Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Forward (+)

39879825 .. 39884510

Gene Structure 4686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034282

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAGTAAGCTTCAGAGTGATTCTCTTAGGGAGGCTATTTCTATCATGAAGGCCGCTTCCAAGGAAAAGAGTCGTAAGTTAACAGAAACTACAGAACTTCAGATTGGGCTGAAAAATTATGATCCCCAAAAGGACAAGCGTTTCAGTGGTTCCGTTAAGTTGCCACACATTCCTCGTCCAAAGATGAAGGTCTGCATGCTTGGAGATGCTCCGCATATTGAAGAGGCTCAGAAGATCGGTTTGGAGTACGTGGATGTAGAAGCGCTGAAGAAGTTAAACAAGAACAAGAAATTGGTTAAGAAACCGGCTAAAAACGTACCATGCCTCTTTAGCATCAGAAGCTGTTATCAAGCAGATTCCCCGTCTTTTGGGTCTTGGTCTCAACAAGGCATGTTGCGAGGCCTCCTCTTCTCTTCTCTACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

142

Amino Acids

15.89

Weight (kDa)

9.83

Isoelectric Point (pI)

68.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	21 - 105	6.6e-16	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	54, 212
AclWI	GGATC	1 cut(s)	116
AcuI	CTGAAG	2 cut(s)	83, 287
AfaI	GTAC	2 cut(s)	248, 318
AfeI	AGCGCT	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgsI	TTSAA	1 cut(s)	221
AjuI	GAANNNNNNNTTGG	6 cut(s)	87, 119, 224, 256, 275, 307
AluBI	AGCT	2 cut(s)	10, 342
AluI	AGCT	2 cut(s)	10, 342
Alw26I	GTCTC	1 cut(s)	384
AlwI	GGATC	1 cut(s)	116
AlwNI	CAGNNNCTG	1 cut(s)	342
Aor51HI	AGCGCT	1 cut(s)	264
AoxI	GGCC	2 cut(s)	51, 400
AspLEI	GCGC	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	90
BfoI	RGCGCY	1 cut(s)	266
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	151
BmsI	GCATC	2 cut(s)	196, 342
BplI	GAGNNNNNCTC	4 cut(s)	7, 39, 390, 422
BsaAI	YACGTR	1 cut(s)	250
BsaI	GGTCTC	1 cut(s)	384
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse118I	RCCGGY	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMII	CTCAG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	395
BshFI	GGCC	2 cut(s)	53, 402
BsiSI	CCGG	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	1 cut(s)	384
BsnI	GGCC	2 cut(s)	53, 402
Bso31I	GGTCTC	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	121, 234
BspACI	CCGC	2 cut(s)	54, 212
BspANI	GGCC	2 cut(s)	53, 402
BspCNI	CTCAG	1 cut(s)	241
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	151
BspPI	GGATC	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	384
BsrFI	RCCGGY	1 cut(s)	304
BssAI	RCCGGY	1 cut(s)	304
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	2 cut(s)	121, 234
BssT1I	CCWWGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	423
Bst6I	CTCTTC	3 cut(s)	216, 413, 418
BstBAI	YACGTR	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	2 cut(s)	26, 228
BstF5I	GGATG	1 cut(s)	259
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	2 cut(s)	124, 237
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	2 cut(s)	121, 234
BstMWI	GCNNNNNNNGC	2 cut(s)	330, 339
BstNSI	RCATGY	2 cut(s)	199, 394
BstSFI	CTRYAG	1 cut(s)	90
BsuRI	GGCC	2 cut(s)	53, 402
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	197
CaiI	CAGNNNCTG	1 cut(s)	342
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	304
Csp6I	GTAC	2 cut(s)	247, 317
CviAII	CATG	4 cut(s)	46, 196, 321, 391
CviJI	RGCY	8 cut(s)	10, 35, 53, 109, 227, 308, 342, 402
CviKI_1	RGCY	8 cut(s)	10, 35, 53, 109, 227, 308, 342, 402
CviQI	GTAC	2 cut(s)	247, 317
DdeI	CTNAG	2 cut(s)	26, 228
DpnI	GATC	2 cut(s)	123, 236
DpnII	GATC	2 cut(s)	121, 234
Eam1104I	CTCTTC	3 cut(s)	216, 413, 418
EarI	CTCTTC	3 cut(s)	216, 413, 418
Eco130I	CCWWGG	1 cut(s)	60
Eco147I	AGGCCT	1 cut(s)	402
Eco31I	GGTCTC	1 cut(s)	384
Eco47III	AGCGCT	1 cut(s)	264
Eco57I	CTGAAG	2 cut(s)	83, 287
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	4 cut(s)	49, 199, 324, 394
FaiI	YATR	6 cut(s)	47, 120, 197, 216, 322, 392
FatI	CATG	4 cut(s)	45, 195, 320, 390
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	54
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	54
HaeII	RGCGCY	1 cut(s)	266
HaeIII	GGCC	2 cut(s)	53, 402
HapII	CCGG	1 cut(s)	305
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	4 cut(s)	49, 199, 324, 394
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	3 cut(s)	20, 70, 356
HpaI	GTTAAC	1 cut(s)	81
HpaII	CCGG	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	4 cut(s)	15, 102, 231, 338
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	1 cut(s)	81
HpyAV	CCTTC	2 cut(s)	43, 181
HpyCH4III	ACNGT	1 cut(s)	423
HpyCH4IV	ACGT	2 cut(s)	249, 315
HpyCH4V	TGCA	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	330, 339
HpyF3I	CTNAG	2 cut(s)	26, 228
HpySE526I	ACGT	2 cut(s)	249, 315
Hsp92II	CATG	4 cut(s)	49, 199, 324, 394
HspAI	GCGC	1 cut(s)	263
KspAI	GTTAAC	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	121, 234
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	1 cut(s)	318
LweI	GCATC	2 cut(s)	196, 342
MaeII	ACGT	2 cut(s)	249, 315
MalI	GATC	2 cut(s)	123, 236
MboI	GATC	2 cut(s)	121, 234
MboII	GAAGA	5 cut(s)	233, 244, 280, 400, 405
MluCI	AATT	2 cut(s)	115, 290
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	7 cut(s)	25, 183, 217, 335, 392, 413, 416
MseI	TTAA	4 cut(s)	80, 156, 275, 297
MspI	CCGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	2 cut(s)	330, 339
NdeII	GATC	2 cut(s)	121, 234
NlaIII	CATG	4 cut(s)	49, 199, 324, 394
NlaIV	GGNNCC	1 cut(s)	151
NspI	RCATGY	2 cut(s)	199, 394
PaeI	GCATGC	1 cut(s)	199
PagI	TCATGA	1 cut(s)	45
PceI	AGGCCT	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	20, 356
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
Ppu21I	YACGTR	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	151
PstNI	CAGNNNCTG	1 cut(s)	342
RsaI	GTAC	2 cut(s)	248, 318
RsaNI	GTAC	2 cut(s)	247, 317
SaqAI	TTAA	4 cut(s)	80, 156, 275, 297
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	2 cut(s)	121, 234
SchI	GAGTC	1 cut(s)	79
SetI	ASST	5 cut(s)	12, 192, 252, 318, 344
SfaNI	GCATC	2 cut(s)	196, 342
SfcI	CTRYAG	1 cut(s)	90
SphI	GCATGC	1 cut(s)	199
Sse9I	AATT	2 cut(s)	115, 290
SseBI	AGGCCT	1 cut(s)	402
SsiI	CCGC	2 cut(s)	54, 212
StuI	AGGCCT	1 cut(s)	402
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	423
TaiI	ACGT	2 cut(s)	252, 318
TasI	AATT	2 cut(s)	115, 290
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	20, 356
Tru1I	TTAA	4 cut(s)	80, 156, 275, 297
Tru9I	TTAA	4 cut(s)	80, 156, 275, 297
TscAI	CASTG	1 cut(s)	151
TspDTI	ATGAA	2 cut(s)	62, 200
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	151
XceI	RCATGY	2 cut(s)	199, 394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.