Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004087.1

Orthogroup ID

OG0001785

Physical Location & Seq

Genomic Coordinates Reverse (-)

28364 .. 28783

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004087.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atggattgcaggcctttggaaataacggtgttcaacgcaaatgatatcaaggacgtgaacttgttctctaagatggacgtctatgtcgttgtctccgtctccggtaacagcgtcaagaagcagaagctccgcactcccgtccacaaagaaatcggcaccaaccccaaatggaaccacaccctcaagttcaccctccacaactccgccctcgaccacctccaaatcaaaatcaagctcatctatgaccgcaccttcggcgagaccaagattggaaaggtcgtcattccggtcaaggacctcctgcaaaacgagaagaacaacaagcacgtgacctatccgatcatcattgccaaggggagacccaaaggcaatgagatgagaacgacgacggcgatgaagccacagatgatggaggcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

Protein Analysis

139

Amino Acids

15.88

Weight (kDa)

9.8

Isoelectric Point (pI)

24.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09070
fragaria_vesca	FvH4_6g06320 FvH4_6g06320 FvH4_6g06321
malus_domestica	MD04G1202300.v1.1 MD12G1216300.v1.1
prunus_persica	Prupe.6G322500_v2.0.a1 Prupe.6G322500_v2.0.a1 Prupe.6G322600_v2.0.a1
pyrus_communis	pycom04g17850 pycom12g20180
rosa_chinensis	RchiOBHm_Chr3g0455361 RchiOBHm_Chr3g0455371
rosa_laevigata	RLG00000025110 RLG00000025366
rosa_multiflora	Rmu_co8331519.1_g000001 Rmu_sc0002169.1_g000048 Rmu_sc0002169.1_g000049 Rmu_sc0002435.1_g000019 Rmu_sc0003222.1_g000014 Rmu_sc0004087.1_g000009 Rmu_sc0004343.1_g000002 Rmu_sc0004894.1_g000012 Rmu_sc0012909.1_g000009 Rmu_sc0024960.1_g000001 Rmu_sc0038181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379190 Rroxscaffold_6G00420510 Rroxscaffold_6G00424320 Rroxscaffold_6G00424330
rosa_rugosa	Rorug03G0006800 Rorug03G0006900 Rorug03G0033900 Rorug03G0287400
rosa_samantha	Rh3AG066400 Rh3AG066500 Rh3AG091800 Rh3BG068700 Rh3BG068800 Rh3CG067100 Rh3CG067200 Rh3CG095600 Rh3DG068600 Rh4BG236100
rosa_wichuraiana	Rw3G005240 Rw3G005250 Rw7G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AatII	GACGTC	1 cut(s)	81
AccB1I	GGYRCC	1 cut(s)	155
AciI	CCGC	3 cut(s)	130, 204, 247
AcvI	CACGTG	1 cut(s)	328
AcyI	GRCGYC	1 cut(s)	78
AgsI	TTSAA	1 cut(s)	34
AjiI	CACGTC	1 cut(s)	55
AluBI	AGCT	2 cut(s)	127, 235
AluI	AGCT	2 cut(s)	127, 235
Alw26I	GTCTC	4 cut(s)	97, 103, 254, 352
AoxI	GGCC	2 cut(s)	11, 414
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
Asp700I	GAANNNNTTC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	155
BbrPI	CACGTG	1 cut(s)	328
BccI	CCATC	2 cut(s)	67, 403
BceAI	ACGGC	1 cut(s)	405
BcoDI	GTCTC	4 cut(s)	97, 103, 254, 352
BfaI	CTAG	1 cut(s)	418
Bme18I	GGWCC	1 cut(s)	295
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	157, 173
BpuEI	CTTGAG	1 cut(s)	167
BsaAI	YACGTR	1 cut(s)	328
BsaHI	GRCGYC	1 cut(s)	78
BsaI	GGTCTC	2 cut(s)	254, 352
BsaJI	CCNNGG	1 cut(s)	351
BsaWI	WCCGGW	2 cut(s)	101, 286
Bse3DI	GCAATG	2 cut(s)	345, 376
BseDI	CCNNGG	1 cut(s)	351
BseMI	GCAATG	2 cut(s)	345, 376
BshFI	GGCC	2 cut(s)	13, 416
BshNI	GGYRCC	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	102, 287
BsmAI	GTCTC	4 cut(s)	97, 103, 254, 352
BsmBI	CGTCTC	1 cut(s)	103
BsnI	GGCC	2 cut(s)	13, 416
Bso31I	GGTCTC	2 cut(s)	254, 352
Bsp143I	GATC	1 cut(s)	339
BspACI	CCGC	3 cut(s)	130, 204, 247
BspANI	GGCC	2 cut(s)	13, 416
BspLI	GGNNCC	2 cut(s)	157, 173
BspT107I	GGYRCC	1 cut(s)	155
BspTNI	GGTCTC	2 cut(s)	254, 352
BsrDI	GCAATG	2 cut(s)	345, 376
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	1 cut(s)	339
BssNI	GRCGYC	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	28
BstACI	GRCGYC	1 cut(s)	78
BstBAI	YACGTR	1 cut(s)	328
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	69
BstKTI	GATC	1 cut(s)	342
BstMAI	GTCTC	4 cut(s)	97, 103, 254, 352
BstMBI	GATC	1 cut(s)	339
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	13, 416
BtgZI	GCGATG	1 cut(s)	407
BtrI	CACGTC	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	295
CseI	GACGC	1 cut(s)	100
CviJI	RGCY	5 cut(s)	13, 127, 235, 400, 416
CviKI_1	RGCY	5 cut(s)	13, 127, 235, 400, 416
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	1 cut(s)	341
DpnII	GATC	1 cut(s)	339
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
EciI	GGCGGA	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	351
Eco147I	AGGCCT	2 cut(s)	13, 416
Eco31I	GGTCTC	2 cut(s)	254, 352
Eco32I	GATATC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	295
Eco72I	CACGTG	1 cut(s)	328
EcoO109I	RGGNCCY	1 cut(s)	295
EcoRV	GATATC	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	103
FaiI	YATR	2 cut(s)	84, 243
FspBI	CTAG	1 cut(s)	418
HaeIII	GGCC	2 cut(s)	13, 416
HapII	CCGG	2 cut(s)	102, 287
HgaI	GACGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	78
HpaII	CCGG	2 cut(s)	102, 287
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	3 cut(s)	58, 142, 189
Hpy188I	TCNGA	1 cut(s)	339
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	3 cut(s)	58, 142, 189
Hpy99I	CGWCG	2 cut(s)	388, 391
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	3 cut(s)	54, 78, 327
HpyCH4V	TGCA	2 cut(s)	9, 304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	3 cut(s)	54, 78, 327
Hsp92I	GRCGYC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	339
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	3 cut(s)	115, 300, 314
MaeI	CTAG	1 cut(s)	418
MaeII	ACGT	3 cut(s)	54, 78, 327
MaeIII	GTNAC	2 cut(s)	104, 328
MalI	GATC	1 cut(s)	341
MboI	GATC	1 cut(s)	339
MboII	GAAGA	1 cut(s)	325
MnlI	CCTC	6 cut(s)	191, 203, 218, 227, 308, 406
MroXI	GAANNNNTTC	1 cut(s)	62
MspI	CCGG	2 cut(s)	102, 287
MwoI	GCNNNNNNNGC	1 cut(s)	255
NdeII	GATC	1 cut(s)	339
NlaIV	GGNNCC	2 cut(s)	157, 173
NmuCI	GTSAC	1 cut(s)	328
PceI	AGGCCT	2 cut(s)	13, 416
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 93, 389
PdmI	GAANNNNTTC	1 cut(s)	62
PmaCI	CACGTG	1 cut(s)	328
PmlI	CACGTG	1 cut(s)	328
Ppu21I	YACGTR	1 cut(s)	328
PpuMI	RGGWCCY	1 cut(s)	295
Psp5II	RGGWCCY	1 cut(s)	295
PspCI	CACGTG	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	157, 173
PspPI	GGNCC	1 cut(s)	295
PspPPI	RGGWCCY	1 cut(s)	295
Sau3AI	GATC	1 cut(s)	339
Sau96I	GGNCC	1 cut(s)	295
SinI	GGWCC	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SseBI	AGGCCT	2 cut(s)	13, 416
SsiI	CCGC	3 cut(s)	130, 204, 247
SspMI	CTAG	1 cut(s)	418
StuI	AGGCCT	2 cut(s)	13, 416
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	3 cut(s)	57, 81, 330
TaqI	TCGA	1 cut(s)	210
TseFI	GTSAC	1 cut(s)	328
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	1 cut(s)	410
TspGWI	ACGGA	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	295
XmnI	GAANNNNTTC	1 cut(s)	62
XspI	CTAG	1 cut(s)	418
ZraI	GACGTC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.