Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001785

Physical Location & Seq

Genomic Coordinates Reverse (-)

28453212 .. 28454480

Gene Structure 1269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G322600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCGCGCAGGCCTTTGGAGATAACAATCGTCTCAGCCAGCGACCTCAAGGATGTCAATATGTTCTCCAAGATGGACGTCTACGCCGCCGTTTCGGTCTCCGGCGACCCCGGCAACAAGAAGCAGAAGACCCCCGTCGCCAAAGACGGCGGCACAAACCCTAAGTGGAACAACTACTCCATCAAGTTCACTCTCGACGACGCCGCTTTGCTCGACAACCGCCTCACCCTCAACATCGAGCTCGTCTCCGAGAGAAGCTTGGGCGACACCAAAATCGGCTCAGTCCAAATCCCCCTCAAGGAGCTCTTCGACAGCTTGGGCGGCGGTGATTATCAGAAGAAGCAGATCAAGTACGTCGGTTACAGCGTTCAAACTTCCAGTGGGAAGCCCAAAGGATCCATCAATTTCGGGTACAAATTTGGGCATCCCAGGTCAAGCTCCGGGTACTCGCTGGAGAAGCAGAAGCCTAAGCCCAGGTCAAGCTCCGGGTACTCGCTGGAGAAGCAGTACTCGCTGGAGAAGCAGAAGCCTAAGCCCCCGTCTGATTCACGGAATGAATTTGAATTTGAACTTCCCAAGATGAAAATGAAAGAAAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

Protein Analysis

201

Amino Acids

22.34

Weight (kDa)

9.6

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09070
fragaria_vesca	FvH4_6g06320 FvH4_6g06320 FvH4_6g06321
malus_domestica	MD04G1202300.v1.1 MD12G1216300.v1.1
prunus_persica	Prupe.6G322500_v2.0.a1 Prupe.6G322500_v2.0.a1 Prupe.6G322600_v2.0.a1
pyrus_communis	pycom04g17850 pycom12g20180
rosa_chinensis	RchiOBHm_Chr3g0455361 RchiOBHm_Chr3g0455371
rosa_laevigata	RLG00000025110 RLG00000025366
rosa_multiflora	Rmu_co8331519.1_g000001 Rmu_sc0002169.1_g000048 Rmu_sc0002169.1_g000049 Rmu_sc0002435.1_g000019 Rmu_sc0003222.1_g000014 Rmu_sc0004087.1_g000009 Rmu_sc0004343.1_g000002 Rmu_sc0004894.1_g000012 Rmu_sc0012909.1_g000009 Rmu_sc0024960.1_g000001 Rmu_sc0038181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379190 Rroxscaffold_6G00420510 Rroxscaffold_6G00424320 Rroxscaffold_6G00424330
rosa_rugosa	Rorug03G0006800 Rorug03G0006900 Rorug03G0033900 Rorug03G0287400
rosa_samantha	Rh3AG066400 Rh3AG066500 Rh3AG091800 Rh3BG068700 Rh3BG068800 Rh3CG067100 Rh3CG067200 Rh3CG095600 Rh3DG068600 Rh4BG236100
rosa_wichuraiana	Rw3G005240 Rw3G005250 Rw7G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	81
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	1 cut(s)	7
AciI	CCGC	6 cut(s)	87, 150, 204, 220, 321, 324
AclWI	GGATC	2 cut(s)	390, 403
AcsI	RAATTY	3 cut(s)	416, 557, 563
AcyI	GRCGYC	2 cut(s)	78, 201
AfaI	GTAC	5 cut(s)	353, 413, 446, 491, 509
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	3 cut(s)	371, 563, 569
AjnI	CCWGG	2 cut(s)	428, 473
AloI	GAACNNNNNNTCC	2 cut(s)	161, 193
AluBI	AGCT	6 cut(s)	241, 258, 304, 315, 438, 483
AluI	AGCT	6 cut(s)	241, 258, 304, 315, 438, 483
Alw21I	GWGCWC	2 cut(s)	243, 306
Alw26I	GTCTC	3 cut(s)	37, 103, 250
AlwI	GGATC	2 cut(s)	390, 403
AoxI	GGCC	1 cut(s)	11
ApoI	RAATTY	3 cut(s)	416, 557, 563
AspLEI	GCGC	2 cut(s)	7, 9
AsuC2I	CCSGG	3 cut(s)	111, 442, 487
AsuHPI	GGTGA	2 cut(s)	217, 338
BamHI	GGATCC	1 cut(s)	395
BanII	GRGCYC	2 cut(s)	243, 306
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	2 cut(s)	243, 306
BccI	CCATC	3 cut(s)	67, 188, 407
BceAI	ACGGC	2 cut(s)	74, 163
BciT130I	CCWGG	2 cut(s)	430, 475
BcnI	CCSGG	3 cut(s)	111, 442, 487
BcoDI	GTCTC	3 cut(s)	37, 103, 250
BisI	GCNGC	4 cut(s)	87, 151, 204, 322
BlsI	GCNGC	4 cut(s)	88, 152, 205, 323
BmcAI	AGTACT	1 cut(s)	509
Bme1390I	CCNGG	5 cut(s)	111, 430, 442, 475, 487
BmiI	GGNNCC	1 cut(s)	397
BmrFI	CCNGG	5 cut(s)	111, 430, 442, 475, 487
BmsI	GCATC	1 cut(s)	433
BoxI	GACNNNNGTC	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	134
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
BpmI	CTGGAG	3 cut(s)	473, 518, 536
Bpu10I	CCTNAGC	2 cut(s)	468, 531
BpuEI	CTTGAG	2 cut(s)	32, 281
BpuMI	CCSGG	3 cut(s)	111, 442, 487
BsaBI	GATNNNNATC	1 cut(s)	26
BsaHI	GRCGYC	2 cut(s)	78, 201
BsaI	GGTCTC	1 cut(s)	103
BsaJI	CCNNGG	3 cut(s)	109, 428, 473
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 491, 521
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	378
Bse8I	GATNNNNATC	1 cut(s)	26
BseBI	CCWGG	2 cut(s)	430, 475
BseDI	CCNNGG	3 cut(s)	109, 428, 473
BseGI	GGATG	2 cut(s)	58, 424
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	2 cut(s)	48, 294
BseNI	ACTGG	1 cut(s)	378
BsePI	GCGCGC	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	1 cut(s)	13
BsiHKAI	GWGCWC	2 cut(s)	243, 306
BsiSI	CCGG	4 cut(s)	102, 111, 441, 486
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	3 cut(s)	37, 103, 250
BsmBI	CGTCTC	2 cut(s)	37, 250
BsnI	GGCC	1 cut(s)	13
Bso31I	GGTCTC	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	243, 306
Bsp143I	GATC	2 cut(s)	345, 395
BspACI	CCGC	6 cut(s)	87, 150, 204, 220, 321, 324
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	2 cut(s)	47, 293
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	397
BspPI	GGATC	2 cut(s)	390, 403
BspQI	GCTCTTC	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	378
BssECI	CCNNGG	3 cut(s)	109, 428, 473
BssHII	GCGCGC	1 cut(s)	5
BssMI	GATC	2 cut(s)	345, 395
BssNI	GRCGYC	2 cut(s)	78, 201
Bst2UI	CCWGG	2 cut(s)	430, 475
Bst6I	CTCTTC	1 cut(s)	311
BstACI	GRCGYC	2 cut(s)	78, 201
BstC8I	GCNNGC	3 cut(s)	7, 11, 40
BstDEI	CTNAG	5 cut(s)	34, 162, 280, 468, 531
BstF5I	GGATG	2 cut(s)	58, 424
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	2 cut(s)	7, 9
BstKTI	GATC	2 cut(s)	348, 398
BstMAI	GTCTC	3 cut(s)	37, 103, 250
BstMBI	GATC	2 cut(s)	345, 395
BstMWI	GCNNNNNNNGC	6 cut(s)	111, 321, 457, 502, 511, 520
BstNI	CCWGG	2 cut(s)	430, 475
BstPAI	GACNNNNGTC	1 cut(s)	134
BstSCI	CCNGG	5 cut(s)	109, 428, 440, 473, 485
BstUI	CGCG	1 cut(s)	7
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
BsuRI	GGCC	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	58, 424
BtsIMutI	CAGTG	1 cut(s)	385
Cac8I	GCNNGC	3 cut(s)	7, 11, 40
CfoI	GCGC	2 cut(s)	7, 9
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	5 cut(s)	352, 412, 445, 490, 508
CviQI	GTAC	5 cut(s)	352, 412, 445, 490, 508
DdeI	CTNAG	5 cut(s)	34, 162, 280, 468, 531
DpnI	GATC	2 cut(s)	347, 397
DpnII	GATC	2 cut(s)	345, 395
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Ecl136II	GAGCTC	2 cut(s)	241, 304
Eco147I	AGGCCT	1 cut(s)	13
Eco24I	GRGCYC	2 cut(s)	243, 306
Eco31I	GGTCTC	1 cut(s)	103
Eco53kI	GAGCTC	2 cut(s)	241, 304
EcoICRI	GAGCTC	2 cut(s)	241, 304
EcoRII	CCWGG	2 cut(s)	428, 473
EcoT38I	GRGCYC	2 cut(s)	243, 306
Esp3I	CGTCTC	2 cut(s)	37, 250
FaiI	YATR	1 cut(s)	62
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	4 cut(s)	87, 151, 204, 322
FokI	GGATG	2 cut(s)	65, 411
FriOI	GRGCYC	2 cut(s)	243, 306
Fsp4HI	GCNGC	4 cut(s)	87, 151, 204, 322
GlaI	GCGC	2 cut(s)	6, 8
GluI	GCNGC	4 cut(s)	87, 151, 204, 322
GsuI	CTGGAG	3 cut(s)	473, 518, 536
HaeIII	GGCC	1 cut(s)	13
HapII	CCGG	4 cut(s)	102, 111, 441, 486
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	2 cut(s)	7, 9
Hin1I	GRCGYC	2 cut(s)	78, 201
Hin6I	GCGC	2 cut(s)	5, 7
HinP1I	GCGC	2 cut(s)	5, 7
HindIII	AAGCTT	1 cut(s)	256
HinfI	GANTC	2 cut(s)	545, 597
HpaII	CCGG	4 cut(s)	102, 111, 441, 486
HphI	GGTGA	2 cut(s)	217, 338
Hpy166II	GTNNAC	2 cut(s)	82, 189
Hpy188I	TCNGA	4 cut(s)	250, 336, 544, 602
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	2 cut(s)	82, 189
Hpy99I	CGWCG	4 cut(s)	140, 200, 203, 359
HpyCH4IV	ACGT	2 cut(s)	78, 354
HpyF10VI	GCNNNNNNNGC	6 cut(s)	111, 321, 457, 502, 511, 520
HpyF3I	CTNAG	5 cut(s)	34, 162, 280, 468, 531
HpySE526I	ACGT	2 cut(s)	78, 354
Hsp92I	GRCGYC	2 cut(s)	78, 201
HspAI	GCGC	2 cut(s)	5, 7
Kzo9I	GATC	2 cut(s)	345, 395
LguI	GCTCTTC	1 cut(s)	311
LmnI	GCTCC	3 cut(s)	301, 443, 488
LweI	GCATC	1 cut(s)	433
MaeII	ACGT	2 cut(s)	78, 354
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	2 cut(s)	347, 397
MboI	GATC	2 cut(s)	345, 395
MboII	GAAGA	3 cut(s)	139, 298, 349
MflI	RGATCY	1 cut(s)	395
MhlI	GDGCHC	2 cut(s)	243, 306
MluCI	AATT	4 cut(s)	403, 416, 557, 563
MnlI	CCTC	4 cut(s)	56, 233, 239, 305
MspI	CCGG	4 cut(s)	102, 111, 441, 486
MspR9I	CCNGG	5 cut(s)	111, 430, 442, 475, 487
MvaI	CCWGG	2 cut(s)	430, 475
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	6 cut(s)	111, 321, 457, 502, 511, 520
NciI	CCSGG	3 cut(s)	111, 442, 487
NdeII	GATC	2 cut(s)	345, 395
NlaIV	GGNNCC	1 cut(s)	397
PauI	GCGCGC	1 cut(s)	5
PceI	AGGCCT	1 cut(s)	13
PciSI	GCTCTTC	1 cut(s)	311
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	545, 597
PkrI	GCNGC	4 cut(s)	88, 152, 205, 323
PshAI	GACNNNNGTC	1 cut(s)	134
Psp124BI	GAGCTC	2 cut(s)	243, 306
Psp6I	CCWGG	2 cut(s)	428, 473
PspGI	CCWGG	2 cut(s)	428, 473
PspN4I	GGNNCC	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	395
PteI	GCGCGC	1 cut(s)	5
RsaI	GTAC	5 cut(s)	353, 413, 446, 491, 509
RsaNI	GTAC	5 cut(s)	352, 412, 445, 490, 508
SacI	GAGCTC	2 cut(s)	243, 306
SapI	GCTCTTC	1 cut(s)	311
SatI	GCNGC	4 cut(s)	87, 151, 204, 322
Sau3AI	GATC	2 cut(s)	345, 395
ScaI	AGTACT	1 cut(s)	509
ScrFI	CCNGG	5 cut(s)	111, 430, 442, 475, 487
SduI	GDGCHC	2 cut(s)	243, 306
SfaNI	GCATC	1 cut(s)	433
SmlI	CTYRAG	2 cut(s)	47, 296
SmoI	CTYRAG	2 cut(s)	47, 296
Sse9I	AATT	4 cut(s)	403, 416, 557, 563
SseBI	AGGCCT	1 cut(s)	13
SsiI	CCGC	6 cut(s)	87, 150, 204, 220, 321, 324
SstI	GAGCTC	2 cut(s)	243, 306
StuI	AGGCCT	1 cut(s)	13
StyD4I	CCNGG	5 cut(s)	109, 428, 440, 473, 485
TaiI	ACGT	2 cut(s)	81, 357
TaqI	TCGA	4 cut(s)	195, 213, 237, 309
TaqII	GACCGA	1 cut(s)	85
TasI	AATT	4 cut(s)	403, 416, 557, 563
TatI	WGTACW	1 cut(s)	507
TauI	GCSGC	4 cut(s)	89, 153, 206, 324
TfiI	GAWTC	2 cut(s)	545, 597
TscAI	CASTG	1 cut(s)	385
TspDTI	ATGAA	3 cut(s)	570, 596, 602
TspGWI	ACGGA	1 cut(s)	565
TspRI	CASTG	1 cut(s)	385
XapI	RAATTY	3 cut(s)	416, 557, 563
XmiI	GTMKAC	1 cut(s)	81
ZraI	GACGTC	1 cut(s)	79
ZrmI	AGTACT	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.