Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001785

Physical Location & Seq

Genomic Coordinates Forward (+)

4639764 .. 4641695

Gene Structure 1932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG066400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGATTGCAGGCCTTTGGAAATAACGGTGTTCGGCGCCAATGACATCAAGGACGTCAACATGTTCTCCAAGATGGACGTCTACGCCGCCGTCTCCGTCACCGGTAACGGCTTCAGGAAGCAGAAGCTCCGCACCCCCGTCCACAAAGACGCCGGCACCAACCCCAAATGGAACCACACCCTCAAGTTCACCCTCGACAACTCCGCCCTCGACCGCCTCAAAATCAAAATCAAGCTCATCTCTGACCGCACCTTCGGCGAGACCAAGATCGGAAAGGCCGTGGTTCCGGTCAAGGACCTCCTGCAAAACGAGAAGAACGACAAGCACGTGACCTACCCGGTGGTGACTGCCAAGGGGAGACCCAAAGGCAGCGTCAGTTTCGGGTACAAGTTCGGCGAGAAATTCACGGCGCCTCTTCCGGTCCAGCATGAGGCCTACAAGAAGGCCCACGAGCCCGTTGTGGCGTACCCGGCGGGTCATGCCGGGTCGAGCTCCGCTTACCCGCCACCCGGCGTGGCCCACCCGGTCTATCATCCTTACCCGCCTCAGCCACAACCGGGTTACGGGTACCCGCCGCAGCAGCAACCGGGTTATGGGTACCCTCCGCAGCAGCAACCGGGCTACGGGTACGCGCCGCAGCAGCAGGCCGGGTACGGGCACCCGCCGGTAGTGCAGCCGGGTTATGGGTACGTGCAGCAGCCGCAGAAGCCCAAAAGAGGAGGAGGGAACATGGCACTTGGGTTGGGAGCGGGACTGTTGGGTGGGTTGCTGATCGGAGATATGGTTTCCGATGTCGGTGAGATGGCGGCGTATGATGCTGGTTATGATGATGCTTTGGGTGGTGGGTTTGATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

Protein Analysis

285

Amino Acids

30.76

Weight (kDa)

9.17

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	6 - 108	7e-16	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09070
fragaria_vesca	FvH4_6g06320 FvH4_6g06320 FvH4_6g06321
malus_domestica	MD04G1202300.v1.1 MD12G1216300.v1.1
prunus_persica	Prupe.6G322500_v2.0.a1 Prupe.6G322500_v2.0.a1 Prupe.6G322600_v2.0.a1
pyrus_communis	pycom04g17850 pycom12g20180
rosa_chinensis	RchiOBHm_Chr3g0455361 RchiOBHm_Chr3g0455371
rosa_laevigata	RLG00000025110 RLG00000025366
rosa_multiflora	Rmu_co8331519.1_g000001 Rmu_sc0002169.1_g000048 Rmu_sc0002169.1_g000049 Rmu_sc0002435.1_g000019 Rmu_sc0003222.1_g000014 Rmu_sc0004087.1_g000009 Rmu_sc0004343.1_g000002 Rmu_sc0004894.1_g000012 Rmu_sc0012909.1_g000009 Rmu_sc0024960.1_g000001 Rmu_sc0038181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379190 Rroxscaffold_6G00420510 Rroxscaffold_6G00424320 Rroxscaffold_6G00424330
rosa_rugosa	Rorug03G0006800 Rorug03G0006900 Rorug03G0033900 Rorug03G0287400
rosa_samantha	Rh3AG066400 Rh3AG066500 Rh3AG091800 Rh3BG068700 Rh3BG068800 Rh3CG067100 Rh3CG067200 Rh3CG095600 Rh3DG068600 Rh4BG236100
rosa_wichuraiana	Rw3G005240 Rw3G005250 Rw7G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	57, 81
Acc65I	GGTACC	2 cut(s)	567, 597
AccB1I	GGYRCC	6 cut(s)	35, 155, 409, 567, 597, 657
AccBSI	CCGCTC	1 cut(s)	749
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	1 cut(s)	632
AcsI	RAATTY	1 cut(s)	401
AcuI	CTGAAG	1 cut(s)	97
AcvI	CACGTG	1 cut(s)	328
AcyI	GRCGYC	5 cut(s)	36, 54, 78, 150, 410
AfaI	GTAC	7 cut(s)	386, 467, 569, 599, 629, 653, 689
AfiI	CCNNNNNNNGG	9 cut(s)	430, 509, 557, 563, 593, 623, 654, 683, 716
AflIII	ACRYGT	1 cut(s)	60
AgeI	ACCGGT	1 cut(s)	101
AluBI	AGCT	3 cut(s)	127, 235, 492
AluI	AGCT	3 cut(s)	127, 235, 492
Alw21I	GWGCWC	1 cut(s)	494
Alw26I	GTCTC	3 cut(s)	97, 254, 352
AoxI	GGCC	6 cut(s)	11, 276, 432, 444, 516, 645
ApoI	RAATTY	1 cut(s)	401
ArsI	GACNNNNNNTTYG	4 cut(s)	236, 268, 357, 389
AsiGI	ACCGGT	1 cut(s)	101
Asp718I	GGTACC	2 cut(s)	567, 597
AspLEI	GCGC	3 cut(s)	38, 412, 634
AspS9I	GGNCC	4 cut(s)	295, 421, 445, 517
AsuHPI	GGTGA	4 cut(s)	91, 181, 355, 809
AvaII	GGWCC	2 cut(s)	295, 421
BaeGI	GKGCMC	1 cut(s)	660
BanI	GGYRCC	6 cut(s)	35, 155, 409, 567, 597, 657
BanII	GRGCYC	2 cut(s)	456, 494
BauI	CACGAG	1 cut(s)	449
BbrPI	CACGTG	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	494
BbvCI	CCTCAGC	1 cut(s)	546
BccI	CCATC	2 cut(s)	67, 796
BceAI	ACGGC	4 cut(s)	74, 124, 263, 423
BcoDI	GTCTC	3 cut(s)	97, 254, 352
BfaI	CTAG	1 cut(s)	856
BfoI	RGCGCY	2 cut(s)	39, 413
Bme18I	GGWCC	2 cut(s)	295, 421
BmgT120I	GGNCC	4 cut(s)	295, 421, 445, 517
BmiI	GGNNCC	8 cut(s)	37, 157, 173, 285, 411, 569, 599, 659
BmsI	GCATC	2 cut(s)	805, 820
Bpu10I	CCTNAGC	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	167
BsaAI	YACGTR	2 cut(s)	328, 691
BsaHI	GRCGYC	5 cut(s)	36, 54, 78, 150, 410
BsaI	GGTCTC	2 cut(s)	254, 352
BsaJI	CCNNGG	2 cut(s)	279, 351
BsaWI	WCCGGW	3 cut(s)	101, 286, 418
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 80, 768, 798
Bsc4I	CCNNNNNNNGG	9 cut(s)	430, 509, 557, 563, 593, 623, 654, 683, 716
Bse118I	RCCGGY	3 cut(s)	101, 152, 664
BseDI	CCNNGG	2 cut(s)	279, 351
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	9 cut(s)	430, 509, 557, 563, 593, 623, 654, 683, 716
BseMII	CTCAG	1 cut(s)	560
BseRI	GAGGAG	2 cut(s)	732, 735
BseSI	GKGCMC	1 cut(s)	660
BsgI	GTGCAG	2 cut(s)	692, 713
Bsh1236I	CGCG	1 cut(s)	632
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	6 cut(s)	13, 278, 434, 446, 518, 647
BshNI	GGYRCC	6 cut(s)	35, 155, 409, 567, 597, 657
BshTI	ACCGGT	1 cut(s)	101
BsiEI	CGRYCG	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	494
BslFI	GGGAC	1 cut(s)	765
BslI	CCNNNNNNNGG	9 cut(s)	430, 509, 557, 563, 593, 623, 654, 683, 716
BsmAI	GTCTC	3 cut(s)	97, 254, 352
BsmBI	CGTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	765
BsnI	GGCC	6 cut(s)	13, 278, 434, 446, 518, 647
Bso31I	GGTCTC	2 cut(s)	254, 352
Bsp1286I	GDGCHC	3 cut(s)	456, 494, 660
Bsp143I	GATC	2 cut(s)	267, 771
BspANI	GGCC	6 cut(s)	13, 278, 434, 446, 518, 647
BspCNI	CTCAG	1 cut(s)	559
BspFNI	CGCG	1 cut(s)	632
BspLI	GGNNCC	8 cut(s)	37, 157, 173, 285, 411, 569, 599, 659
BspT107I	GGYRCC	6 cut(s)	35, 155, 409, 567, 597, 657
BspTNI	GGTCTC	2 cut(s)	254, 352
BsrBI	CCGCTC	1 cut(s)	749
BsrFI	RCCGGY	3 cut(s)	101, 152, 664
BssAI	RCCGGY	3 cut(s)	101, 152, 664
BssECI	CCNNGG	2 cut(s)	279, 351
BssMI	GATC	2 cut(s)	267, 771
BssNI	GRCGYC	5 cut(s)	36, 54, 78, 150, 410
BssSI	CACGAG	1 cut(s)	449
BssT1I	CCWWGG	1 cut(s)	351
Bst2BI	CACGAG	1 cut(s)	449
Bst4CI	ACNGT	2 cut(s)	28, 756
Bst6I	CTCTTC	1 cut(s)	420
BstACI	GRCGYC	5 cut(s)	36, 54, 78, 150, 410
BstBAI	YACGTR	2 cut(s)	328, 691
BstC8I	GCNNGC	3 cut(s)	11, 154, 645
BstDEI	CTNAG	1 cut(s)	546
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	532
BstFNI	CGCG	1 cut(s)	632
BstH2I	RGCGCY	2 cut(s)	39, 413
BstHHI	GCGC	3 cut(s)	38, 412, 634
BstKTI	GATC	2 cut(s)	270, 774
BstMAI	GTCTC	3 cut(s)	97, 254, 352
BstMBI	GATC	2 cut(s)	267, 771
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	9 cut(s)	255, 470, 479, 580, 640, 670, 700, 706, 815
BstNSI	RCATGY	1 cut(s)	64
BstSLI	GKGCMC	1 cut(s)	660
BstUI	CGCG	1 cut(s)	632
BsuRI	GGCC	6 cut(s)	13, 278, 434, 446, 518, 647
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	532
Cac8I	GCNNGC	3 cut(s)	11, 154, 645
CfoI	GCGC	3 cut(s)	38, 412, 634
Cfr10I	RCCGGY	3 cut(s)	101, 152, 664
Cfr13I	GGNCC	4 cut(s)	295, 421, 445, 517
CseI	GACGC	2 cut(s)	158, 361
Csp6I	GTAC	7 cut(s)	385, 466, 568, 598, 628, 652, 688
CspAI	ACCGGT	1 cut(s)	101
CviAII	CATG	4 cut(s)	61, 428, 479, 730
CviQI	GTAC	7 cut(s)	385, 466, 568, 598, 628, 652, 688
DdeI	CTNAG	1 cut(s)	546
DinI	GGCGCC	2 cut(s)	37, 411
DpnI	GATC	2 cut(s)	269, 773
DpnII	GATC	2 cut(s)	267, 771
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
EciI	GGCGGA	1 cut(s)	193
Ecl136II	GAGCTC	1 cut(s)	492
Eco130I	CCWWGG	1 cut(s)	351
Eco147I	AGGCCT	2 cut(s)	13, 434
Eco24I	GRGCYC	2 cut(s)	456, 494
Eco31I	GGTCTC	2 cut(s)	254, 352
Eco47I	GGWCC	2 cut(s)	295, 421
Eco53kI	GAGCTC	1 cut(s)	492
Eco57I	CTGAAG	1 cut(s)	97
Eco72I	CACGTG	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	492
EcoO109I	RGGNCCY	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	351
EcoT38I	GRGCYC	2 cut(s)	456, 494
EgeI	GGCGCC	2 cut(s)	37, 411
EheI	GGCGCC	2 cut(s)	37, 411
ErhI	CCWWGG	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	4 cut(s)	64, 431, 482, 733
FaiI	YATR	9 cut(s)	62, 429, 480, 594, 684, 731, 782, 813, 825
FaqI	GGGAC	1 cut(s)	765
FatI	CATG	4 cut(s)	60, 427, 478, 729
FauI	CCCGC	6 cut(s)	466, 510, 549, 579, 669, 742
FblI	GTMKAC	1 cut(s)	81
FokI	GGATG	1 cut(s)	519
FriOI	GRGCYC	2 cut(s)	456, 494
FspBI	CTAG	1 cut(s)	856
GlaI	GCGC	3 cut(s)	37, 411, 633
HaeII	RGCGCY	2 cut(s)	39, 413
HaeIII	GGCC	6 cut(s)	13, 278, 434, 446, 518, 647
HgaI	GACGC	2 cut(s)	158, 361
HhaI	GCGC	3 cut(s)	38, 412, 634
Hin1I	GRCGYC	5 cut(s)	36, 54, 78, 150, 410
Hin1II	CATG	4 cut(s)	64, 431, 482, 733
Hin6I	GCGC	3 cut(s)	36, 410, 632
HinP1I	GCGC	3 cut(s)	36, 410, 632
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HphI	GGTGA	4 cut(s)	91, 181, 355, 809
Hpy166II	GTNNAC	4 cut(s)	58, 82, 142, 189
Hpy188I	TCNGA	4 cut(s)	244, 272, 776, 790
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	4 cut(s)	58, 82, 142, 189
HpyAV	CCTTC	2 cut(s)	262, 436
HpyCH4III	ACNGT	2 cut(s)	28, 756
HpyCH4IV	ACGT	4 cut(s)	54, 78, 327, 690
HpyCH4V	TGCA	4 cut(s)	9, 304, 673, 694
HpyF10VI	GCNNNNNNNGC	9 cut(s)	255, 470, 479, 580, 640, 670, 700, 706, 815
HpyF3I	CTNAG	1 cut(s)	546
HpySE526I	ACGT	4 cut(s)	54, 78, 327, 690
Hsp92I	GRCGYC	5 cut(s)	36, 54, 78, 150, 410
Hsp92II	CATG	4 cut(s)	64, 431, 482, 733
HspAI	GCGC	3 cut(s)	36, 410, 632
KasI	GGCGCC	2 cut(s)	35, 409
KpnI	GGTACC	2 cut(s)	571, 601
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	267, 771
LmnI	GCTCC	3 cut(s)	132, 497, 746
LweI	GCATC	2 cut(s)	805, 820
MaeI	CTAG	1 cut(s)	856
MaeII	ACGT	4 cut(s)	54, 78, 327, 690
MaeIII	GTNAC	5 cut(s)	97, 104, 328, 343, 560
MalI	GATC	2 cut(s)	269, 773
MbiI	CCGCTC	1 cut(s)	749
MboI	GATC	2 cut(s)	267, 771
MboII	GAAGA	2 cut(s)	325, 407
MhlI	GDGCHC	3 cut(s)	456, 494, 660
MluCI	AATT	1 cut(s)	401
Mly113I	GGCGCC	2 cut(s)	36, 410
MroNI	GCCGGC	1 cut(s)	152
MvnI	CGCG	1 cut(s)	632
MwoI	GCNNNNNNNGC	9 cut(s)	255, 470, 479, 580, 640, 670, 700, 706, 815
NaeI	GCCGGC	1 cut(s)	154
NarI	GGCGCC	2 cut(s)	36, 410
NdeII	GATC	2 cut(s)	267, 771
NgoMIV	GCCGGC	1 cut(s)	152
NlaIII	CATG	4 cut(s)	64, 431, 482, 733
NlaIV	GGNNCC	8 cut(s)	37, 157, 173, 285, 411, 569, 599, 659
NmuCI	GTSAC	3 cut(s)	97, 328, 343
NspI	RCATGY	1 cut(s)	64
PceI	AGGCCT	2 cut(s)	13, 434
PciI	ACATGT	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	3 cut(s)	276, 315, 324
PdiI	GCCGGC	1 cut(s)	154
PinAI	ACCGGT	1 cut(s)	101
PluTI	GGCGCC	2 cut(s)	39, 413
PmaCI	CACGTG	1 cut(s)	328
PmlI	CACGTG	1 cut(s)	328
Ppu21I	YACGTR	2 cut(s)	328, 691
PpuMI	RGGWCCY	1 cut(s)	295
PscI	ACATGT	1 cut(s)	60
Psp124BI	GAGCTC	1 cut(s)	494
Psp5II	RGGWCCY	1 cut(s)	295
PspCI	CACGTG	1 cut(s)	328
PspN4I	GGNNCC	8 cut(s)	37, 157, 173, 285, 411, 569, 599, 659
PspPI	GGNCC	4 cut(s)	295, 421, 445, 517
PspPPI	RGGWCCY	1 cut(s)	295
RsaI	GTAC	7 cut(s)	386, 467, 569, 599, 629, 653, 689
RsaNI	GTAC	7 cut(s)	385, 466, 568, 598, 628, 652, 688
SacI	GAGCTC	1 cut(s)	494
Sau3AI	GATC	2 cut(s)	267, 771
Sau96I	GGNCC	4 cut(s)	295, 421, 445, 517
SduI	GDGCHC	3 cut(s)	456, 494, 660
SfaNI	GCATC	2 cut(s)	805, 820
SfoI	GGCGCC	2 cut(s)	37, 411
SinI	GGWCC	2 cut(s)	295, 421
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	401
SseBI	AGGCCT	2 cut(s)	13, 434
SspDI	GGCGCC	2 cut(s)	35, 409
SspMI	CTAG	1 cut(s)	856
SstI	GAGCTC	1 cut(s)	494
StuI	AGGCCT	2 cut(s)	13, 434
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	2 cut(s)	28, 756
TaiI	ACGT	4 cut(s)	57, 81, 330, 693
TaqI	TCGA	3 cut(s)	195, 210, 488
TasI	AATT	1 cut(s)	401
TauI	GCSGC	5 cut(s)	89, 577, 637, 703, 809
TseFI	GTSAC	3 cut(s)	97, 328, 343
Tsp45I	GTSAC	3 cut(s)	97, 328, 343
TspGWI	ACGGA	1 cut(s)	85
VpaK11BI	GGWCC	2 cut(s)	295, 421
XapI	RAATTY	1 cut(s)	401
XceI	RCATGY	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	1 cut(s)	856
ZraI	GACGTC	2 cut(s)	55, 79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.