Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Forward (+)

2064927 .. 2067638

Gene Structure 2712 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1022900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAGTAAGCTGTCAAGCGATGGGCTGAGGGAAGCCATTTCTCAGATTAAGACGAACTCTGAGACAAAGAAGAGGAAGTTCACTGAGACAGTGGAGCTTCAGATTGGTCTGAAGAACTATGACCCCCAAAAGGACAAGCGTTTCAGTGGTTCTGTCAGGCTTCCACACATTCCTCGCCCTAAGATGAGGGTTTGCATGCTTGGAGACGCCCAGCATGTTGAAGAGGCAGAGAAGATGGGTTTGGATTATATGGACGTGGAAAGCTTGAAAAAGCTGAACAAGAACAAGAAACTTGTGAAGAAGCTTGCCAAGAAATACCATGCCTTTTTAGCTTCTGAAGCTGTCATTAAGCAGATTCCTCGTCTTCTTGGCCCTGGTCTTAACAAGGCAGGTAAGTTTCCAACCTTGGTGAGTCACCAGGAATCTCTGGAGGCAAAACTTAACGAGACCAAAGCTATGGTGAAGTTCCAACTTAAGAAGGTTCTTTGCATGGGTGTTGCTGTCGGGAATCTCGCTATGGAGGAGAAGCAGATTTTCCAGAATGTACAACTCAGTGTCAATTTCTTGGTTTCATTGTTGAAGAAGAACTGGCAAAATGTGAGGTCCTTGAACTTGAAGAGTACGATGGGGAAAGCTATCCGTATCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

217

Amino Acids

24.51

Weight (kDa)

10.0

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	21 - 210	3.5e-52	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	380
AcuI	CTGAAG	3 cut(s)	83, 131, 357
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	2 cut(s)	546, 622
AfiI	CCNNNNNNNGG	1 cut(s)	130
AflII	CTTAAG	1 cut(s)	473
AgsI	TTSAA	5 cut(s)	221, 268, 580, 610, 616
AjiI	CACGTC	1 cut(s)	256
AjnI	CCWGG	2 cut(s)	373, 417
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	9 cut(s)	10, 97, 264, 274, 304, 332, 341, 455, 635
AluI	AGCT	9 cut(s)	10, 97, 264, 274, 304, 332, 341, 455, 635
Alw26I	GTCTC	4 cut(s)	56, 80, 198, 440
AoxI	GGCC	1 cut(s)	370
AspS9I	GGNCC	2 cut(s)	371, 603
AsuHPI	GGTGA	3 cut(s)	407, 421, 472
AvaII	GGWCC	1 cut(s)	603
BbsI	GAAGAC	1 cut(s)	356
BbvCI	CCTCAGC	1 cut(s)	26
BccI	CCATC	3 cut(s)	14, 229, 619
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	2 cut(s)	375, 419
BcoDI	GTCTC	4 cut(s)	56, 80, 198, 440
BfrI	CTTAAG	1 cut(s)	473
BfuAI	ACCTGC	1 cut(s)	380
Bme1390I	CCNGG	2 cut(s)	375, 419
Bme18I	GGWCC	1 cut(s)	603
BmgBI	CACGTC	1 cut(s)	256
BmgT120I	GGNCC	2 cut(s)	371, 603
BmrFI	CCNGG	2 cut(s)	375, 419
BpiI	GAAGAC	1 cut(s)	356
BpmI	CTGGAG	1 cut(s)	449
Bpu10I	CCTNAGC	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	373, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	593
BseBI	CCWGG	2 cut(s)	375, 419
BseDI	CCNNGG	2 cut(s)	373, 405
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMII	CTCAG	5 cut(s)	17, 51, 56, 75, 565
BseNI	ACTGG	1 cut(s)	593
BseRI	GAGGAG	1 cut(s)	536
BseYI	CCCAGC	1 cut(s)	210
BshFI	GGCC	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	4 cut(s)	56, 80, 198, 440
BsmBI	CGTCTC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	372
Bso31I	GGTCTC	1 cut(s)	440
Bsp1407I	TGTACA	1 cut(s)	544
BspANI	GGCC	1 cut(s)	372
BspCNI	CTCAG	5 cut(s)	18, 52, 55, 76, 564
BspMI	ACCTGC	1 cut(s)	380
BspTI	CTTAAG	1 cut(s)	473
BspTNI	GGTCTC	1 cut(s)	440
BsrGI	TGTACA	1 cut(s)	544
BsrI	ACTGG	1 cut(s)	593
BssECI	CCNNGG	2 cut(s)	373, 405
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	405
Bst2UI	CCWGG	2 cut(s)	375, 419
Bst4CI	ACNGT	1 cut(s)	91
Bst6I	CTCTTC	3 cut(s)	65, 216, 611
BstACI	GRCGYC	1 cut(s)	207
BstAFI	CTTAAG	1 cut(s)	473
BstAUI	TGTACA	1 cut(s)	544
BstC8I	GCNNGC	2 cut(s)	197, 306
BstDEI	CTNAG	6 cut(s)	26, 42, 60, 84, 180, 551
BstMAI	GTCTC	4 cut(s)	56, 80, 198, 440
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 338
BstNI	CCWGG	2 cut(s)	375, 419
BstNSI	RCATGY	2 cut(s)	199, 218
BstSCI	CCNGG	2 cut(s)	373, 417
BstV2I	GAAGAC	1 cut(s)	356
BstXI	CCANNNNNNTGG	1 cut(s)	457
BsuRI	GGCC	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	33
BtrI	CACGTC	1 cut(s)	256
BtsIMutI	CAGTG	4 cut(s)	81, 96, 151, 559
BveI	ACCTGC	1 cut(s)	380
Cac8I	GCNNGC	2 cut(s)	197, 306
Cfr13I	GGNCC	2 cut(s)	371, 603
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	545, 621
CviAII	CATG	4 cut(s)	196, 215, 320, 490
CviQI	GTAC	2 cut(s)	545, 621
DdeI	CTNAG	6 cut(s)	26, 42, 60, 84, 180, 551
Eam1104I	CTCTTC	3 cut(s)	65, 216, 611
EarI	CTCTTC	3 cut(s)	65, 216, 611
Eco130I	CCWWGG	1 cut(s)	405
Eco31I	GGTCTC	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	603
Eco57I	CTGAAG	3 cut(s)	83, 131, 357
EcoO109I	RGGNCCY	1 cut(s)	603
EcoRII	CCWGG	2 cut(s)	373, 417
EcoT14I	CCWWGG	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	405
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	4 cut(s)	199, 218, 323, 493
FaiI	YATR	9 cut(s)	120, 197, 216, 249, 251, 321, 458, 491, 518
FatI	CATG	4 cut(s)	195, 214, 319, 489
GsaI	CCCAGC	1 cut(s)	214
GsuI	CTGGAG	1 cut(s)	449
HaeIII	GGCC	1 cut(s)	372
HgaI	GACGC	1 cut(s)	215
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	4 cut(s)	199, 218, 323, 493
HindIII	AAGCTT	2 cut(s)	262, 302
HinfI	GANTC	4 cut(s)	355, 412, 422, 508
HphI	GGTGA	3 cut(s)	407, 421, 472
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	5 cut(s)	45, 61, 102, 111, 337
Hpy188III	TCNNGA	3 cut(s)	428, 505, 538
Hpy8I	GTNNAC	1 cut(s)	81
HpyAV	CCTTC	1 cut(s)	472
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	2 cut(s)	195, 489
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 338
HpyF3I	CTNAG	6 cut(s)	26, 42, 60, 84, 180, 551
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	4 cut(s)	199, 218, 323, 493
LmnI	GCTCC	1 cut(s)	94
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	413
MboII	GAAGA	9 cut(s)	82, 124, 233, 244, 310, 356, 592, 595, 628
MluCI	AATT	1 cut(s)	559
MlyI	GAGTC	1 cut(s)	421
MmeI	TCCRAC	2 cut(s)	425, 493
MnlI	CCTC	9 cut(s)	21, 66, 180, 183, 217, 369, 424, 514, 594
MseI	TTAA	5 cut(s)	48, 348, 381, 441, 474
MspCI	CTTAAG	1 cut(s)	473
MspR9I	CCNGG	2 cut(s)	375, 419
MvaI	CCWGG	2 cut(s)	375, 419
MwoI	GCNNNNNNNGC	2 cut(s)	329, 338
NlaIII	CATG	4 cut(s)	199, 218, 323, 493
NmuCI	GTSAC	1 cut(s)	413
NspI	RCATGY	2 cut(s)	199, 218
PaeI	GCATGC	1 cut(s)	199
PfeI	GAWTC	3 cut(s)	355, 422, 508
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
PpuMI	RGGWCCY	1 cut(s)	603
Psp5II	RGGWCCY	1 cut(s)	603
Psp6I	CCWGG	2 cut(s)	373, 417
PspFI	CCCAGC	1 cut(s)	210
PspGI	CCWGG	2 cut(s)	373, 417
PspPI	GGNCC	2 cut(s)	371, 603
PspPPI	RGGWCCY	1 cut(s)	603
RsaI	GTAC	2 cut(s)	546, 622
RsaNI	GTAC	2 cut(s)	545, 621
SaqAI	TTAA	5 cut(s)	48, 348, 381, 441, 474
Sau96I	GGNCC	2 cut(s)	371, 603
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	2 cut(s)	375, 419
SinI	GGWCC	1 cut(s)	603
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
SphI	GCATGC	1 cut(s)	199
Sse9I	AATT	1 cut(s)	559
StyD4I	CCNGG	2 cut(s)	373, 417
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	1 cut(s)	91
TaiI	ACGT	1 cut(s)	258
TasI	AATT	1 cut(s)	559
TatI	WGTACW	1 cut(s)	544
TfiI	GAWTC	3 cut(s)	355, 422, 508
Tru1I	TTAA	5 cut(s)	48, 348, 381, 441, 474
Tru9I	TTAA	5 cut(s)	48, 348, 381, 441, 474
TscAI	CASTG	4 cut(s)	88, 96, 151, 559
TseFI	GTSAC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	1 cut(s)	561
TspGWI	ACGGA	1 cut(s)	629
TspRI	CASTG	4 cut(s)	88, 96, 151, 559
Vha464I	CTTAAG	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	603
XceI	RCATGY	2 cut(s)	199, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.