Rroxscaffold_6G00420510

Protein kinase C conserved region 2 (CalB)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
41724892 .. 41737303
12412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420510.1

Sequence Viewer

Length: 1107 bp
ATGGTGTCGGGGCCAGCTGCTCCTCTTCCACGTCAATCTCTTCTCCAAGATGAACGTCTACGCCGTCGTTTCGATCACCGGCGGAGCCAAGAAGCGAAGCTCAAGACCCCCGTCCACAAGGGCGGCGGCACCAATCCCAAGTGGAACCACTCCCTCAAGTTCACGCTCGACGACACGGCTCTCAACCAAGACCACCGCAAAGTCGAGATTCGGCTCGTCTCCGACCGCACCCTCCGCAATACCAAGATCGGAAAAGTTGTTATTCCGGCAAAGGAGTTGCTTCAATATTCCGGTACGGACGTGAGCTGCCAGCTAGTGACGCACAAGGGGAGATCCAAAGGGAGCGTCGGCTTCGGTACAAGTTGGGCGAGAAATGCGGAACAGGTGACTCAAAGATTCTCTCGTCTTTCCCAATCGCCCGATATAGCCACTAAACGGGAAGAGAATCACCCGACCTCTACTAAGGGTCAAAGTGTCACCACTAACCGGGCCGATGAGCCCATCACTACCGCCGTCTCGATACGGCAGAAAGTGGAGAAGGAGAGGCTTTCGTTGCGAAGCCTATTCCGAGAGGAGCGACCACCGAGGAAAGATGATCGCCGCGAAGATGGTGAAAACCGACTTTGGACCTTTTCCGCGCCCAAACCAATCGAAAGGGAAGAAATATTGCAAATTTCACAACTTGTGGAATCACAATACCGCGGACTGCGTGAAGCTCAAAGACCGATTCGGGTATGGCTTAATAATAGCAGCTTGCAGGTGGAAGCTCCGATAACGGCGGCGCTGGTGGACTCGAACCCTTTCCCCGAGACCGGGATCAATATGGTCGATGTGAACTGGGCTAAACGAACCGAGAGGAAACCAACCTTGGATTTGAGCACAAAGGGGCAAGAAGGAAAATCTGCGATGATGACACTCGCAAAGAAGAAAGCTAAACCGGTTGGGCGGGCTTCACCCGTGGTCTTATGCTCGCGATGCAAAGAAGAGTGTGGCATCCAAGTGTCATCCGAAGAGAGCGAGCGGACGTTTCACTTCGGCTCTCTCCCACCTTTCGAGTGGGCCTCGTCATCGCGGAACTATCGGCCTTCCGGCCGAAAGAGAAAGTGA

Protein Analysis

368

Amino Acids

41.77

Weight (kDa)

10.18

Isoelectric Point (pI)

56.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 29 - 100 2.7e-08 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 748
Acc36I ACCTGC 1 cut(s) 748
AccB1I GGYRCC 1 cut(s) 128
AccBSI CCGCTC 1 cut(s) 1021
AccI GTMKAC 1 cut(s) 58
AccII CGCG 5 cut(s) 603, 638, 702, 973, 1072
AclWI GGATC 2 cut(s) 327, 824
AcoI YGGCCR 1 cut(s) 1090
AcsI RAATTY 1 cut(s) 672
AfaI GTAC 2 cut(s) 295, 358
AfiI CCNNNNNNNGG 4 cut(s) 435, 486, 812, 813
AgeI ACCGGT 1 cut(s) 937
AgsI TTSAA 1 cut(s) 284
AjiI CACGTC 2 cut(s) 32, 301
AjuI GAANNNNNNNTTGG 2 cut(s) 851, 883
AluBI AGCT 8 cut(s) 17, 100, 306, 313, 716, 753, 767, 932
AluI AGCT 8 cut(s) 17, 100, 306, 313, 716, 753, 767, 932
Alw21I GWGCWC 1 cut(s) 881
Alw26I GTCTC 3 cut(s) 223, 520, 803
AlwI GGATC 2 cut(s) 327, 824
Ama87I CYCGRG 1 cut(s) 806
AoxI GGCC 5 cut(s) 11, 489, 1059, 1082, 1090
ApeKI GCWGC 3 cut(s) 17, 306, 750
ApoI RAATTY 1 cut(s) 672
ArsI GACNNNNNNTTYG 2 cut(s) 330, 362
AsiGI ACCGGT 1 cut(s) 937
Asp700I GAANNNNTTC 1 cut(s) 800
AspLEI GCGC 2 cut(s) 640, 784
AspS9I GGNCC 4 cut(s) 11, 489, 627, 1059
AsuC2I CCSGG 2 cut(s) 488, 814
AsuHPI GGTGA 6 cut(s) 68, 397, 440, 469, 623, 945
AvaI CYCGRG 1 cut(s) 806
AvaII GGWCC 1 cut(s) 627
BaeI ACNNNNGTAYC 2 cut(s) 285, 318
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 881
BbvI GCAGC 3 cut(s) 4, 293, 762
BccI CCATC 2 cut(s) 509, 602
BceAI ACGGC 5 cut(s) 48, 192, 497, 539, 792
BcnI CCSGG 2 cut(s) 488, 814
BcoDI GTCTC 3 cut(s) 223, 520, 803
BfaI CTAG 1 cut(s) 314
BfoI RGCGCY 1 cut(s) 785
BfuAI ACCTGC 1 cut(s) 748
BisI GCNGC 7 cut(s) 18, 124, 127, 307, 601, 751, 780
BlsI GCNGC 7 cut(s) 19, 125, 128, 308, 602, 752, 781
Bme1390I CCNGG 2 cut(s) 488, 814
Bme18I GGWCC 1 cut(s) 627
BmeT110I CYCGRG 1 cut(s) 806
BmgBI CACGTC 2 cut(s) 32, 301
BmgT120I GGNCC 4 cut(s) 11, 489, 627, 1059
BmiI GGNNCC 4 cut(s) 12, 86, 130, 146
BmrFI CCNGG 2 cut(s) 488, 814
BmrI ACTGGG 1 cut(s) 847
BmsI GCATC 2 cut(s) 965, 1002
BmuI ACTGGG 1 cut(s) 847
BoxI GACNNNNGTC 1 cut(s) 110
BplI GAGNNNNNCTC 2 cut(s) 1046, 1078
BpuEI CTTGAG 2 cut(s) 86, 140
BpuMI CCSGG 2 cut(s) 488, 814
BsaI GGTCTC 1 cut(s) 803
BsaJI CCNNGG 4 cut(s) 584, 700, 867, 957
BsaWI WCCGGW 2 cut(s) 290, 937
Bsc4I CCNNNNNNNGG 4 cut(s) 435, 486, 812, 813
Bse118I RCCGGY 2 cut(s) 78, 937
Bse1I ACTGG 1 cut(s) 842
BseDI CCNNGG 4 cut(s) 584, 700, 867, 957
BseGI GGATG 2 cut(s) 993, 1004
BseLI CCNNNNNNNGG 4 cut(s) 435, 486, 812, 813
BseNI ACTGG 1 cut(s) 842
BseRI GAGGAG 2 cut(s) 12, 587
BseX3I CGGCCG 1 cut(s) 1090
BseXI GCAGC 3 cut(s) 4, 293, 762
Bsh1236I CGCG 5 cut(s) 603, 638, 702, 973, 1072
Bsh1285I CGRYCG 2 cut(s) 226, 1093
BshFI GGCC 5 cut(s) 13, 491, 1061, 1084, 1092
BshNI GGYRCC 1 cut(s) 128
BshTI ACCGGT 1 cut(s) 937
BsiEI CGRYCG 2 cut(s) 226, 1093
BsiHKAI GWGCWC 1 cut(s) 881
BsiHKCI CYCGRG 1 cut(s) 806
BsiSI CCGG 7 cut(s) 79, 266, 291, 487, 813, 938, 1089
BslI CCNNNNNNNGG 4 cut(s) 435, 486, 812, 813
BsmAI GTCTC 3 cut(s) 223, 520, 803
BsmBI CGTCTC 2 cut(s) 223, 520
BsnI GGCC 5 cut(s) 13, 491, 1061, 1084, 1092
Bso31I GGTCTC 1 cut(s) 803
BsoBI CYCGRG 1 cut(s) 806
Bsp1286I GDGCHC 2 cut(s) 501, 881
Bsp143I GATC 5 cut(s) 73, 246, 332, 595, 816
Bsp68I TCGCGA 1 cut(s) 973
BspANI GGCC 5 cut(s) 13, 491, 1061, 1084, 1092
BspFNI CGCG 5 cut(s) 603, 638, 702, 973, 1072
BspLI GGNNCC 4 cut(s) 12, 86, 130, 146
BspMI ACCTGC 1 cut(s) 748
BspPI GGATC 2 cut(s) 327, 824
BspT107I GGYRCC 1 cut(s) 128
BspTNI GGTCTC 1 cut(s) 803
BsrBI CCGCTC 1 cut(s) 1021
BsrFI RCCGGY 2 cut(s) 78, 937
BsrI ACTGG 1 cut(s) 842
BssAI RCCGGY 2 cut(s) 78, 937
BssECI CCNNGG 4 cut(s) 584, 700, 867, 957
BssMI GATC 5 cut(s) 73, 246, 332, 595, 816
BssT1I CCWWGG 1 cut(s) 867
Bst6I CTCTTC 5 cut(s) 30, 45, 435, 978, 1005
BstC8I GCNNGC 6 cut(s) 15, 311, 755, 948, 971, 1019
BstDEI CTNAG 1 cut(s) 462
BstDSI CCRYGG 2 cut(s) 700, 957
BstF5I GGATG 2 cut(s) 993, 1004
BstFNI CGCG 5 cut(s) 603, 638, 702, 973, 1072
BstH2I RGCGCY 1 cut(s) 785
BstHHI GCGC 2 cut(s) 640, 784
BstKTI GATC 5 cut(s) 76, 249, 335, 598, 819
BstMAI GTCTC 3 cut(s) 223, 520, 803
BstMBI GATC 5 cut(s) 73, 246, 332, 595, 816
BstMCI CGRYCG 2 cut(s) 226, 1093
BstMWI GCNNNNNNNGC 5 cut(s) 234, 319, 374, 553, 975
BstPAI GACNNNNGTC 1 cut(s) 110
BstSCI CCNGG 2 cut(s) 486, 812
BstUI CGCG 5 cut(s) 603, 638, 702, 973, 1072
BstV1I GCAGC 3 cut(s) 4, 293, 762
BstX2I RGATCY 1 cut(s) 332
BstYI RGATCY 1 cut(s) 332
BstZI CGGCCG 1 cut(s) 1090
BsuRI GGCC 5 cut(s) 13, 491, 1061, 1084, 1092
BtgI CCRYGG 2 cut(s) 700, 957
BtgZI GCGATG 3 cut(s) 920, 988, 1053
BtrI CACGTC 2 cut(s) 32, 301
BtsCI GGATG 2 cut(s) 993, 1004
BtuMI TCGCGA 1 cut(s) 973
BveI ACCTGC 1 cut(s) 748
Cac8I GCNNGC 6 cut(s) 15, 311, 755, 948, 971, 1019
CfoI GCGC 2 cut(s) 640, 784
Cfr10I RCCGGY 2 cut(s) 78, 937
Cfr13I GGNCC 4 cut(s) 11, 489, 627, 1059
Cfr42I CCGCGG 1 cut(s) 703
CseI GACGC 2 cut(s) 328, 334
Csp6I GTAC 2 cut(s) 294, 357
CspAI ACCGGT 1 cut(s) 937
CviQI GTAC 2 cut(s) 294, 357
DdeI CTNAG 1 cut(s) 462
DpnI GATC 5 cut(s) 75, 248, 334, 597, 818
DpnII GATC 5 cut(s) 73, 246, 332, 595, 816
EaeI YGGCCR 1 cut(s) 1090
EagI CGGCCG 1 cut(s) 1090
Eam1104I CTCTTC 5 cut(s) 30, 45, 435, 978, 1005
EarI CTCTTC 5 cut(s) 30, 45, 435, 978, 1005
EciI GGCGGA 1 cut(s) 97
EclXI CGGCCG 1 cut(s) 1090
Eco130I CCWWGG 1 cut(s) 867
Eco24I GRGCYC 1 cut(s) 501
Eco31I GGTCTC 1 cut(s) 803
Eco47I GGWCC 1 cut(s) 627
Eco52I CGGCCG 1 cut(s) 1090
Eco88I CYCGRG 1 cut(s) 806
EcoT14I CCWWGG 1 cut(s) 867
EcoT38I GRGCYC 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 867
Esp3I CGTCTC 2 cut(s) 223, 520
FaiI YATR 4 cut(s) 425, 736, 824, 967
FauI CCCGC 1 cut(s) 939
FblI GTMKAC 1 cut(s) 58
Fnu4HI GCNGC 7 cut(s) 18, 124, 127, 307, 601, 751, 780
FokI GGATG 2 cut(s) 980, 991
FriOI GRGCYC 1 cut(s) 501
Fsp4HI GCNGC 7 cut(s) 18, 124, 127, 307, 601, 751, 780
FspBI CTAG 1 cut(s) 314
GlaI GCGC 2 cut(s) 639, 783
GluI GCNGC 7 cut(s) 18, 124, 127, 307, 601, 751, 780
HaeII RGCGCY 1 cut(s) 785
HaeIII GGCC 5 cut(s) 13, 491, 1061, 1084, 1092
HapII CCGG 7 cut(s) 79, 266, 291, 487, 813, 938, 1089
HgaI GACGC 2 cut(s) 328, 334
HhaI GCGC 2 cut(s) 640, 784
Hin6I GCGC 2 cut(s) 638, 782
HinP1I GCGC 2 cut(s) 638, 782
HinfI GANTC 7 cut(s) 208, 388, 396, 445, 689, 727, 791
HpaII CCGG 7 cut(s) 79, 266, 291, 487, 813, 938, 1089
HphI GGTGA 6 cut(s) 68, 397, 440, 469, 623, 945
Hpy166II GTNNAC 5 cut(s) 59, 115, 162, 790, 835
Hpy188I TCNGA 5 cut(s) 223, 251, 569, 771, 1009
Hpy188III TCNNGA 4 cut(s) 103, 205, 517, 972
Hpy8I GTNNAC 5 cut(s) 59, 115, 162, 790, 835
Hpy99I CGWCG 3 cut(s) 69, 173, 350
HpyAV CCTTC 3 cut(s) 532, 887, 1095
HpyCH4IV ACGT 4 cut(s) 31, 55, 300, 1025
HpyCH4V TGCA 3 cut(s) 670, 757, 978
HpyF10VI GCNNNNNNNGC 5 cut(s) 234, 319, 374, 553, 975
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 4 cut(s) 31, 55, 300, 1025
HspAI GCGC 2 cut(s) 638, 782
KspI CCGCGG 1 cut(s) 703
Kzo9I GATC 5 cut(s) 73, 246, 332, 595, 816
LmnI GCTCC 5 cut(s) 25, 84, 342, 574, 772
Lsp1109I GCAGC 3 cut(s) 4, 293, 762
LweI GCATC 2 cut(s) 965, 1002
MaeI CTAG 1 cut(s) 314
MaeII ACGT 4 cut(s) 31, 55, 300, 1025
MaeIII GTNAC 3 cut(s) 316, 385, 475
MalI GATC 5 cut(s) 75, 248, 334, 597, 818
MbiI CCGCTC 1 cut(s) 1021
MboI GATC 5 cut(s) 73, 246, 332, 595, 816
MboII GAAGA 8 cut(s) 17, 32, 452, 617, 671, 937, 995, 1022
MflI RGATCY 1 cut(s) 332
MhlI GDGCHC 2 cut(s) 501, 881
MluCI AATT 1 cut(s) 672
MlyI GAGTC 2 cut(s) 382, 785
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 9 cut(s) 33, 164, 242, 466, 537, 565, 579, 849, 1072
MroXI GAANNNNTTC 1 cut(s) 800
MseI TTAA 1 cut(s) 741
MslI CAYNNNNRTG 1 cut(s) 998
MspA1I CMGCKG 2 cut(s) 17, 702
MspI CCGG 7 cut(s) 79, 266, 291, 487, 813, 938, 1089
MspR9I CCNGG 2 cut(s) 488, 814
MvnI CGCG 5 cut(s) 603, 638, 702, 973, 1072
MwoI GCNNNNNNNGC 5 cut(s) 234, 319, 374, 553, 975
NciI CCSGG 2 cut(s) 488, 814
NdeII GATC 5 cut(s) 73, 246, 332, 595, 816
NlaIV GGNNCC 4 cut(s) 12, 86, 130, 146
NmuCI GTSAC 3 cut(s) 316, 385, 475
NruI TCGCGA 1 cut(s) 973
PaqCI CACCTGC 1 cut(s) 748
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 800
PfeI GAWTC 5 cut(s) 208, 396, 445, 689, 727
PinAI ACCGGT 1 cut(s) 937
PkrI GCNGC 7 cut(s) 19, 125, 128, 308, 602, 752, 781
PleI GAGTC 2 cut(s) 382, 785
PpsI GAGTC 2 cut(s) 382, 785
PshAI GACNNNNGTC 1 cut(s) 110
PspN4I GGNNCC 4 cut(s) 12, 86, 130, 146
PspPI GGNCC 4 cut(s) 11, 489, 627, 1059
PsuI RGATCY 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 17
RruI TCGCGA 1 cut(s) 973
RsaI GTAC 2 cut(s) 295, 358
RsaNI GTAC 2 cut(s) 294, 357
RseI CAYNNNNRTG 1 cut(s) 998
SacII CCGCGG 1 cut(s) 703
SaqAI TTAA 1 cut(s) 741
SatI GCNGC 7 cut(s) 18, 124, 127, 307, 601, 751, 780
Sau3AI GATC 5 cut(s) 73, 246, 332, 595, 816
Sau96I GGNCC 4 cut(s) 11, 489, 627, 1059
SchI GAGTC 2 cut(s) 382, 785
ScrFI CCNGG 2 cut(s) 488, 814
SduI GDGCHC 2 cut(s) 501, 881
SfaNI GCATC 2 cut(s) 965, 1002
Sfr303I CCGCGG 1 cut(s) 703
SgrAI CRCCGGYG 1 cut(s) 78
SgrBI CCGCGG 1 cut(s) 703
SinI GGWCC 1 cut(s) 627
SmiMI CAYNNNNRTG 1 cut(s) 998
SmlI CTYRAG 2 cut(s) 101, 155
SmoI CTYRAG 2 cut(s) 101, 155
Sse9I AATT 1 cut(s) 672
SspI AATATT 2 cut(s) 287, 666
SspMI CTAG 1 cut(s) 314
StyD4I CCNGG 2 cut(s) 486, 812
StyI CCWWGG 1 cut(s) 867
TaiI ACGT 4 cut(s) 34, 58, 303, 1028
TaqI TCGA 8 cut(s) 72, 168, 204, 518, 651, 794, 828, 1053
TaqII GACCGA 1 cut(s) 739
TasI AATT 1 cut(s) 672
TauI GCSGC 4 cut(s) 126, 129, 603, 782
TfiI GAWTC 5 cut(s) 208, 396, 445, 689, 727
Tru1I TTAA 1 cut(s) 741
Tru9I TTAA 1 cut(s) 741
TseFI GTSAC 3 cut(s) 316, 385, 475
TseI GCWGC 3 cut(s) 17, 306, 750
Tsp45I GTSAC 3 cut(s) 316, 385, 475
TspDTI ATGAA 1 cut(s) 66
TspGWI ACGGA 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 627
XapI RAATTY 1 cut(s) 672
XcmI CCANNNNNNNNNTGG 1 cut(s) 1053
XmiI GTMKAC 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 800
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.