Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Forward (+)

8727064 .. 8729282

Gene Structure 2219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g09940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAGTAAACTTCAGAGTGATACTCTCCGAGAGGGTATTTCTGTCATCATGAATGCGTCCAAGGAAAAAAAACGTAACTTCACTGAGACTATTGAACTTCAGATTGGGCTGAAAAATTATGATCCTCAGAAGGACAAGCGTTTCAGTGGTTCTGTTAGGTTGCCACACATCCCTCGTCCAAAGATGAAGGTCTGCATGCTTGGAGATGCTCAGCATGTTGAGGAGGCTGAAAAGATTGGGTTGGACTATATGGATGTTGAAGGGCTGAAGAAGCTAAACAAGAACAAAAAGTTGGTTAAGAAGTTGGCAAAGAAATACCATGCCTTTCTGGCTTCAGAAGCTGTTATTAAGCAGATTCCCCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGAAAATTTCCAACCCTTGTTAGCCACCAAGAATCCCTCGAGTCTAAGGTTTCCGAGACAAAAGCAATGATCAAGTTCCAACTGAAGAAGGTTCTTTGTATGGGAGTTGCTGTAGGGAATGTATCCATGGAAGAGAAGCAGGTCTTTCAAAACGTCCAATTGAGTGTTAACTTTCTTGTTTCGCTGTTGAAGAAAAATTGGCAAAATGTAAGGTGCTTGCATTTGAAGACTACCATGGGTAAGCCATATCGCATCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

217

Amino Acids

24.58

Weight (kDa)

9.9

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	520
AclWI	GGATC	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	4 cut(s)	83, 287, 318, 494
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgsI	TTSAA	5 cut(s)	95, 260, 539, 580, 616
AjnI	CCWGG	1 cut(s)	373
AjuI	GAANNNNNNNTTGG	4 cut(s)	87, 119, 275, 307
AluBI	AGCT	2 cut(s)	274, 341
AluI	AGCT	2 cut(s)	274, 341
Alw26I	GTCTC	3 cut(s)	80, 383, 440
AlwI	GGATC	1 cut(s)	116
AlwNI	CAGNNNCTG	1 cut(s)	341
Ama87I	CYCGRG	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	395
AspS9I	GGNCC	1 cut(s)	371
AvaI	CYCGRG	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	371
BbsI	GAAGAC	1 cut(s)	623
BciT130I	CCWGG	1 cut(s)	375
BciVI	GTATCC	1 cut(s)	523
BclI	TGATCA	1 cut(s)	459
BcoDI	GTCTC	3 cut(s)	80, 383, 440
BfmI	CTRYAG	1 cut(s)	501
BfuAI	ACCTGC	1 cut(s)	520
BfuI	GTATCC	1 cut(s)	523
BglI	GCCNNNNNGGC	1 cut(s)	329
BlpI	GCTNAGC	1 cut(s)	210
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	371
BmeT110I	CYCGRG	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	372
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	623
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
Bpu1102I	GCTNAGC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	3 cut(s)	60, 516, 624
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	3 cut(s)	60, 516, 624
BseGI	GGATG	2 cut(s)	168, 259
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	3 cut(s)	75, 140, 224
BseRI	GAGGAG	1 cut(s)	236
BsiHKCI	CYCGRG	1 cut(s)	428
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	3 cut(s)	80, 383, 440
BsmI	GAATGC	1 cut(s)	58
Bso31I	GGTCTC	1 cut(s)	383
BsoBI	CYCGRG	1 cut(s)	428
Bsp143I	GATC	2 cut(s)	121, 459
Bsp1720I	GCTNAGC	1 cut(s)	210
Bsp19I	CCATGG	2 cut(s)	516, 624
BspCNI	CTCAG	3 cut(s)	76, 139, 223
BspHI	TCATGA	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	372
BspMI	ACCTGC	1 cut(s)	520
BspPI	GGATC	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	462
BssECI	CCNNGG	3 cut(s)	60, 516, 624
BssMI	GATC	2 cut(s)	121, 459
BssT1I	CCWWGG	3 cut(s)	60, 516, 624
Bst2UI	CCWGG	1 cut(s)	375
Bst6I	CTCTTC	1 cut(s)	516
BstC8I	GCNNGC	2 cut(s)	197, 608
BstDEI	CTNAG	4 cut(s)	84, 126, 210, 435
BstDSI	CCRYGG	2 cut(s)	516, 624
BstF5I	GGATG	2 cut(s)	168, 259
BstKTI	GATC	2 cut(s)	124, 462
BstMAI	GTCTC	3 cut(s)	80, 383, 440
BstMBI	GATC	2 cut(s)	121, 459
BstMWI	GCNNNNNNNGC	3 cut(s)	271, 329, 338
BstNI	CCWGG	1 cut(s)	375
BstNSI	RCATGY	2 cut(s)	199, 218
BstSCI	CCNGG	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	501
BstV2I	GAAGAC	1 cut(s)	623
BsuI	GTATCC	1 cut(s)	523
BtgI	CCRYGG	2 cut(s)	516, 624
BtsCI	GGATG	2 cut(s)	168, 259
BtsIMutI	CAGTG	2 cut(s)	81, 151
BveI	ACCTGC	1 cut(s)	520
Cac8I	GCNNGC	2 cut(s)	197, 608
CaiI	CAGNNNCTG	1 cut(s)	341
CciI	TCATGA	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	371
CseI	GACGC	1 cut(s)	45
CviAII	CATG	6 cut(s)	49, 196, 215, 320, 517, 625
CviJI	RGCY	8 cut(s)	109, 227, 265, 274, 332, 341, 414, 634
CviKI_1	RGCY	8 cut(s)	109, 227, 265, 274, 332, 341, 414, 634
DdeI	CTNAG	4 cut(s)	84, 126, 210, 435
DpnI	GATC	2 cut(s)	123, 461
DpnII	GATC	2 cut(s)	121, 459
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
Eco130I	CCWWGG	3 cut(s)	60, 516, 624
Eco31I	GGTCTC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	371
Eco57I	CTGAAG	4 cut(s)	83, 287, 318, 494
Eco88I	CYCGRG	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	373
EcoT14I	CCWWGG	3 cut(s)	60, 516, 624
ErhI	CCWWGG	3 cut(s)	60, 516, 624
FaeI	CATG	6 cut(s)	52, 199, 218, 323, 520, 628
FalI	AAGNNNNNCTT	2 cut(s)	518, 550
FatI	CATG	6 cut(s)	48, 195, 214, 319, 516, 624
FbaI	TGATCA	1 cut(s)	459
FokI	GGATG	2 cut(s)	155, 266
HgaI	GACGC	1 cut(s)	45
Hin1II	CATG	6 cut(s)	52, 199, 218, 323, 520, 628
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HinfI	GANTC	3 cut(s)	355, 422, 431
HpaI	GTTAAC	1 cut(s)	559
Hpy166II	GTNNAC	2 cut(s)	8, 559
Hpy188I	TCNGA	6 cut(s)	15, 29, 102, 129, 337, 445
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	2 cut(s)	8, 559
HpyAV	CCTTC	4 cut(s)	124, 181, 254, 472
HpyCH4IV	ACGT	2 cut(s)	73, 543
HpyCH4V	TGCA	2 cut(s)	195, 610
HpyF10VI	GCNNNNNNNGC	3 cut(s)	271, 329, 338
HpyF3I	CTNAG	4 cut(s)	84, 126, 210, 435
HpySE526I	ACGT	2 cut(s)	73, 543
Hsp92II	CATG	6 cut(s)	52, 199, 218, 323, 520, 628
Ksp22I	TGATCA	1 cut(s)	459
KspAI	GTTAAC	1 cut(s)	559
Kzo9I	GATC	2 cut(s)	121, 459
LpnPI	CCDG	5 cut(s)	314, 360, 375, 387, 515
LweI	GCATC	1 cut(s)	196
MaeII	ACGT	2 cut(s)	73, 543
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	2 cut(s)	123, 461
MboI	GATC	2 cut(s)	121, 459
MboII	GAAGA	5 cut(s)	280, 487, 533, 592, 628
MfeI	CAATTG	1 cut(s)	548
MluCI	AATT	4 cut(s)	115, 395, 548, 586
MlyI	GAGTC	1 cut(s)	440
MmeI	TCCRAC	3 cut(s)	222, 425, 493
MnlI	CCTC	6 cut(s)	25, 135, 183, 214, 217, 437
MseI	TTAA	4 cut(s)	297, 348, 558, 649
MspR9I	CCNGG	1 cut(s)	375
MunI	CAATTG	1 cut(s)	548
Mva1269I	GAATGC	1 cut(s)	58
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	3 cut(s)	271, 329, 338
NcoI	CCATGG	2 cut(s)	516, 624
NdeII	GATC	2 cut(s)	121, 459
NlaIII	CATG	6 cut(s)	52, 199, 218, 323, 520, 628
NlaIV	GGNNCC	1 cut(s)	372
NspI	RCATGY	2 cut(s)	199, 218
PaeI	GCATGC	1 cut(s)	199
PaeR7I	CTCGAG	1 cut(s)	428
PagI	TCATGA	1 cut(s)	48
PctI	GAATGC	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	355, 422
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PpuMI	RGGWCCY	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	1 cut(s)	372
PspPI	GGNCC	1 cut(s)	371
PspPPI	RGGWCCY	1 cut(s)	371
PspXI	VCTCGAGB	1 cut(s)	428
PstNI	CAGNNNCTG	1 cut(s)	341
SaqAI	TTAA	4 cut(s)	297, 348, 558, 649
Sau3AI	GATC	2 cut(s)	121, 459
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	1 cut(s)	375
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	501
Sfr274I	CTCGAG	1 cut(s)	428
SinI	GGWCC	1 cut(s)	371
SlaI	CTCGAG	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SphI	GCATGC	1 cut(s)	199
Sse9I	AATT	4 cut(s)	115, 395, 548, 586
StyD4I	CCNGG	1 cut(s)	373
StyI	CCWWGG	3 cut(s)	60, 516, 624
TaiI	ACGT	2 cut(s)	76, 546
TaqI	TCGA	1 cut(s)	429
TasI	AATT	4 cut(s)	115, 395, 548, 586
TfiI	GAWTC	2 cut(s)	355, 422
Tru1I	TTAA	4 cut(s)	297, 348, 558, 649
Tru9I	TTAA	4 cut(s)	297, 348, 558, 649
TscAI	CASTG	2 cut(s)	88, 151
TspDTI	ATGAA	2 cut(s)	65, 200
TspRI	CASTG	2 cut(s)	88, 151
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	1 cut(s)	395
XceI	RCATGY	2 cut(s)	199, 218
XhoI	CTCGAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.