Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Reverse (-)

53188437 .. 53190487

Gene Structure 2051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00036410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCCTTTTTTAGCATCAGAAGCTGTTATCAAGCAGATTCCCCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGAAAGTTCCCAACCCTTGTTTCTCACCAAGAATCCCTGGAGTCTAAAATTTCTGAGACAAAAGCAACAATTAAGTTCCAATTGAAGAAGGTTCTTTGCATGGGAGTTGCTGTAGGGAATGTCTCAATGGAGGAGAAGCAAATCTTCCAAAATGTGCAATTGAGCGTCAACTTTCTTGTTTCACTATTGAAAAAAAATTGGCAAAATGTGAAGTGCTTGAACCTGAAGACCACTATGGGGAAGCCATATCGCATTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

110

Amino Acids

12.35

Weight (kDa)

9.91

Isoelectric Point (pI)

26.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	3 - 104	1e-27	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	317
AfiI	CCNNNNNNNGG	2 cut(s)	49, 309
AgsI	TTSAA	3 cut(s)	157, 262, 292
AjnI	CCWGG	2 cut(s)	55, 108
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw26I	GTCTC	3 cut(s)	65, 122, 199
AlwNI	CAGNNNCTG	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	305
BciT130I	CCWGG	2 cut(s)	57, 110
BcoDI	GTCTC	3 cut(s)	65, 122, 199
BfmI	CTRYAG	1 cut(s)	183
Bme1390I	CCNGG	2 cut(s)	57, 110
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	2 cut(s)	57, 110
BmsI	GCATC	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	305
BpmI	CTGGAG	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	108
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 309
BseBI	CCWGG	2 cut(s)	57, 110
BseDI	CCNNGG	1 cut(s)	108
BseLI	CCNNNNNNNGG	2 cut(s)	49, 309
BseMII	CTCAG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	218
BslI	CCNNNNNNNGG	2 cut(s)	49, 309
BsmAI	GTCTC	3 cut(s)	65, 122, 199
Bso31I	GGTCTC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	118
BspLI	GGNNCC	1 cut(s)	54
BspTNI	GGTCTC	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	57, 110
BstDEI	CTNAG	1 cut(s)	126
BstMAI	GTCTC	3 cut(s)	65, 122, 199
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	2 cut(s)	57, 110
BstSCI	CCNGG	2 cut(s)	55, 108
BstSFI	CTRYAG	1 cut(s)	183
BstV2I	GAAGAC	1 cut(s)	305
CaiI	CAGNNNCTG	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	53
CseI	GACGC	1 cut(s)	226
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	2 cut(s)	23, 316
CviKI_1	RGCY	2 cut(s)	23, 316
DdeI	CTNAG	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRII	CCWGG	2 cut(s)	55, 108
FaeI	CATG	1 cut(s)	175
FaiI	YATR	3 cut(s)	173, 308, 319
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FatI	CATG	1 cut(s)	171
GsuI	CTGGAG	1 cut(s)	131
HgaI	GACGC	1 cut(s)	226
Hin1II	CATG	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	3 cut(s)	37, 104, 113
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	19, 127
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	154
HpyCH4V	TGCA	2 cut(s)	171, 229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	175
LpnPI	CCDG	6 cut(s)	42, 57, 69, 95, 122, 308
LweI	GCATC	1 cut(s)	23
MboII	GAAGA	3 cut(s)	169, 208, 310
MfeI	CAATTG	2 cut(s)	152, 230
MluCI	AATT	5 cut(s)	120, 141, 152, 230, 268
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	1 cut(s)	196
MseI	TTAA	1 cut(s)	144
MspR9I	CCNGG	2 cut(s)	57, 110
MunI	CAATTG	2 cut(s)	152, 230
MvaI	CCWGG	2 cut(s)	57, 110
MwoI	GCNNNNNNNGC	1 cut(s)	20
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	37, 104
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
PpuMI	RGGWCCY	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	55, 108
PspGI	CCWGG	2 cut(s)	55, 108
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	53
PspPPI	RGGWCCY	1 cut(s)	53
PstNI	CAGNNNCTG	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	144
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	57, 110
SetI	ASST	3 cut(s)	25, 165, 297
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	1 cut(s)	183
SinI	GGWCC	1 cut(s)	53
Sse9I	AATT	5 cut(s)	120, 141, 152, 230, 268
StyD4I	CCNGG	2 cut(s)	55, 108
TasI	AATT	5 cut(s)	120, 141, 152, 230, 268
TfiI	GAWTC	2 cut(s)	37, 104
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.