Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001785

Physical Location & Seq

Genomic Coordinates Reverse (-)

486187 .. 489075

Gene Structure 2889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0006900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAAGCCACCATCCAGTCCTCAATCATCATTTTCGACAGTCAAAAACAGTTTGCGGAGAATAAATTTCAAATGCAAGAATCACAGAAGGCCATATGGAAGCGAACCATTGCCTAGAGGTATCGTCTCCCAGACTTCTAATCTAGAAATGCAGCCATTATGGAGAACGCCTAACACGCCACCTTCAAAGTTATACCAGAACAGTGCAAATTCTTCGATCAGCTTATTAGCGATGGCCGTCGGGATTAAGCAGAAAGATCTAGTCGGTAAAATGGTCAAAAAGTTTCTGTCAAGTGGTTTTGTTGTGATGCTTTTTCATTATGATGGTAACGTTGATGAGTGGAAGCAATTTCAATGGAATGATCTTGTCATTCATGTGTCTGCAGTCAATCAAACAAAATGGTGGTTCGCTAAGCGTTTCTTACATCCTGATATAGTTGCTCAATATAGTTACATTTTTCTATGGGATGAGGACCTTGGAGTTGACAATTTCAATCCTCAACGGTATGTGTCCATTGTTCGAAAGGAAGGTCTTGAAATATCACAACCGGCACTTGATTTTTCCAAGTCAGAGGTGCATCATCAAATTACTGCACGCGTGAAAGGATCAACAGTGCATAGAAGGACTTACAAGCCTAATGCCAATGGGACTGGTTGTGATGAACACAGTAAAGCTCCTCCTTGTACCGGGTGGATAGAATTGATGGCTCCAGTTTTCTCTCGAGCTGCCTGGCGTTGCGTATGGTATATGATCCAGAATAACTTGATCCATGCTTGGGGACTAGATATGCAGCTTGGCTATTGTGCACAGGGTAATCGAATGAAGAAAATTGGTGTCGTAGATGCTGAGTACATAATCCATTATGGCCGCCCTACTTTGGGAGGTCCGGACGAAAATGAGAAATTACCTCAGTCTATTGCAAAGGACCATAGAGTTGATGTGAGGAGGGAATCCTACAACGAAATGAAGATCTTCAGAAGAAAATGGGAGCGAGCTGCGAAGAACGATGAGTGTTGGATTGATCCATACCCCGTTAACAGTAGCCGGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

Protein Analysis

350

Amino Acids

40.45

Weight (kDa)

9.51

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF707	PF05212	30 - 334	1.1e-141	Protein of unknown function (DUF707)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09070
fragaria_vesca	FvH4_6g06320 FvH4_6g06320 FvH4_6g06321
malus_domestica	MD04G1202300.v1.1 MD12G1216300.v1.1
prunus_persica	Prupe.6G322500_v2.0.a1 Prupe.6G322500_v2.0.a1 Prupe.6G322600_v2.0.a1
pyrus_communis	pycom04g17850 pycom12g20180
rosa_chinensis	RchiOBHm_Chr3g0455361 RchiOBHm_Chr3g0455371
rosa_laevigata	RLG00000025110 RLG00000025366
rosa_multiflora	Rmu_co8331519.1_g000001 Rmu_sc0002169.1_g000048 Rmu_sc0002169.1_g000049 Rmu_sc0002435.1_g000019 Rmu_sc0003222.1_g000014 Rmu_sc0004087.1_g000009 Rmu_sc0004343.1_g000002 Rmu_sc0004894.1_g000012 Rmu_sc0012909.1_g000009 Rmu_sc0024960.1_g000001 Rmu_sc0038181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379190 Rroxscaffold_6G00420510 Rroxscaffold_6G00424320 Rroxscaffold_6G00424330
rosa_rugosa	Rorug03G0006800 Rorug03G0006900 Rorug03G0033900 Rorug03G0287400
rosa_samantha	Rh3AG066400 Rh3AG066500 Rh3AG091800 Rh3BG068700 Rh3BG068800 Rh3CG067100 Rh3CG067200 Rh3CG095600 Rh3DG068600 Rh4BG236100
rosa_wichuraiana	Rw3G005240 Rw3G005250 Rw7G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	597
AccIII	TCCGGA	1 cut(s)	886
AciI	CCGC	2 cut(s)	55, 868
AclI	AACGTT	1 cut(s)	330
AclWI	GGATC	4 cut(s)	613, 745, 760, 1016
AcoI	YGGCCR	2 cut(s)	234, 865
AcsI	RAATTY	2 cut(s)	64, 208
AcuI	CTGAAG	1 cut(s)	958
AfaI	GTAC	2 cut(s)	685, 851
AfiI	CCNNNNNNNGG	4 cut(s)	686, 775, 877, 878
AflIII	ACRYGT	1 cut(s)	595
AgsI	TTSAA	5 cut(s)	70, 186, 353, 493, 536
AjnI	CCWGG	1 cut(s)	728
AluBI	AGCT	5 cut(s)	222, 674, 725, 793, 995
AluI	AGCT	5 cut(s)	222, 674, 725, 793, 995
Alw21I	GWGCWC	1 cut(s)	808
Alw26I	GTCTC	1 cut(s)	130
Alw44I	GTGCAC	1 cut(s)	804
AlwI	GGATC	4 cut(s)	613, 745, 760, 1016
Ama87I	CYCGRG	1 cut(s)	720
Aor13HI	TCCGGA	1 cut(s)	886
AoxI	GGCC	3 cut(s)	89, 234, 865
ApaLI	GTGCAC	1 cut(s)	804
ApeKI	GCWGC	4 cut(s)	151, 725, 790, 995
ApoI	RAATTY	2 cut(s)	64, 208
ArsI	GACNNNNNNTTYG	2 cut(s)	514, 546
Asp700I	GAANNNNTTC	1 cut(s)	971
AspS9I	GGNCC	3 cut(s)	472, 884, 925
AsuC2I	CCSGG	1 cut(s)	688
AsuII	TTCGAA	1 cut(s)	520
AvaI	CYCGRG	1 cut(s)	720
AvaII	GGWCC	3 cut(s)	472, 884, 925
BaeGI	GKGCMC	1 cut(s)	808
Bbv12I	GWGCWC	1 cut(s)	808
BbvI	GCAGC	4 cut(s)	163, 712, 802, 982
BccI	CCATC	4 cut(s)	19, 226, 317, 697
BceAI	ACGGC	1 cut(s)	221
BcgI	CGANNNNNNTGC	2 cut(s)	195, 229
BciT130I	CCWGG	1 cut(s)	730
BcnI	CCSGG	1 cut(s)	688
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	4 cut(s)	114, 143, 260, 782
BfmI	CTRYAG	1 cut(s)	381
BglII	AGATCT	2 cut(s)	256, 969
BisI	GCNGC	5 cut(s)	152, 726, 791, 868, 996
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	5 cut(s)	153, 727, 792, 869, 997
Bme1390I	CCNGG	2 cut(s)	688, 730
Bme18I	GGWCC	3 cut(s)	472, 884, 925
BmeT110I	CYCGRG	1 cut(s)	720
BmgT120I	GGNCC	3 cut(s)	472, 884, 925
BmiI	GGNNCC	1 cut(s)	708
BmrFI	CCNGG	2 cut(s)	688, 730
BmsI	GCATC	3 cut(s)	297, 586, 832
BpmI	CTGGAG	1 cut(s)	693
Bpu1102I	GCTNAGC	1 cut(s)	411
Bpu14I	TTCGAA	1 cut(s)	520
BpuMI	CCSGG	1 cut(s)	688
BsaJI	CCNNGG	1 cut(s)	475
BsaWI	WCCGGW	1 cut(s)	886
Bsc4I	CCNNNNNNNGG	4 cut(s)	686, 775, 877, 878
Bse118I	RCCGGY	2 cut(s)	547, 1044
Bse1I	ACTGG	3 cut(s)	15, 655, 710
Bse3DI	GCAATG	1 cut(s)	107
BseAI	TCCGGA	1 cut(s)	886
BseBI	CCWGG	1 cut(s)	730
BseDI	CCNNGG	1 cut(s)	475
BseGI	GGATG	3 cut(s)	11, 424, 472
BseLI	CCNNNNNNNGG	4 cut(s)	686, 775, 877, 878
BseMI	GCAATG	1 cut(s)	107
BseMII	CTCAG	2 cut(s)	837, 923
BseNI	ACTGG	3 cut(s)	15, 655, 710
BseRI	GAGGAG	2 cut(s)	666, 958
BseSI	GKGCMC	1 cut(s)	808
BseXI	GCAGC	4 cut(s)	163, 712, 802, 982
BsgI	GTGCAG	1 cut(s)	576
Bsh1236I	CGCG	1 cut(s)	597
BshFI	GGCC	3 cut(s)	91, 236, 867
BsiHKAI	GWGCWC	1 cut(s)	808
BsiHKCI	CYCGRG	1 cut(s)	720
BsiSI	CCGG	4 cut(s)	548, 687, 887, 1045
BslFI	GGGAC	2 cut(s)	661, 792
BslI	CCNNNNNNNGG	4 cut(s)	686, 775, 877, 878
BsmAI	GTCTC	1 cut(s)	130
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	2 cut(s)	661, 792
BsnI	GGCC	3 cut(s)	91, 236, 867
BsoBI	CYCGRG	1 cut(s)	720
Bsp119I	TTCGAA	1 cut(s)	520
Bsp1286I	GDGCHC	1 cut(s)	808
Bsp13I	TCCGGA	1 cut(s)	886
Bsp143I	GATC	8 cut(s)	216, 256, 361, 605, 750, 765, 969, 1021
Bsp1720I	GCTNAGC	1 cut(s)	411
BspACI	CCGC	2 cut(s)	55, 868
BspANI	GGCC	3 cut(s)	91, 236, 867
BspCNI	CTCAG	2 cut(s)	838, 922
BspEI	TCCGGA	1 cut(s)	886
BspFNI	CGCG	1 cut(s)	597
BspLI	GGNNCC	1 cut(s)	708
BspMAI	CTGCAG	1 cut(s)	385
BspPI	GGATC	4 cut(s)	613, 745, 760, 1016
BspT104I	TTCGAA	1 cut(s)	520
BsrDI	GCAATG	1 cut(s)	107
BsrFI	RCCGGY	2 cut(s)	547, 1044
BsrI	ACTGG	3 cut(s)	15, 655, 710
BssAI	RCCGGY	2 cut(s)	547, 1044
BssECI	CCNNGG	1 cut(s)	475
BssMI	GATC	8 cut(s)	216, 256, 361, 605, 750, 765, 969, 1021
BssT1I	CCWWGG	1 cut(s)	475
Bst2UI	CCWGG	1 cut(s)	730
Bst4CI	ACNGT	7 cut(s)	40, 50, 203, 504, 613, 668, 1040
BstBI	TTCGAA	1 cut(s)	520
BstC8I	GCNNGC	3 cut(s)	595, 993, 1046
BstDEI	CTNAG	3 cut(s)	411, 846, 909
BstF5I	GGATG	3 cut(s)	11, 424, 472
BstFNI	CGCG	1 cut(s)	597
BstKTI	GATC	8 cut(s)	219, 259, 364, 608, 753, 768, 972, 1024
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	8 cut(s)	216, 256, 361, 605, 750, 765, 969, 1021
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNI	CCWGG	1 cut(s)	730
BstSCI	CCNGG	2 cut(s)	686, 728
BstSFI	CTRYAG	1 cut(s)	381
BstSLI	GKGCMC	1 cut(s)	808
BstUI	CGCG	1 cut(s)	597
BstV1I	GCAGC	4 cut(s)	163, 712, 802, 982
BstX2I	RGATCY	2 cut(s)	256, 969
BstYI	RGATCY	2 cut(s)	256, 969
BsuRI	GGCC	3 cut(s)	91, 236, 867
BtgZI	GCGATG	1 cut(s)	245
BtsCI	GGATG	3 cut(s)	11, 424, 472
BtsIMutI	CAGTG	2 cut(s)	208, 618
Cac8I	GCNNGC	3 cut(s)	595, 993, 1046
Cfr10I	RCCGGY	2 cut(s)	547, 1044
Cfr13I	GGNCC	3 cut(s)	472, 884, 925
Csp6I	GTAC	2 cut(s)	684, 850
CviAII	CATG	2 cut(s)	374, 770
CviQI	GTAC	2 cut(s)	684, 850
DdeI	CTNAG	3 cut(s)	411, 846, 909
DpnI	GATC	8 cut(s)	218, 258, 363, 607, 752, 767, 971, 1023
DpnII	GATC	8 cut(s)	216, 256, 361, 605, 750, 765, 969, 1021
EaeI	YGGCCR	2 cut(s)	234, 865
Eco130I	CCWWGG	1 cut(s)	475
Eco47I	GGWCC	3 cut(s)	472, 884, 925
Eco57I	CTGAAG	1 cut(s)	958
Eco88I	CYCGRG	1 cut(s)	720
EcoO109I	RGGNCCY	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	728
EcoT14I	CCWWGG	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	475
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	2 cut(s)	377, 773
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FaqI	GGGAC	2 cut(s)	661, 792
FatI	CATG	2 cut(s)	373, 769
FauNDI	CATATG	1 cut(s)	94
Fnu4HI	GCNGC	5 cut(s)	152, 726, 791, 868, 996
FokI	GGATG	2 cut(s)	411, 479
Fsp4HI	GCNGC	5 cut(s)	152, 726, 791, 868, 996
FspBI	CTAG	4 cut(s)	114, 143, 260, 782
GluI	GCNGC	5 cut(s)	152, 726, 791, 868, 996
GsuI	CTGGAG	1 cut(s)	693
HaeIII	GGCC	3 cut(s)	91, 236, 867
HapII	CCGG	4 cut(s)	548, 687, 887, 1045
Hin1II	CATG	2 cut(s)	377, 773
HincII	GTYRAC	2 cut(s)	484, 1036
HindII	GTYRAC	2 cut(s)	484, 1036
HinfI	GANTC	2 cut(s)	79, 950
HpaI	GTTAAC	1 cut(s)	1036
HpaII	CCGG	4 cut(s)	548, 687, 887, 1045
Hpy166II	GTNNAC	3 cut(s)	484, 806, 1036
Hpy188I	TCNGA	2 cut(s)	571, 977
Hpy188III	TCNNGA	7 cut(s)	143, 241, 428, 533, 720, 754, 887
Hpy8I	GTNNAC	3 cut(s)	484, 806, 1036
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	4 cut(s)	81, 192, 521, 615
HpyCH4III	ACNGT	7 cut(s)	40, 50, 203, 504, 613, 668, 1040
HpyCH4IV	ACGT	1 cut(s)	330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	3 cut(s)	411, 846, 909
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	377, 773
Kpn2I	TCCGGA	1 cut(s)	886
KroI	GCCGGC	1 cut(s)	1044
KroNI	GCCGGC	1 cut(s)	1046
KspAI	GTTAAC	1 cut(s)	1036
Kzo9I	GATC	8 cut(s)	216, 256, 361, 605, 750, 765, 969, 1021
LmnI	GCTCC	3 cut(s)	679, 712, 988
Lsp1109I	GCAGC	4 cut(s)	163, 712, 802, 982
LweI	GCATC	3 cut(s)	297, 586, 832
MaeI	CTAG	4 cut(s)	114, 143, 260, 782
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	2 cut(s)	326, 449
MalI	GATC	8 cut(s)	218, 258, 363, 607, 752, 767, 971, 1023
MboI	GATC	8 cut(s)	216, 256, 361, 605, 750, 765, 969, 1021
MboII	GAAGA	6 cut(s)	204, 835, 964, 979, 990, 1012
MflI	RGATCY	2 cut(s)	256, 969
MhlI	GDGCHC	1 cut(s)	808
MluCI	AATT	8 cut(s)	64, 208, 347, 487, 585, 698, 828, 902
MluI	ACGCGT	1 cut(s)	595
MmeI	TCCRAC	1 cut(s)	995
MroI	TCCGGA	1 cut(s)	886
MroNI	GCCGGC	1 cut(s)	1044
MroXI	GAANNNNTTC	1 cut(s)	971
MseI	TTAA	2 cut(s)	246, 1035
MslI	CAYNNNNRTG	2 cut(s)	321, 374
MspI	CCGG	4 cut(s)	548, 687, 887, 1045
MspR9I	CCNGG	2 cut(s)	688, 730
MvaI	CCWGG	1 cut(s)	730
MvnI	CGCG	1 cut(s)	597
MwoI	GCNNNNNNNGC	1 cut(s)	175
NaeI	GCCGGC	1 cut(s)	1046
NciI	CCSGG	1 cut(s)	688
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	8 cut(s)	216, 256, 361, 605, 750, 765, 969, 1021
NgoMIV	GCCGGC	1 cut(s)	1044
NlaIII	CATG	2 cut(s)	377, 773
NlaIV	GGNNCC	1 cut(s)	708
NspV	TTCGAA	1 cut(s)	520
PaeR7I	CTCGAG	1 cut(s)	720
PdiI	GCCGGC	1 cut(s)	1046
PdmI	GAANNNNTTC	1 cut(s)	971
PfeI	GAWTC	2 cut(s)	79, 950
PkrI	GCNGC	5 cut(s)	153, 727, 792, 869, 997
PpuMI	RGGWCCY	1 cut(s)	472
Psp1406I	AACGTT	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	728
PspGI	CCWGG	1 cut(s)	728
PspN4I	GGNNCC	1 cut(s)	708
PspPI	GGNCC	3 cut(s)	472, 884, 925
PspPPI	RGGWCCY	1 cut(s)	472
PstI	CTGCAG	1 cut(s)	385
PsuI	RGATCY	2 cut(s)	256, 969
RsaI	GTAC	2 cut(s)	685, 851
RsaNI	GTAC	2 cut(s)	684, 850
RseI	CAYNNNNRTG	2 cut(s)	321, 374
SaqAI	TTAA	2 cut(s)	246, 1035
SatI	GCNGC	5 cut(s)	152, 726, 791, 868, 996
Sau3AI	GATC	8 cut(s)	216, 256, 361, 605, 750, 765, 969, 1021
Sau96I	GGNCC	3 cut(s)	472, 884, 925
ScrFI	CCNGG	2 cut(s)	688, 730
SduI	GDGCHC	1 cut(s)	808
SfaNI	GCATC	3 cut(s)	297, 586, 832
SfcI	CTRYAG	1 cut(s)	381
Sfr274I	CTCGAG	1 cut(s)	720
SfuI	TTCGAA	1 cut(s)	520
SinI	GGWCC	3 cut(s)	472, 884, 925
SlaI	CTCGAG	1 cut(s)	720
SmiMI	CAYNNNNRTG	2 cut(s)	321, 374
SmlI	CTYRAG	1 cut(s)	720
SmoI	CTYRAG	1 cut(s)	720
Sse9I	AATT	8 cut(s)	64, 208, 347, 487, 585, 698, 828, 902
SsiI	CCGC	2 cut(s)	55, 868
SspMI	CTAG	4 cut(s)	114, 143, 260, 782
StyD4I	CCNGG	2 cut(s)	686, 728
StyI	CCWWGG	1 cut(s)	475
TaaI	ACNGT	7 cut(s)	40, 50, 203, 504, 613, 668, 1040
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	5 cut(s)	35, 215, 520, 721, 817
TasI	AATT	8 cut(s)	64, 208, 347, 487, 585, 698, 828, 902
TatI	WGTACW	1 cut(s)	849
TauI	GCSGC	1 cut(s)	870
TfiI	GAWTC	2 cut(s)	79, 950
Tru1I	TTAA	2 cut(s)	246, 1035
Tru9I	TTAA	2 cut(s)	246, 1035
TscAI	CASTG	2 cut(s)	208, 618
TseI	GCWGC	4 cut(s)	151, 725, 790, 995
TspDTI	ATGAA	6 cut(s)	17, 305, 362, 675, 836, 980
TspRI	CASTG	2 cut(s)	208, 618
VneI	GTGCAC	1 cut(s)	804
VpaK11BI	GGWCC	3 cut(s)	472, 884, 925
XapI	RAATTY	2 cut(s)	64, 208
XbaI	TCTAGA	1 cut(s)	142
XhoI	CTCGAG	1 cut(s)	720
XmnI	GAANNNNTTC	1 cut(s)	971
XspI	CTAG	4 cut(s)	114, 143, 260, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.