Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004894.1

Orthogroup ID

OG0001785

Physical Location & Seq

Genomic Coordinates Forward (+)

58110 .. 58529

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004894.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atggattgcagacctttggaaataacggtgttcggcgtaaatgacatcaagggcgtgaacatgttctctaagatggacgtctatgtcgtcgtctccgtctccggtaacggcgtcaggaagcagaagctccgcacccccatccacaaagacgccggcaccaaccccaaatggaaccacacccttaagttcactcttgacaactccgccctcgaccgcctccaaatcaaaatcaagctcatctgtgatcgcaccttcggcgagaccaagatcggaaaggccttcgttccggtcaaggacctcctacaaaacgagatgaatgacaagcacgtgacctatccggtcatcactgccaaggggagacccaaaggcaacgagatgagaacgacgacgatgacagagccacagatgatggaggcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

Protein Analysis

139

Amino Acids

15.72

Weight (kDa)

9.55

Isoelectric Point (pI)

22.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09070
fragaria_vesca	FvH4_6g06320 FvH4_6g06320 FvH4_6g06321
malus_domestica	MD04G1202300.v1.1 MD12G1216300.v1.1
prunus_persica	Prupe.6G322500_v2.0.a1 Prupe.6G322500_v2.0.a1 Prupe.6G322600_v2.0.a1
pyrus_communis	pycom04g17850 pycom12g20180
rosa_chinensis	RchiOBHm_Chr3g0455361 RchiOBHm_Chr3g0455371
rosa_laevigata	RLG00000025110 RLG00000025366
rosa_multiflora	Rmu_co8331519.1_g000001 Rmu_sc0002169.1_g000048 Rmu_sc0002169.1_g000049 Rmu_sc0002435.1_g000019 Rmu_sc0003222.1_g000014 Rmu_sc0004087.1_g000009 Rmu_sc0004343.1_g000002 Rmu_sc0004894.1_g000012 Rmu_sc0012909.1_g000009 Rmu_sc0024960.1_g000001 Rmu_sc0038181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379190 Rroxscaffold_6G00420510 Rroxscaffold_6G00424320 Rroxscaffold_6G00424330
rosa_rugosa	Rorug03G0006800 Rorug03G0006900 Rorug03G0033900 Rorug03G0287400
rosa_samantha	Rh3AG066400 Rh3AG066500 Rh3AG091800 Rh3BG068700 Rh3BG068800 Rh3CG067100 Rh3CG067200 Rh3CG095600 Rh3DG068600 Rh4BG236100
rosa_wichuraiana	Rw3G005240 Rw3G005250 Rw7G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AatII	GACGTC	1 cut(s)	81
AccB1I	GGYRCC	1 cut(s)	155
AciI	CCGC	3 cut(s)	130, 204, 214
AcvI	CACGTG	1 cut(s)	328
AcyI	GRCGYC	3 cut(s)	78, 111, 150
AflII	CTTAAG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	60
AluBI	AGCT	2 cut(s)	127, 235
AluI	AGCT	2 cut(s)	127, 235
Alw26I	GTCTC	4 cut(s)	97, 103, 254, 352
AoxI	GGCC	2 cut(s)	276, 414
Asp700I	GAANNNNTTC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	155
BbrPI	CACGTG	1 cut(s)	328
BccI	CCATC	3 cut(s)	67, 146, 403
BceAI	ACGGC	1 cut(s)	124
BcoDI	GTCTC	4 cut(s)	97, 103, 254, 352
BfaI	CTAG	1 cut(s)	418
BfrI	CTTAAG	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	157, 173
BsaAI	YACGTR	1 cut(s)	328
BsaHI	GRCGYC	3 cut(s)	78, 111, 150
BsaI	GGTCTC	2 cut(s)	254, 352
BsaJI	CCNNGG	1 cut(s)	351
BsaWI	WCCGGW	3 cut(s)	101, 286, 337
Bse118I	RCCGGY	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	2 cut(s)	278, 416
BshNI	GGYRCC	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	214
BsiSI	CCGG	4 cut(s)	102, 153, 287, 338
BsmAI	GTCTC	4 cut(s)	97, 103, 254, 352
BsmBI	CGTCTC	2 cut(s)	97, 103
BsnI	GGCC	2 cut(s)	278, 416
Bso31I	GGTCTC	2 cut(s)	254, 352
Bsp143I	GATC	2 cut(s)	244, 267
BspACI	CCGC	3 cut(s)	130, 204, 214
BspANI	GGCC	2 cut(s)	278, 416
BspLI	GGNNCC	2 cut(s)	157, 173
BspT107I	GGYRCC	1 cut(s)	155
BspTI	CTTAAG	1 cut(s)	182
BspTNI	GGTCTC	2 cut(s)	254, 352
BsrFI	RCCGGY	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	2 cut(s)	244, 267
BssNI	GRCGYC	3 cut(s)	78, 111, 150
BssT1I	CCWWGG	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	28
BstACI	GRCGYC	3 cut(s)	78, 111, 150
BstAFI	CTTAAG	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	328
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	138
BstKTI	GATC	2 cut(s)	247, 270
BstMAI	GTCTC	4 cut(s)	97, 103, 254, 352
BstMBI	GATC	2 cut(s)	244, 267
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstNSI	RCATGY	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	278, 416
BtsCI	GGATG	1 cut(s)	138
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	295
CseI	GACGC	2 cut(s)	100, 158
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	5 cut(s)	127, 235, 278, 400, 416
CviKI_1	RGCY	5 cut(s)	127, 235, 278, 400, 416
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	2 cut(s)	246, 269
DpnII	GATC	2 cut(s)	244, 267
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
EciI	GGCGGA	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	351
Eco147I	AGGCCT	2 cut(s)	278, 416
Eco31I	GGTCTC	2 cut(s)	254, 352
Eco47I	GGWCC	1 cut(s)	295
Eco72I	CACGTG	1 cut(s)	328
EcoO109I	RGGNCCY	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
Esp3I	CGTCTC	2 cut(s)	97, 103
FaeI	CATG	1 cut(s)	64
FaiI	YATR	2 cut(s)	62, 84
FatI	CATG	1 cut(s)	60
FokI	GGATG	1 cut(s)	125
FspBI	CTAG	1 cut(s)	418
HaeIII	GGCC	2 cut(s)	278, 416
HapII	CCGG	4 cut(s)	102, 153, 287, 338
HgaI	GACGC	2 cut(s)	100, 158
Hin1I	GRCGYC	3 cut(s)	78, 111, 150
Hin1II	CATG	1 cut(s)	64
HpaII	CCGG	4 cut(s)	102, 153, 287, 338
Hpy166II	GTNNAC	2 cut(s)	58, 189
Hpy188I	TCNGA	1 cut(s)	272
Hpy188III	TCNNGA	2 cut(s)	115, 194
Hpy8I	GTNNAC	2 cut(s)	58, 189
Hpy99I	CGWCG	3 cut(s)	92, 388, 391
HpyAV	CCTTC	2 cut(s)	262, 289
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	2 cut(s)	78, 327
HpyCH4V	TGCA	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	2 cut(s)	78, 327
Hsp92I	GRCGYC	3 cut(s)	78, 111, 150
Hsp92II	CATG	1 cut(s)	64
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	244, 267
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	5 cut(s)	100, 115, 166, 300, 351
MaeI	CTAG	1 cut(s)	418
MaeII	ACGT	2 cut(s)	78, 327
MaeIII	GTNAC	2 cut(s)	104, 328
MalI	GATC	2 cut(s)	246, 269
MboI	GATC	2 cut(s)	244, 267
MnlI	CCTC	4 cut(s)	218, 227, 308, 406
MroNI	GCCGGC	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	62
MseI	TTAA	1 cut(s)	183
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	4 cut(s)	102, 153, 287, 338
MwoI	GCNNNNNNNGC	1 cut(s)	255
NaeI	GCCGGC	1 cut(s)	154
NdeII	GATC	2 cut(s)	244, 267
NgoMIV	GCCGGC	1 cut(s)	152
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	2 cut(s)	157, 173
NmuCI	GTSAC	1 cut(s)	328
NspI	RCATGY	1 cut(s)	64
PceI	AGGCCT	2 cut(s)	278, 416
PciI	ACATGT	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 93
PdiI	GCCGGC	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	62
PmaCI	CACGTG	1 cut(s)	328
PmlI	CACGTG	1 cut(s)	328
Ppu21I	YACGTR	1 cut(s)	328
PpuMI	RGGWCCY	1 cut(s)	295
PscI	ACATGT	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	295
PspCI	CACGTG	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	157, 173
PspPI	GGNCC	1 cut(s)	295
PspPPI	RGGWCCY	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	183
Sau3AI	GATC	2 cut(s)	244, 267
Sau96I	GGNCC	1 cut(s)	295
SetI	ASST	8 cut(s)	16, 81, 129, 237, 254, 300, 330, 335
SinI	GGWCC	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SseBI	AGGCCT	2 cut(s)	278, 416
SsiI	CCGC	3 cut(s)	130, 204, 214
SspMI	CTAG	1 cut(s)	418
StuI	AGGCCT	2 cut(s)	278, 416
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	2 cut(s)	81, 330
TaqI	TCGA	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	328
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	1 cut(s)	329
TspGWI	ACGGA	1 cut(s)	85
TspRI	CASTG	1 cut(s)	352
Vha464I	CTTAAG	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	295
XceI	RCATGY	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	62
XspI	CTAG	1 cut(s)	418
ZraI	GACGTC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.