Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00399

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Forward (+)

1264 .. 2881

Gene Structure 1618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G009840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAGTAAGCTTCAGAGTGATACTCTCAGGGAGGCTATCTCTATCATCATGGCCGCTTCCAAGGAAAAGAGTCGTAAGTTCACAGAAACTATAGAACTTCAGATTGGGCTGAAAAATTATGATCCCCAAAAGGACAAGCGTTTCAGTGGTTCCGTTAAGTTGCCACACATTCCTCGTCCAAAGATGAAGGTCTGCATGCTTGGAGATGCTCAGCATGTTGAAGAGTTAAACAAGAACAAGAAATTGGTTAAGAAACTGGCTAAGAAGTACCATGCCTTTTTAGCATCAGAAGCTGTTATCAAGCAGATTCCCCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGAAAGTTCCCCACCCTTGTTTCTCACCAAGAATCCCTAGAGTCTAAAATTTCTGAGACAAAAGCAACAATTAAGTTCCAATTGAAGAAGGTTCTTTGCATGGGAGTTGCTGTAGGGAATGTCTCAATGGAGGAGAAGCAAATCTTCCAAAATGTGCAATTGAGTGTGAACTTCCTTGTTTCACTATTGAAAAAAAATTGGCAAAATGTAAAGTGCTTGAACCTGAAGACCACTATGGGGAAGCCATATCGCATTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

200

Amino Acids

22.67

Weight (kDa)

9.99

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	21 - 194	5.8e-42	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	390
AcuI	CTGAAG	2 cut(s)	83, 587
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	2 cut(s)	319, 579
AgsI	TTSAA	4 cut(s)	221, 427, 532, 562
AjnI	CCWGG	1 cut(s)	325
AjuI	GAANNNNNNNTTGG	4 cut(s)	87, 119, 227, 259
AluBI	AGCT	2 cut(s)	10, 293
AluI	AGCT	2 cut(s)	10, 293
Alw26I	GTCTC	3 cut(s)	335, 392, 469
AlwI	GGATC	1 cut(s)	116
AlwNI	CAGNNNCTG	1 cut(s)	293
AoxI	GGCC	1 cut(s)	51
ApoI	RAATTY	1 cut(s)	390
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	575
BciT130I	CCWGG	1 cut(s)	327
BcoDI	GTCTC	3 cut(s)	335, 392, 469
BfaI	CTAG	1 cut(s)	380
BfmI	CTRYAG	2 cut(s)	90, 453
BisI	GCNGC	1 cut(s)	54
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	2 cut(s)	151, 324
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	2 cut(s)	196, 293
BpiI	GAAGAC	1 cut(s)	575
BplI	GAGNNNNNCTC	4 cut(s)	7, 39, 23, 55
Bpu1102I	GCTNAGC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 579
Bse1I	ACTGG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	60
BseLI	CCNNNNNNNGG	2 cut(s)	319, 579
BseMII	CTCAG	3 cut(s)	40, 224, 387
BseNI	ACTGG	1 cut(s)	261
BseRI	GAGGAG	1 cut(s)	488
BshFI	GGCC	1 cut(s)	53
BslI	CCNNNNNNNGG	2 cut(s)	319, 579
BsmAI	GTCTC	3 cut(s)	335, 392, 469
BsnI	GGCC	1 cut(s)	53
Bso31I	GGTCTC	1 cut(s)	335
Bsp143I	GATC	1 cut(s)	121
Bsp1720I	GCTNAGC	1 cut(s)	210
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	3 cut(s)	39, 223, 388
BspLI	GGNNCC	2 cut(s)	151, 324
BspPI	GGATC	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	327
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	4 cut(s)	26, 210, 261, 396
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	3 cut(s)	335, 392, 469
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 290
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	2 cut(s)	199, 218
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	2 cut(s)	90, 453
BstV2I	GAAGAC	1 cut(s)	575
BsuRI	GGCC	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	197
CaiI	CAGNNNCTG	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	5 cut(s)	49, 196, 215, 272, 442
CviJI	RGCY	7 cut(s)	10, 35, 53, 109, 260, 293, 586
CviKI_1	RGCY	7 cut(s)	10, 35, 53, 109, 260, 293, 586
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	4 cut(s)	26, 210, 261, 396
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	323
Eco57I	CTGAAG	2 cut(s)	83, 587
EcoO109I	RGGNCCY	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	5 cut(s)	52, 199, 218, 275, 445
FaiI	YATR	9 cut(s)	50, 92, 120, 197, 216, 273, 443, 578, 589
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FatI	CATG	5 cut(s)	48, 195, 214, 271, 441
Fnu4HI	GCNGC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	380
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	53
Hin1II	CATG	5 cut(s)	52, 199, 218, 275, 445
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	4 cut(s)	70, 307, 374, 383
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	2 cut(s)	81, 511
Hpy188I	TCNGA	4 cut(s)	15, 102, 289, 397
Hpy8I	GTNNAC	2 cut(s)	81, 511
HpyAV	CCTTC	2 cut(s)	181, 424
HpyCH4V	TGCA	3 cut(s)	195, 441, 499
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 290
HpyF3I	CTNAG	4 cut(s)	26, 210, 261, 396
Hsp92II	CATG	5 cut(s)	52, 199, 218, 275, 445
Kzo9I	GATC	1 cut(s)	121
LpnPI	CCDG	6 cut(s)	13, 242, 312, 327, 339, 578
LweI	GCATC	2 cut(s)	196, 293
MaeI	CTAG	1 cut(s)	380
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	4 cut(s)	233, 439, 478, 580
MfeI	CAATTG	2 cut(s)	422, 500
MluCI	AATT	7 cut(s)	115, 242, 390, 411, 422, 500, 538
MlyI	GAGTC	2 cut(s)	79, 392
MnlI	CCTC	3 cut(s)	25, 183, 466
MseI	TTAA	4 cut(s)	156, 227, 249, 414
MspR9I	CCNGG	1 cut(s)	327
MunI	CAATTG	2 cut(s)	422, 500
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	281, 290
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	5 cut(s)	52, 199, 218, 275, 445
NlaIV	GGNNCC	2 cut(s)	151, 324
NspI	RCATGY	2 cut(s)	199, 218
PaeI	GCATGC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	307, 374
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	2 cut(s)	78, 391
PpsI	GAGTC	2 cut(s)	78, 391
PpuMI	RGGWCCY	1 cut(s)	323
Psp5II	RGGWCCY	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	151, 324
PspPI	GGNCC	1 cut(s)	323
PspPPI	RGGWCCY	1 cut(s)	323
PstNI	CAGNNNCTG	1 cut(s)	293
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SaqAI	TTAA	4 cut(s)	156, 227, 249, 414
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	1 cut(s)	323
SchI	GAGTC	2 cut(s)	79, 392
ScrFI	CCNGG	1 cut(s)	327
SetI	ASST	5 cut(s)	12, 192, 295, 435, 567
SfaNI	GCATC	2 cut(s)	196, 293
SfcI	CTRYAG	2 cut(s)	90, 453
SinI	GGWCC	1 cut(s)	323
SphI	GCATGC	1 cut(s)	199
Sse9I	AATT	7 cut(s)	115, 242, 390, 411, 422, 500, 538
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	1 cut(s)	60
TasI	AATT	7 cut(s)	115, 242, 390, 411, 422, 500, 538
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	307, 374
Tru1I	TTAA	4 cut(s)	156, 227, 249, 414
Tru9I	TTAA	4 cut(s)	156, 227, 249, 414
TscAI	CASTG	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	200
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	323
XapI	RAATTY	1 cut(s)	390
XceI	RCATGY	2 cut(s)	199, 218
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.