCTC	5 cut(s)	72, 75, 109, 261, 316
MseI	TTAA	4 cut(s)	168, 273, 333, 354
MslI	CAYNNNNRTG	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	267, 311
MvaI	CCWGG	2 cut(s)	267, 311
MwoI	GCNNNNNNNGC	3 cut(s)	163, 221, 230
NcoI	CCATGG	3 cut(s)	348, 408, 516
NdeII	GATC	1 cut(s)	494
NlaIII	CATG	7 cut(s)	91, 110, 145, 215, 352, 412, 520
NlaIV	GGNNCC	2 cut(s)	43, 264
NmuCI	GTSAC	1 cut(s)	305
NspI	RCATGY	2 cut(s)	91, 110
PaeI	GCATGC	1 cut(s)	91
PfeI	GAWTC	3 cut(s)	152, 314, 400
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
Psp6I	CCWGG	2 cut(s)	265, 309
PspGI	CCWGG	2 cut(s)	265, 309
PspN4I	GGNNCC	2 cut(s)	43, 264
PspOMI	GGGCCC	1 cut(s)	262
PspPI	GGNCC	2 cut(s)	262, 263
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	4 cut(s)	168, 273, 333, 354
Sau3AI	GATC	1 cut(s)	494
Sau96I	GGNCC	2 cut(s)	262, 263
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	2 cut(s)	267, 311
SduI	GDGCHC	1 cut(s)	266
SetI	ASST	9 cut(s)	54, 168, 186, 198, 235, 286, 333, 375, 529
SfaNI	GCATC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	146
SphI	GCATGC	1 cut(s)	91
Sse9I	AATT	5 cut(s)	246, 287, 451, 478, 534
StyD4I	CCNGG	2 cut(s)	265, 309
StyI	CCWWGG	3 cut(s)	348, 408, 516
TasI	AATT	5 cut(s)	246, 287, 451, 478, 534
TfiI	GAWTC	3 cut(s)	152, 314, 400
Tru1I	TTAA	4 cut(s)	168, 273, 333, 354
Tru9I	TTAA	4 cut(s)	168, 273, 333, 354
TscAI	CASTG	2 cut(s)	43, 451
TseFI	GTSAC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	17, 351
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	2 cut(s)	43, 451
XapI	RAATTY	3 cut(s)	246, 287, 534
XceI	RCATGY	2 cut(s)	91, 110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.