Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001785

Physical Location & Seq

Genomic Coordinates Reverse (-)

45496896 .. 45497951

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGAACAACCCCCCTTCACTTTCACGCTTGATGACGCCACTCTTAACCAGAACCGTCTTACGCTTAAGATCAAGCTCATCTCCGACCGAACCCTCAAGGAAACCAAGATCGGAAAGGCCGTCATTCCGGTGAGTCAGCTGCTAGAAAATAGTGGCAAGGACAACCTCCCGTGCGTAACCTACACGGTTTTAAGGCCCAAGGAGAAACCCCAAGGCAACGTCACTTTTGTTTACAACTTCGGCGAGAAATTTTGGGCTCCTCTTCCCTTTCATCCCAAGGCCCAAAAGGAGATTCTCGAGCAGCCAAGGAGGCAAGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

Protein Analysis

107

Amino Acids

12.25

Weight (kDa)

9.52

Isoelectric Point (pI)

31.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09070
fragaria_vesca	FvH4_6g06320 FvH4_6g06320 FvH4_6g06321
malus_domestica	MD04G1202300.v1.1 MD12G1216300.v1.1
prunus_persica	Prupe.6G322500_v2.0.a1 Prupe.6G322500_v2.0.a1 Prupe.6G322600_v2.0.a1
pyrus_communis	pycom04g17850 pycom12g20180
rosa_chinensis	RchiOBHm_Chr3g0455361 RchiOBHm_Chr3g0455371
rosa_laevigata	RLG00000025110 RLG00000025366
rosa_multiflora	Rmu_co8331519.1_g000001 Rmu_sc0002169.1_g000048 Rmu_sc0002169.1_g000049 Rmu_sc0002435.1_g000019 Rmu_sc0003222.1_g000014 Rmu_sc0004087.1_g000009 Rmu_sc0004343.1_g000002 Rmu_sc0004894.1_g000012 Rmu_sc0012909.1_g000009 Rmu_sc0024960.1_g000001 Rmu_sc0038181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379190 Rroxscaffold_6G00420510 Rroxscaffold_6G00424320 Rroxscaffold_6G00424330
rosa_rugosa	Rorug03G0006800 Rorug03G0006900 Rorug03G0033900 Rorug03G0287400
rosa_samantha	Rh3AG066400 Rh3AG066500 Rh3AG091800 Rh3BG068700 Rh3BG068800 Rh3CG067100 Rh3CG067200 Rh3CG095600 Rh3DG068600 Rh4BG236100
rosa_wichuraiana	Rw3G005240 Rw3G005250 Rw7G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	248
AcyI	GRCGYC	1 cut(s)	36
AflII	CTTAAG	1 cut(s)	65
AjuI	GAANNNNNNNTTGG	2 cut(s)	276, 308
AluBI	AGCT	2 cut(s)	76, 139
AluI	AGCT	2 cut(s)	76, 139
Ama87I	CYCGRG	1 cut(s)	296
AoxI	GGCC	3 cut(s)	117, 194, 279
ApeKI	GCWGC	2 cut(s)	139, 301
ApoI	RAATTY	1 cut(s)	248
AspS9I	GGNCC	2 cut(s)	195, 280
AsuHPI	GGTGA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	259
BbvI	GCAGC	2 cut(s)	126, 313
BceAI	ACGGC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	143
BfrI	CTTAAG	1 cut(s)	65
BglI	GCCNNNNNGGC	1 cut(s)	310
BisI	GCNGC	2 cut(s)	140, 302
BlsI	GCNGC	2 cut(s)	141, 303
BmeT110I	CYCGRG	1 cut(s)	296
BmgT120I	GGNCC	2 cut(s)	195, 280
BmiI	GGNNCC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	80
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	4 cut(s)	198, 211, 276, 305
BsaWI	WCCGGW	1 cut(s)	127
BseDI	CCNNGG	4 cut(s)	198, 211, 276, 305
BseGI	GGATG	1 cut(s)	271
BseRI	GAGGAG	1 cut(s)	249
BseXI	GCAGC	2 cut(s)	126, 313
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	3 cut(s)	119, 196, 281
BsiEI	CGRYCG	1 cut(s)	88
BsiHKCI	CYCGRG	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	128
BsnI	GGCC	3 cut(s)	119, 196, 281
BsoBI	CYCGRG	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp143I	GATC	2 cut(s)	69, 108
BspANI	GGCC	3 cut(s)	119, 196, 281
BspLI	GGNNCC	1 cut(s)	258
BspTI	CTTAAG	1 cut(s)	65
BssECI	CCNNGG	4 cut(s)	198, 211, 276, 305
BssMI	GATC	2 cut(s)	69, 108
BssNI	GRCGYC	1 cut(s)	36
BssT1I	CCWWGG	4 cut(s)	198, 211, 276, 305
Bst4CI	ACNGT	2 cut(s)	56, 187
Bst6I	CTCTTC	1 cut(s)	267
BstACI	GRCGYC	1 cut(s)	36
BstAFI	CTTAAG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	2 cut(s)	72, 111
BstMBI	GATC	2 cut(s)	69, 108
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstV1I	GCAGC	2 cut(s)	126, 313
BsuRI	GGCC	3 cut(s)	119, 196, 281
BtsCI	GGATG	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	195, 280
CseI	GACGC	1 cut(s)	44
CviJI	RGCY	7 cut(s)	76, 119, 139, 196, 257, 281, 304
CviKI_1	RGCY	7 cut(s)	76, 119, 139, 196, 257, 281, 304
DpnI	GATC	2 cut(s)	71, 110
DpnII	GATC	2 cut(s)	69, 108
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco130I	CCWWGG	4 cut(s)	198, 211, 276, 305
Eco24I	GRGCYC	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	296
EcoT14I	CCWWGG	4 cut(s)	198, 211, 276, 305
EcoT38I	GRGCYC	1 cut(s)	259
ErhI	CCWWGG	4 cut(s)	198, 211, 276, 305
Fnu4HI	GCNGC	2 cut(s)	140, 302
FokI	GGATG	1 cut(s)	258
FriOI	GRGCYC	1 cut(s)	259
Fsp4HI	GCNGC	2 cut(s)	140, 302
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	2 cut(s)	140, 302
HaeIII	GGCC	3 cut(s)	119, 196, 281
HapII	CCGG	1 cut(s)	128
HgaI	GACGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	36
HinfI	GANTC	2 cut(s)	133, 292
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	85, 113
Hpy188III	TCNNGA	1 cut(s)	296
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	2 cut(s)	56, 187
HpyCH4IV	ACGT	1 cut(s)	219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpySE526I	ACGT	1 cut(s)	219
Hsp92I	GRCGYC	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	69, 108
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	2 cut(s)	62, 141
Lsp1109I	GCAGC	2 cut(s)	126, 313
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	2 cut(s)	175, 220
MalI	GATC	2 cut(s)	71, 110
MboI	GATC	2 cut(s)	69, 108
MboII	GAAGA	1 cut(s)	254
MhlI	GDGCHC	1 cut(s)	259
MluCI	AATT	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	4 cut(s)	104, 176, 270, 303
MseI	TTAA	3 cut(s)	45, 66, 191
MslI	CAYNNNNRTG	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	139
MspCI	CTTAAG	1 cut(s)	65
MspI	CCGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	310
NdeII	GATC	2 cut(s)	69, 108
NlaIV	GGNNCC	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	220
PaeR7I	CTCGAG	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	141, 303
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	2 cut(s)	195, 280
PvuII	CAGCTG	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	128
SaqAI	TTAA	3 cut(s)	45, 66, 191
SatI	GCNGC	2 cut(s)	140, 302
Sau3AI	GATC	2 cut(s)	69, 108
Sau96I	GGNCC	2 cut(s)	195, 280
SchI	GAGTC	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	259
SetI	ASST	5 cut(s)	78, 141, 168, 182, 222
Sfr274I	CTCGAG	1 cut(s)	296
SlaI	CTCGAG	1 cut(s)	296
SmiMI	CAYNNNNRTG	1 cut(s)	128
SmlI	CTYRAG	3 cut(s)	65, 95, 296
SmoI	CTYRAG	3 cut(s)	65, 95, 296
Sse9I	AATT	1 cut(s)	248
SspMI	CTAG	1 cut(s)	143
StyI	CCWWGG	4 cut(s)	198, 211, 276, 305
TaaI	ACNGT	2 cut(s)	56, 187
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	1 cut(s)	297
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	3 cut(s)	45, 66, 191
Tru9I	TTAA	3 cut(s)	45, 66, 191
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	2 cut(s)	139, 301
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	260
Vha464I	CTTAAG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	248
XhoI	CTCGAG	1 cut(s)	296
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.