Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001785

Physical Location & Seq

Genomic Coordinates Forward (+)

2927502 .. 2929107

Gene Structure 1606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G09070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGAGTGTAGATCATTGGATCTGACGATTATATCTGCGGAGGATCTCAAAGACGTTCAATTGATCGGTAAACAAGACTTGTACGCCGTCGTTTCCATCAACGGCGACGCTAGGACGAAGCAGAAGACAAAGGTTGATAAAGATTGCGGCACCAAACCTAAATGGAAGCATCAAATGAAGCTCACCGTCGATGACGCAGCGGCGCGTGACAATCGTCTTACTCTTGTTTTCGAGATCGTGGCGGATCGTCCCATCGCTGGTGATAAACCTGTCGGTGAGGTTAGCGTTCCGGTGAAGGAGCTTTTGGATCAGAATAAAGGTGACGAGGAGAAAACGGTTACTTACGCCGTGAGGTTGCCTAACGGGAAGGCGAAAGGATCTCTCAAATTCTCGTTCAAATTTGGGGAAAAGTATACTTATGGATCTTCGAGTGGTCCTCACGCGCCGGTCCCTTCGGCTATGGATCATAAGACTATGGATCAGCCCGTCACCGCTTACCCGCCCGGACACGGTGCACCGTCTGCATACCCTGCTCCTCCCGCGGGTCCTTCTTCCGGATATCCACCACAAGGACATGACGATAAGCACGATGGTGTTTATGGATACCCGCAGCAGGCTGGATATCCAGCTGGAACCGGTGGTTATCCGCCACCTGGTGCATACCCACAACAGGGAGGTTACCCTGGATATCCGCCTCAGCAACAGGGTGGATACCCGGGTTATCCGCCACAGGGTCCATATGGTTACCCGCAACAAGGTTATCCACCACAGGGTCCATACGGTTACCCGCAACAGCAAGCTCATGGTAAACCGCAGAAACCGAAGAAGCATGGTAAGGCTGGAGCTGGAATGGGACTAGGACTTGGGCTTGGAGCTGGTTTATTGGGTGGGTTGTTGGTTGGTGAAGCGGTTTCTGACATCGCTGATATGGGTGACATGGGTGACATGGGTGACATGGGTGGTTTCGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

Protein Analysis

324

Amino Acids

34.19

Weight (kDa)

6.44

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	5 - 109	1.3e-15	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09070
fragaria_vesca	FvH4_6g06320 FvH4_6g06320 FvH4_6g06321
malus_domestica	MD04G1202300.v1.1 MD12G1216300.v1.1
prunus_persica	Prupe.6G322500_v2.0.a1 Prupe.6G322500_v2.0.a1 Prupe.6G322600_v2.0.a1
pyrus_communis	pycom04g17850 pycom12g20180
rosa_chinensis	RchiOBHm_Chr3g0455361 RchiOBHm_Chr3g0455371
rosa_laevigata	RLG00000025110 RLG00000025366
rosa_multiflora	Rmu_co8331519.1_g000001 Rmu_sc0002169.1_g000048 Rmu_sc0002169.1_g000049 Rmu_sc0002435.1_g000019 Rmu_sc0003222.1_g000014 Rmu_sc0004087.1_g000009 Rmu_sc0004343.1_g000002 Rmu_sc0004894.1_g000012 Rmu_sc0012909.1_g000009 Rmu_sc0024960.1_g000001 Rmu_sc0038181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379190 Rroxscaffold_6G00420510 Rroxscaffold_6G00424320 Rroxscaffold_6G00424330
rosa_rugosa	Rorug03G0006800 Rorug03G0006900 Rorug03G0033900 Rorug03G0287400
rosa_samantha	Rh3AG066400 Rh3AG066500 Rh3AG091800 Rh3BG068700 Rh3BG068800 Rh3CG067100 Rh3CG067200 Rh3CG095600 Rh3DG068600 Rh4BG236100
rosa_wichuraiana	Rw3G005240 Rw3G005250 Rw7G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	413
AccII	CGCG	3 cut(s)	205, 443, 542
AccIII	TCCGGA	1 cut(s)	554
AclWI	GGATC	8 cut(s)	27, 51, 252, 315, 385, 430, 471, 486
AcsI	RAATTY	2 cut(s)	386, 398
AdeI	CACNNNGTG	1 cut(s)	656
AfaI	GTAC	1 cut(s)	83
AgeI	ACCGGT	1 cut(s)	635
AgsI	TTSAA	2 cut(s)	59, 397
AjnI	CCWGG	2 cut(s)	652, 682
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AleI	CACNNNNGTG	1 cut(s)	591
AluBI	AGCT	6 cut(s)	181, 301, 629, 800, 845, 875
AluI	AGCT	6 cut(s)	181, 301, 629, 800, 845, 875
Alw21I	GWGCWC	1 cut(s)	517
Alw44I	GTGCAC	1 cut(s)	513
AlwI	GGATC	8 cut(s)	27, 51, 252, 315, 385, 430, 471, 486
Ama87I	CYCGRG	1 cut(s)	715
Aor13HI	TCCGGA	1 cut(s)	554
ApaLI	GTGCAC	1 cut(s)	513
ApeKI	GCWGC	2 cut(s)	197, 610
ApoI	RAATTY	2 cut(s)	386, 398
AsiGI	ACCGGT	1 cut(s)	635
AspLEI	GCGC	2 cut(s)	205, 445
AspS9I	GGNCC	5 cut(s)	434, 448, 545, 734, 773
AsuC2I	CCSGG	3 cut(s)	504, 716, 717
AvaI	CYCGRG	1 cut(s)	715
AvaII	GGWCC	5 cut(s)	434, 448, 545, 734, 773
BaeGI	GKGCMC	1 cut(s)	517
BaeI	ACNNNNGTAYC	2 cut(s)	703, 736
BanI	GGYRCC	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	517
BbvCI	CCTCAGC	1 cut(s)	696
BbvI	GCAGC	2 cut(s)	209, 622
BccI	CCATC	3 cut(s)	104, 260, 584
BceAI	ACGGC	3 cut(s)	71, 118, 332
BciT130I	CCWGG	2 cut(s)	654, 684
BciVI	GTATCC	2 cut(s)	596, 704
BcnI	CCSGG	3 cut(s)	504, 716, 717
BfaI	CTAG	2 cut(s)	111, 857
BfuI	GTATCC	2 cut(s)	596, 704
BisI	GCNGC	4 cut(s)	148, 198, 201, 611
BlsI	GCNGC	4 cut(s)	149, 199, 202, 612
Bme1390I	CCNGG	5 cut(s)	504, 654, 684, 716, 717
Bme18I	GGWCC	5 cut(s)	434, 448, 545, 734, 773
BmeT110I	CYCGRG	1 cut(s)	715
BmgT120I	GGNCC	5 cut(s)	434, 448, 545, 734, 773
BmiI	GGNNCC	6 cut(s)	151, 450, 546, 634, 735, 774
BmrFI	CCNGG	5 cut(s)	504, 654, 684, 716, 717
BmsI	GCATC	1 cut(s)	178
BoxI	GACNNNNGTC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	131
BplI	GAGNNNNNCTC	2 cut(s)	421, 453
BpmI	CTGGAG	1 cut(s)	861
Bpu10I	CCTNAGC	1 cut(s)	696
BpuMI	CCSGG	3 cut(s)	504, 716, 717
BsaJI	CCNNGG	3 cut(s)	540, 682, 715
BsaWI	WCCGGW	3 cut(s)	289, 554, 635
Bse118I	RCCGGY	2 cut(s)	445, 635
BseAI	TCCGGA	1 cut(s)	554
BseBI	CCWGG	2 cut(s)	654, 684
BseDI	CCNNGG	3 cut(s)	540, 682, 715
BseMII	CTCAG	1 cut(s)	710
BseRI	GAGGAG	2 cut(s)	341, 525
BseSI	GKGCMC	1 cut(s)	517
BseXI	GCAGC	2 cut(s)	209, 622
Bsh1236I	CGCG	3 cut(s)	205, 443, 542
BshNI	GGYRCC	1 cut(s)	149
BshTI	ACCGGT	1 cut(s)	635
BsiHKAI	GWGCWC	1 cut(s)	517
BsiHKCI	CYCGRG	1 cut(s)	715
BsiSI	CCGG	6 cut(s)	290, 446, 504, 555, 636, 716
BslFI	GGGAC	3 cut(s)	234, 434, 867
BsmFI	GGGAC	3 cut(s)	234, 434, 867
BsoBI	CYCGRG	1 cut(s)	715
Bsp1286I	GDGCHC	1 cut(s)	517
Bsp13I	TCCGGA	1 cut(s)	554
BspCNI	CTCAG	1 cut(s)	709
BspEI	TCCGGA	1 cut(s)	554
BspFNI	CGCG	3 cut(s)	205, 443, 542
BspLI	GGNNCC	6 cut(s)	151, 450, 546, 634, 735, 774
BspPI	GGATC	8 cut(s)	27, 51, 252, 315, 385, 430, 471, 486
BspT107I	GGYRCC	1 cut(s)	149
BsrFI	RCCGGY	2 cut(s)	445, 635
BssAI	RCCGGY	2 cut(s)	445, 635
BssECI	CCNNGG	3 cut(s)	540, 682, 715
BssNAI	GTATAC	1 cut(s)	414
Bst1107I	GTATAC	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	654, 684
Bst4CI	ACNGT	5 cut(s)	187, 337, 512, 519, 782
BstAPI	GCANNNNNTGC	2 cut(s)	521, 530
BstC8I	GCNNGC	2 cut(s)	615, 798
BstDEI	CTNAG	1 cut(s)	696
BstDSI	CCRYGG	1 cut(s)	540
BstEII	GGTNACC	3 cut(s)	677, 743, 782
BstFNI	CGCG	3 cut(s)	205, 443, 542
BstHHI	GCGC	2 cut(s)	205, 445
BstMWI	GCNNNNNNNGC	3 cut(s)	521, 530, 539
BstNI	CCWGG	2 cut(s)	654, 684
BstPAI	GACNNNNGTC	1 cut(s)	213
BstPI	GGTNACC	3 cut(s)	677, 743, 782
BstSCI	CCNGG	5 cut(s)	502, 652, 682, 714, 715
BstSLI	GKGCMC	1 cut(s)	517
BstUI	CGCG	3 cut(s)	205, 443, 542
BstV1I	GCAGC	2 cut(s)	209, 622
BstV2I	GAAGAC	1 cut(s)	131
BstX2I	RGATCY	4 cut(s)	19, 43, 377, 422
BstYI	RGATCY	4 cut(s)	19, 43, 377, 422
BstZ17I	GTATAC	1 cut(s)	414
BsuI	GTATCC	2 cut(s)	596, 704
BtgI	CCRYGG	1 cut(s)	540
BtgZI	GCGATG	2 cut(s)	238, 904
Cac8I	GCNNGC	2 cut(s)	615, 798
CfoI	GCGC	2 cut(s)	205, 445
Cfr10I	RCCGGY	2 cut(s)	445, 635
Cfr13I	GGNCC	5 cut(s)	434, 448, 545, 734, 773
Cfr42I	CCGCGG	1 cut(s)	543
Cfr9I	CCCGGG	1 cut(s)	715
CseI	GACGC	2 cut(s)	116, 203
CsiI	ACCWGGT	1 cut(s)	652
Csp6I	GTAC	1 cut(s)	82
CspAI	ACCGGT	1 cut(s)	635
CviAII	CATG	6 cut(s)	575, 803, 830, 937, 946, 955
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	696
DraIII	CACNNNGTG	1 cut(s)	656
EciI	GGCGGA	4 cut(s)	257, 636, 681, 714
Eco32I	GATATC	3 cut(s)	560, 623, 689
Eco47I	GGWCC	5 cut(s)	434, 448, 545, 734, 773
Eco88I	CYCGRG	1 cut(s)	715
Eco91I	GGTNACC	3 cut(s)	677, 743, 782
EcoO109I	RGGNCCY	1 cut(s)	545
EcoO65I	GGTNACC	3 cut(s)	677, 743, 782
EcoRII	CCWGG	2 cut(s)	652, 682
EcoRV	GATATC	3 cut(s)	560, 623, 689
FaeI	CATG	6 cut(s)	578, 806, 833, 940, 949, 958
FaqI	GGGAC	3 cut(s)	234, 434, 867
FatI	CATG	6 cut(s)	574, 802, 829, 936, 945, 954
FauI	CCCGC	6 cut(s)	507, 535, 547, 615, 756, 795
FauNDI	CATATG	1 cut(s)	739
FblI	GTMKAC	1 cut(s)	413
Fnu4HI	GCNGC	4 cut(s)	148, 198, 201, 611
Fsp4HI	GCNGC	4 cut(s)	148, 198, 201, 611
FspBI	CTAG	2 cut(s)	111, 857
GlaI	GCGC	2 cut(s)	204, 444
GluI	GCNGC	4 cut(s)	148, 198, 201, 611
GsuI	CTGGAG	1 cut(s)	861
HapII	CCGG	6 cut(s)	290, 446, 504, 555, 636, 716
HgaI	GACGC	2 cut(s)	116, 203
HhaI	GCGC	2 cut(s)	205, 445
Hin1II	CATG	6 cut(s)	578, 806, 833, 940, 949, 958
Hin6I	GCGC	2 cut(s)	203, 443
HinP1I	GCGC	2 cut(s)	203, 443
HpaII	CCGG	6 cut(s)	290, 446, 504, 555, 636, 716
Hpy166II	GTNNAC	4 cut(s)	71, 414, 515, 809
Hpy188I	TCNGA	4 cut(s)	24, 312, 916, 974
Hpy188III	TCNNGA	2 cut(s)	232, 555
Hpy8I	GTNNAC	4 cut(s)	71, 414, 515, 809
Hpy99I	CGWCG	3 cut(s)	92, 110, 191
HpyAV	CCTTC	4 cut(s)	289, 361, 462, 558
HpyCH4III	ACNGT	5 cut(s)	187, 337, 512, 519, 782
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	3 cut(s)	515, 524, 659
HpyF10VI	GCNNNNNNNGC	3 cut(s)	521, 530, 539
HpyF3I	CTNAG	1 cut(s)	696
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	6 cut(s)	578, 806, 833, 940, 949, 958
HspAI	GCGC	2 cut(s)	203, 443
Kpn2I	TCCGGA	1 cut(s)	554
KspI	CCGCGG	1 cut(s)	543
LmnI	GCTCC	4 cut(s)	298, 538, 842, 872
Lsp1109I	GCAGC	2 cut(s)	209, 622
LweI	GCATC	1 cut(s)	178
MabI	ACCWGGT	1 cut(s)	652
MaeI	CTAG	2 cut(s)	111, 857
MaeII	ACGT	1 cut(s)	54
MboII	GAAGA	4 cut(s)	136, 417, 543, 835
MfeI	CAATTG	1 cut(s)	59
MflI	RGATCY	4 cut(s)	19, 43, 377, 422
MhlI	GDGCHC	1 cut(s)	517
MluCI	AATT	3 cut(s)	59, 386, 398
MnlI	CCTC	8 cut(s)	34, 271, 319, 345, 447, 546, 668, 705
MroI	TCCGGA	1 cut(s)	554
MslI	CAYNNNNRTG	1 cut(s)	591
MspA1I	CMGCKG	3 cut(s)	200, 542, 629
MspI	CCGG	6 cut(s)	290, 446, 504, 555, 636, 716
MspR9I	CCNGG	5 cut(s)	504, 654, 684, 716, 717
MunI	CAATTG	1 cut(s)	59
MvaI	CCWGG	2 cut(s)	654, 684
MvnI	CGCG	3 cut(s)	205, 443, 542
MwoI	GCNNNNNNNGC	3 cut(s)	521, 530, 539
NciI	CCSGG	3 cut(s)	504, 716, 717
NdeI	CATATG	1 cut(s)	739
NlaIII	CATG	6 cut(s)	578, 806, 833, 940, 949, 958
NlaIV	GGNNCC	6 cut(s)	151, 450, 546, 634, 735, 774
NmuCI	GTSAC	6 cut(s)	206, 320, 487, 932, 941, 950
OliI	CACNNNNGTG	1 cut(s)	591
PcsI	WCGNNNNNNNCGW	1 cut(s)	585
PinAI	ACCGGT	1 cut(s)	635
PkrI	GCNGC	4 cut(s)	149, 199, 202, 612
PpuMI	RGGWCCY	1 cut(s)	545
PshAI	GACNNNNGTC	1 cut(s)	213
Psp5II	RGGWCCY	1 cut(s)	545
Psp6I	CCWGG	2 cut(s)	652, 682
PspEI	GGTNACC	3 cut(s)	677, 743, 782
PspGI	CCWGG	2 cut(s)	652, 682
PspN4I	GGNNCC	6 cut(s)	151, 450, 546, 634, 735, 774
PspPI	GGNCC	5 cut(s)	434, 448, 545, 734, 773
PspPPI	RGGWCCY	1 cut(s)	545
PsuI	RGATCY	4 cut(s)	19, 43, 377, 422
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	591
SacII	CCGCGG	1 cut(s)	543
SatI	GCNGC	4 cut(s)	148, 198, 201, 611
Sau96I	GGNCC	5 cut(s)	434, 448, 545, 734, 773
ScrFI	CCNGG	5 cut(s)	504, 654, 684, 716, 717
SduI	GDGCHC	1 cut(s)	517
SexAI	ACCWGGT	1 cut(s)	652
SfaNI	GCATC	1 cut(s)	178
Sfr303I	CCGCGG	1 cut(s)	543
SgrBI	CCGCGG	1 cut(s)	543
SinI	GGWCC	5 cut(s)	434, 448, 545, 734, 773
SmaI	CCCGGG	1 cut(s)	717
SmiMI	CAYNNNNRTG	1 cut(s)	591
Sse9I	AATT	3 cut(s)	59, 386, 398
SspMI	CTAG	2 cut(s)	111, 857
StyD4I	CCNGG	5 cut(s)	502, 652, 682, 714, 715
TaaI	ACNGT	5 cut(s)	187, 337, 512, 519, 782
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	4 cut(s)	189, 231, 428, 966
TasI	AATT	3 cut(s)	59, 386, 398
TauI	GCSGC	2 cut(s)	150, 203
TseFI	GTSAC	6 cut(s)	206, 320, 487, 932, 941, 950
TseI	GCWGC	2 cut(s)	197, 610
Tsp45I	GTSAC	6 cut(s)	206, 320, 487, 932, 941, 950
TspDTI	ATGAA	1 cut(s)	191
TspMI	CCCGGG	1 cut(s)	715
VneI	GTGCAC	1 cut(s)	513
VpaK11BI	GGWCC	5 cut(s)	434, 448, 545, 734, 773
XapI	RAATTY	2 cut(s)	386, 398
XmaI	CCCGGG	1 cut(s)	715
XmiI	GTMKAC	1 cut(s)	413
XspI	CTAG	2 cut(s)	111, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.