Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001785

Physical Location & Seq

Genomic Coordinates Reverse (-)

29402407 .. 29403240

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1216300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGATTGCAGGCCTCTGGAGGTAATCATCGACTCGGCCAATGGCCTCAAGGACGTCAACCTCTTCTCCAAGATGGACGTCTACGCCCTCGTTTCGGTCGCCGGCGACCCCCGCAACAGGAAGCAGAAGACCAAGACCCCCGTCGTCAAGGACGGCGGCACCAACCCCCAATGGAACAGCTACCCCATCAAGTTCACCGTCGACGAAGCCGCCCTCCTCCACAACCGCCTCACCCTCAACATCAAGCTCGTCTCCGAGCGCACTTTGGGAGACACCAAGATCGGCAAGGTCAAGATTCCGCTCAAGGAGCTGCTCGACAGCATGGGCGGCGGCGATGCTCAGAAGAAGCAGATGAAGCACGTCAGCTACAGCGTCCGATCGTCGAGGGGAAAGTCCAAGGGGACCATCAATTTCGGGTACAAATTTGGGGACAAGTTTTCGGTTCCGGAGCCCCAGAAGAGATCCCATGAGCCCGTGATGGCTTATCCTGTCGGACACCCCGGGTCAAGCTCCGGGTACCCACCTGCCCAAGCTTACCCATACCCGCCGCCCGGTGCGTACCCACCACCGCCTCATCAGCAACCGGGTTACGGGTACGCGCCACCGCCACAGGCCGGGAACGGATACCTGCCTCAGCCCGGGTATGGGTACCCGCCGCAGCAAGTTGTGCGGCCGCAGAAGCCTAAGAGGGGAGGAGGAAACATGGCGCTGGGTGTAGGAGCTGGGTTGCTGGGTGGATTGTTGATTGGGGATATGATTAGTGATGTGGGTGAGATGGGTGCTTACGATGGCGGGTTCGGTGGTGATGACTTCGGTGGAGGCTTTGATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

Protein Analysis

278

Amino Acids

29.62

Weight (kDa)

9.31

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	6 - 107	1.3e-13	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09070
fragaria_vesca	FvH4_6g06320 FvH4_6g06320 FvH4_6g06321
malus_domestica	MD04G1202300.v1.1 MD12G1216300.v1.1
prunus_persica	Prupe.6G322500_v2.0.a1 Prupe.6G322500_v2.0.a1 Prupe.6G322600_v2.0.a1
pyrus_communis	pycom04g17850 pycom12g20180
rosa_chinensis	RchiOBHm_Chr3g0455361 RchiOBHm_Chr3g0455371
rosa_laevigata	RLG00000025110 RLG00000025366
rosa_multiflora	Rmu_co8331519.1_g000001 Rmu_sc0002169.1_g000048 Rmu_sc0002169.1_g000049 Rmu_sc0002435.1_g000019 Rmu_sc0003222.1_g000014 Rmu_sc0004087.1_g000009 Rmu_sc0004343.1_g000002 Rmu_sc0004894.1_g000012 Rmu_sc0012909.1_g000009 Rmu_sc0024960.1_g000001 Rmu_sc0038181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379190 Rroxscaffold_6G00420510 Rroxscaffold_6G00424320 Rroxscaffold_6G00424330
rosa_rugosa	Rorug03G0006800 Rorug03G0006900 Rorug03G0033900 Rorug03G0287400
rosa_samantha	Rh3AG066400 Rh3AG066500 Rh3AG091800 Rh3BG068700 Rh3BG068800 Rh3CG067100 Rh3CG067200 Rh3CG095600 Rh3DG068600 Rh4BG236100
rosa_wichuraiana	Rw3G005240 Rw3G005250 Rw7G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	532
AatII	GACGTC	2 cut(s)	57, 81
Acc36I	ACCTGC	2 cut(s)	532, 636
Acc65I	GGTACC	2 cut(s)	516, 648
AccB1I	GGYRCC	3 cut(s)	158, 516, 648
AccBSI	CCGCTC	1 cut(s)	301
AccI	GTMKAC	2 cut(s)	81, 201
AccII	CGCG	1 cut(s)	599
AccIII	TCCGGA	1 cut(s)	445
AclWI	GGATC	1 cut(s)	456
AcoI	YGGCCR	2 cut(s)	36, 671
AcsI	RAATTY	1 cut(s)	422
AcyI	GRCGYC	2 cut(s)	54, 78
AfaI	GTAC	5 cut(s)	419, 518, 560, 596, 650
AfiI	CCNNNNNNNGG	9 cut(s)	94, 117, 551, 590, 614, 638, 644, 645, 689
AjiI	CACGTC	1 cut(s)	361
AluBI	AGCT	7 cut(s)	180, 247, 310, 366, 510, 533, 722
AluI	AGCT	7 cut(s)	180, 247, 310, 366, 510, 533, 722
Alw26I	GTCTC	2 cut(s)	256, 264
AlwI	GGATC	1 cut(s)	456
Ama87I	CYCGRG	2 cut(s)	500, 638
Aor13HI	TCCGGA	1 cut(s)	445
AoxI	GGCC	5 cut(s)	11, 36, 43, 612, 671
ApeKI	GCWGC	2 cut(s)	310, 658
ApoI	RAATTY	1 cut(s)	422
Asp718I	GGTACC	2 cut(s)	516, 648
AspLEI	GCGC	3 cut(s)	261, 601, 709
AspS9I	GGNCC	1 cut(s)	402
AsuC2I	CCSGG	8 cut(s)	501, 502, 514, 552, 585, 616, 639, 640
AsuHPI	GGTGA	4 cut(s)	187, 223, 782, 815
AvaI	CYCGRG	2 cut(s)	500, 638
AvaII	GGWCC	1 cut(s)	402
BanI	GGYRCC	3 cut(s)	158, 516, 648
BanII	GRGCYC	2 cut(s)	453, 474
BbsI	GAAGAC	1 cut(s)	134
BbvCI	CCTCAGC	1 cut(s)	633
BbvI	GCAGC	2 cut(s)	297, 670
BccI	CCATC	6 cut(s)	67, 194, 413, 472, 769, 782
BceAI	ACGGC	1 cut(s)	169
BciVI	GTATCC	1 cut(s)	617
BcnI	CCSGG	8 cut(s)	501, 502, 514, 552, 585, 616, 639, 640
BcoDI	GTCTC	2 cut(s)	256, 264
BfaI	CTAG	1 cut(s)	832
BfmI	CTRYAG	1 cut(s)	367
BfoI	RGCGCY	1 cut(s)	710
BfuAI	ACCTGC	2 cut(s)	532, 636
BfuI	GTATCC	1 cut(s)	617
Bme1390I	CCNGG	8 cut(s)	501, 502, 514, 552, 585, 616, 639, 640
Bme18I	GGWCC	1 cut(s)	402
BmeT110I	CYCGRG	2 cut(s)	500, 638
BmgBI	CACGTC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	402
BmiI	GGNNCC	6 cut(s)	160, 403, 444, 450, 518, 650
BmrFI	CCNGG	8 cut(s)	501, 502, 514, 552, 585, 616, 639, 640
BmsI	GCATC	1 cut(s)	325
BoxI	GACNNNNGTC	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	2 cut(s)	32, 287
BpuMI	CCSGG	8 cut(s)	501, 502, 514, 552, 585, 616, 639, 640
BsaHI	GRCGYC	2 cut(s)	54, 78
BsaJI	CCNNGG	4 cut(s)	396, 499, 500, 638
BsaWI	WCCGGW	1 cut(s)	445
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	9 cut(s)	94, 117, 551, 590, 614, 638, 644, 645, 689
Bse118I	RCCGGY	1 cut(s)	101
BseAI	TCCGGA	1 cut(s)	445
BseDI	CCNNGG	4 cut(s)	396, 499, 500, 638
BseLI	CCNNNNNNNGG	9 cut(s)	94, 117, 551, 590, 614, 638, 644, 645, 689
BseMII	CTCAG	2 cut(s)	353, 647
BseRI	GAGGAG	2 cut(s)	206, 708
BseX3I	CGGCCG	1 cut(s)	671
BseXI	GCAGC	2 cut(s)	297, 670
BseYI	CCCAGC	3 cut(s)	709, 722, 730
Bsh1236I	CGCG	1 cut(s)	599
Bsh1285I	CGRYCG	3 cut(s)	99, 380, 674
BshFI	GGCC	5 cut(s)	13, 38, 45, 614, 673
BshNI	GGYRCC	3 cut(s)	158, 516, 648
BsiEI	CGRYCG	3 cut(s)	99, 380, 674
BsiHKCI	CYCGRG	2 cut(s)	500, 638
BsiSI	CCGG	8 cut(s)	102, 446, 501, 513, 552, 584, 615, 639
BslFI	GGGAC	2 cut(s)	415, 443
BslI	CCNNNNNNNGG	9 cut(s)	94, 117, 551, 590, 614, 638, 644, 645, 689
BsmAI	GTCTC	2 cut(s)	256, 264
BsmBI	CGTCTC	1 cut(s)	256
BsmFI	GGGAC	2 cut(s)	415, 443
BsnI	GGCC	5 cut(s)	13, 38, 45, 614, 673
BsoBI	CYCGRG	2 cut(s)	500, 638
Bsp1286I	GDGCHC	2 cut(s)	453, 474
Bsp13I	TCCGGA	1 cut(s)	445
Bsp143I	GATC	3 cut(s)	279, 377, 461
BspANI	GGCC	5 cut(s)	13, 38, 45, 614, 673
BspCNI	CTCAG	2 cut(s)	352, 646
BspEI	TCCGGA	1 cut(s)	445
BspFNI	CGCG	1 cut(s)	599
BspLI	GGNNCC	6 cut(s)	160, 403, 444, 450, 518, 650
BspMI	ACCTGC	2 cut(s)	532, 636
BspPI	GGATC	1 cut(s)	456
BspT107I	GGYRCC	3 cut(s)	158, 516, 648
BsrBI	CCGCTC	1 cut(s)	301
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	4 cut(s)	396, 499, 500, 638
BssMI	GATC	3 cut(s)	279, 377, 461
BssNI	GRCGYC	2 cut(s)	54, 78
BssT1I	CCWWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	2 cut(s)	68, 452
BstACI	GRCGYC	2 cut(s)	54, 78
BstAPI	GCANNNNNTGC	1 cut(s)	667
BstC8I	GCNNGC	2 cut(s)	11, 103
BstDEI	CTNAG	3 cut(s)	339, 633, 684
BstFNI	CGCG	1 cut(s)	599
BstH2I	RGCGCY	1 cut(s)	710
BstHHI	GCGC	3 cut(s)	261, 601, 709
BstKTI	GATC	3 cut(s)	282, 380, 464
BstMAI	GTCTC	2 cut(s)	256, 264
BstMBI	GATC	3 cut(s)	279, 377, 461
BstMCI	CGRYCG	3 cut(s)	99, 380, 674
BstMWI	GCNNNNNNNGC	7 cut(s)	111, 307, 327, 355, 577, 667, 679
BstPAI	GACNNNNGTC	1 cut(s)	140
BstSCI	CCNGG	8 cut(s)	499, 500, 512, 550, 583, 614, 637, 638
BstSFI	CTRYAG	1 cut(s)	367
BstUI	CGCG	1 cut(s)	599
BstV1I	GCAGC	2 cut(s)	297, 670
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	461
BstZI	CGGCCG	1 cut(s)	671
BsuI	GTATCC	1 cut(s)	617
BsuRI	GGCC	5 cut(s)	13, 38, 45, 614, 673
BtgZI	GCGATG	1 cut(s)	348
BtrI	CACGTC	1 cut(s)	361
BveI	ACCTGC	2 cut(s)	532, 636
Cac8I	GCNNGC	2 cut(s)	11, 103
CciNI	GCGGCCGC	1 cut(s)	671
CfoI	GCGC	3 cut(s)	261, 601, 709
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	402
Cfr9I	CCCGGG	2 cut(s)	500, 638
CseI	GACGC	1 cut(s)	361
Csp6I	GTAC	5 cut(s)	418, 517, 559, 595, 649
CviAII	CATG	3 cut(s)	322, 467, 703
CviQI	GTAC	5 cut(s)	418, 517, 559, 595, 649
DdeI	CTNAG	3 cut(s)	339, 633, 684
DpnI	GATC	3 cut(s)	281, 379, 463
DpnII	GATC	3 cut(s)	279, 377, 461
EaeI	YGGCCR	2 cut(s)	36, 671
EagI	CGGCCG	1 cut(s)	671
Eam1104I	CTCTTC	2 cut(s)	68, 452
EarI	CTCTTC	2 cut(s)	68, 452
EclXI	CGGCCG	1 cut(s)	671
Eco130I	CCWWGG	1 cut(s)	396
Eco147I	AGGCCT	1 cut(s)	13
Eco24I	GRGCYC	2 cut(s)	453, 474
Eco47I	GGWCC	1 cut(s)	402
Eco52I	CGGCCG	1 cut(s)	671
Eco88I	CYCGRG	2 cut(s)	500, 638
EcoT14I	CCWWGG	1 cut(s)	396
EcoT38I	GRGCYC	2 cut(s)	453, 474
ErhI	CCWWGG	1 cut(s)	396
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	3 cut(s)	325, 470, 706
FaiI	YATR	6 cut(s)	323, 468, 541, 645, 704, 755
FaqI	GGGAC	2 cut(s)	415, 443
FatI	CATG	3 cut(s)	321, 466, 702
FauI	CCCGC	4 cut(s)	119, 552, 660, 785
FblI	GTMKAC	2 cut(s)	81, 201
FriOI	GRGCYC	2 cut(s)	453, 474
FspBI	CTAG	1 cut(s)	832
GlaI	GCGC	3 cut(s)	260, 600, 708
GsaI	CCCAGC	3 cut(s)	713, 726, 734
GsuI	CTGGAG	1 cut(s)	38
HaeII	RGCGCY	1 cut(s)	710
HaeIII	GGCC	5 cut(s)	13, 38, 45, 614, 673
HapII	CCGG	8 cut(s)	102, 446, 501, 513, 552, 584, 615, 639
HgaI	GACGC	1 cut(s)	361
HhaI	GCGC	3 cut(s)	261, 601, 709
Hin1I	GRCGYC	2 cut(s)	54, 78
Hin1II	CATG	3 cut(s)	325, 470, 706
Hin6I	GCGC	3 cut(s)	259, 599, 707
HinP1I	GCGC	3 cut(s)	259, 599, 707
HincII	GTYRAC	2 cut(s)	58, 202
HindII	GTYRAC	2 cut(s)	58, 202
HindIII	AAGCTT	1 cut(s)	531
HinfI	GANTC	2 cut(s)	32, 295
HpaII	CCGG	8 cut(s)	102, 446, 501, 513, 552, 584, 615, 639
HphI	GGTGA	4 cut(s)	187, 223, 782, 815
Hpy166II	GTNNAC	4 cut(s)	58, 82, 195, 202
Hpy188I	TCNGA	4 cut(s)	256, 342, 377, 494
Hpy188III	TCNNGA	3 cut(s)	17, 292, 446
Hpy8I	GTNNAC	4 cut(s)	58, 82, 195, 202
Hpy99I	CGWCG	4 cut(s)	146, 203, 206, 385
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	3 cut(s)	54, 78, 360
HpyCH4V	TGCA	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	7 cut(s)	111, 307, 327, 355, 577, 667, 679
HpyF3I	CTNAG	3 cut(s)	339, 633, 684
HpySE526I	ACGT	3 cut(s)	54, 78, 360
Hsp92I	GRCGYC	2 cut(s)	54, 78
Hsp92II	CATG	3 cut(s)	325, 470, 706
HspAI	GCGC	3 cut(s)	259, 599, 707
Kpn2I	TCCGGA	1 cut(s)	445
KpnI	GGTACC	2 cut(s)	520, 652
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	279, 377, 461
LmnI	GCTCC	4 cut(s)	307, 448, 515, 719
Lsp1109I	GCAGC	2 cut(s)	297, 670
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	1 cut(s)	832
MaeII	ACGT	3 cut(s)	54, 78, 360
MaeIII	GTNAC	1 cut(s)	587
MalI	GATC	3 cut(s)	281, 379, 463
MbiI	CCGCTC	1 cut(s)	301
MboI	GATC	3 cut(s)	279, 377, 461
MboII	GAAGA	4 cut(s)	55, 139, 355, 469
MflI	RGATCY	1 cut(s)	461
MhlI	GDGCHC	2 cut(s)	453, 474
MluCI	AATT	2 cut(s)	409, 422
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	472
MreI	CGCCGGCG	1 cut(s)	101
MroI	TCCGGA	1 cut(s)	445
MroNI	GCCGGC	1 cut(s)	101
MspI	CCGG	8 cut(s)	102, 446, 501, 513, 552, 584, 615, 639
MspR9I	CCNGG	8 cut(s)	501, 502, 514, 552, 585, 616, 639, 640
MvnI	CGCG	1 cut(s)	599
MwoI	GCNNNNNNNGC	7 cut(s)	111, 307, 327, 355, 577, 667, 679
NaeI	GCCGGC	1 cut(s)	103
NciI	CCSGG	8 cut(s)	501, 502, 514, 552, 585, 616, 639, 640
NdeII	GATC	3 cut(s)	279, 377, 461
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	3 cut(s)	325, 470, 706
NlaIV	GGNNCC	6 cut(s)	160, 403, 444, 450, 518, 650
NmeAIII	GCCGAG	1 cut(s)	14
NotI	GCGGCCGC	1 cut(s)	671
PaqCI	CACCTGC	1 cut(s)	532
PceI	AGGCCT	1 cut(s)	13
PdiI	GCCGGC	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	295
Ple19I	CGATCG	1 cut(s)	380
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PshAI	GACNNNNGTC	1 cut(s)	140
PspFI	CCCAGC	3 cut(s)	709, 722, 730
PspN4I	GGNNCC	6 cut(s)	160, 403, 444, 450, 518, 650
PspPI	GGNCC	1 cut(s)	402
PsuI	RGATCY	1 cut(s)	461
PvuI	CGATCG	1 cut(s)	380
RsaI	GTAC	5 cut(s)	419, 518, 560, 596, 650
RsaNI	GTAC	5 cut(s)	418, 517, 559, 595, 649
SalI	GTCGAC	1 cut(s)	200
Sau3AI	GATC	3 cut(s)	279, 377, 461
Sau96I	GGNCC	1 cut(s)	402
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	8 cut(s)	501, 502, 514, 552, 585, 616, 639, 640
SduI	GDGCHC	2 cut(s)	453, 474
SfaNI	GCATC	1 cut(s)	325
SfcI	CTRYAG	1 cut(s)	367
SgrAI	CRCCGGYG	1 cut(s)	101
SgrDI	CGTCGACG	1 cut(s)	200
SinI	GGWCC	1 cut(s)	402
SmaI	CCCGGG	2 cut(s)	502, 640
SmlI	CTYRAG	2 cut(s)	47, 302
SmoI	CTYRAG	2 cut(s)	47, 302
Sse9I	AATT	2 cut(s)	409, 422
SseBI	AGGCCT	1 cut(s)	13
SspMI	CTAG	1 cut(s)	832
StuI	AGGCCT	1 cut(s)	13
StyD4I	CCNGG	8 cut(s)	499, 500, 512, 550, 583, 614, 637, 638
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	3 cut(s)	57, 81, 363
TaqI	TCGA	4 cut(s)	30, 201, 315, 383
TaqII	GACCGA	1 cut(s)	85
TasI	AATT	2 cut(s)	409, 422
TauI	GCSGC	8 cut(s)	159, 212, 330, 333, 550, 658, 673, 676
TfiI	GAWTC	1 cut(s)	295
TseI	GCWGC	2 cut(s)	310, 658
TspDTI	ATGAA	1 cut(s)	368
TspGWI	ACGGA	1 cut(s)	636
TspMI	CCCGGG	2 cut(s)	500, 638
VpaK11BI	GGWCC	1 cut(s)	402
XapI	RAATTY	1 cut(s)	422
XmaI	CCCGGG	2 cut(s)	500, 638
XmiI	GTMKAC	2 cut(s)	81, 201
XspI	CTAG	1 cut(s)	832
ZraI	GACGTC	2 cut(s)	55, 79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.