pycom12g20180

Protein kinase C conserved region 2 (CalB)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
21775021 .. 21776117
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g20180.1

Sequence Viewer

Length: 999 bp
ATGGATTGCAGGCCTCTGGAGGTAATCATCGACTCGGCCAACGGCCTCAAGGACGTCAACCTCTTCTCCAAGATGGACGTCTACGCCGTCGTTTCGGTCGCCGGCGACCCCCGCAACAGGAAGCAGAAGACCAAGACCCCCGTCGTCAAGGACGGCGGCACCAACCCCAAATGGAACAGCTACCCCATCAAGTTCACCGTCGACGAAGCCGCCCTCCTCCACAACCGCCTCACCCTCAACATCAAGCTCGTCTCCGAGCGCACTTTGGGAGACACCAAGATCGGCAAGGTCAAGATTCCGCTCAAGGAGCTGCTCGACAGCATGGGCGGCGGCGATGCTCAGAAGAAGCAGAGCAACCACGTCAGCTACAGCGTCCGATCGTCAAGCGGAAAGCCCAAGGGGACCATCAATTTCGGGTACAAATTTGGTGACAAGTTTTCGGTTCCGGAGCCCCAGAAGAAATCCCATGAGCCCGTGATGGCTTACCCTGTCGGACACCCCGGGTCAAGCTCCCGGGTACCTGCCCAAGCTTACTCATACCCGCAACCCGGTGCGTACCCACCACCGCCTCATCAGCAACCGGGTTACGGGTACGCACCACCGCCACAGGCCGCGTACGGATACCCGCCTCAGCCCGGGTATGGGTACCCGCCGCAGCAAGTTGTGCGGCCGCAGAAGCCTAAGAGGGGAGGAGGAAACATGGCGCTGGGTTTAGGAGCTGGGTTGCTGGGTGGATTGTTGATTGGGGATATGATTAGTGATCGTTTAACGTCTGTGATGCCGAACAAAGCGTATTTTTACTCTCCTTATCTCAACGGGTTTACCCTGATAACGATCCAAATCATTAACGAGTTCTTAACAAATGACTTAATAATGACTCGATTCGTTAATAGATTGACCAGAAACCTATTGTTCTTGTCAAATTGCCAAATCGTGCAAGAAATTATCAGGCTTACTCATTTCCCTATTTATTCATCGTTGGACCAATTCTTTCTTTAA

Protein Analysis

333

Amino Acids

36.6

Weight (kDa)

9.62

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 6 - 107 2.9e-14 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 57, 81
Acc36I ACCTGC 1 cut(s) 529
Acc65I GGTACC 2 cut(s) 517, 645
AccB1I GGYRCC 3 cut(s) 158, 517, 645
AccBSI CCGCTC 1 cut(s) 301
AccI GTMKAC 2 cut(s) 81, 201
AccII CGCG 1 cut(s) 614
AccIII TCCGGA 1 cut(s) 445
AclWI GGATC 1 cut(s) 829
AcoI YGGCCR 2 cut(s) 36, 668
AcsI RAATTY 1 cut(s) 422
AcyI GRCGYC 2 cut(s) 54, 78
AfaI GTAC 6 cut(s) 419, 519, 557, 593, 617, 647
AfiI CCNNNNNNNGG 7 cut(s) 117, 548, 587, 635, 641, 642, 686
AjiI CACGTC 1 cut(s) 361
AluBI AGCT 7 cut(s) 180, 247, 310, 366, 510, 530, 719
AluI AGCT 7 cut(s) 180, 247, 310, 366, 510, 530, 719
Alw26I GTCTC 2 cut(s) 256, 264
AlwI GGATC 1 cut(s) 829
Ama87I CYCGRG 3 cut(s) 500, 513, 635
Aor13HI TCCGGA 1 cut(s) 445
AoxI GGCC 5 cut(s) 11, 36, 43, 609, 668
ApeKI GCWGC 2 cut(s) 310, 655
ApoI RAATTY 1 cut(s) 422
Asp718I GGTACC 2 cut(s) 517, 645
AspLEI GCGC 2 cut(s) 261, 706
AspS9I GGNCC 2 cut(s) 402, 982
AsuC2I CCSGG 8 cut(s) 501, 502, 514, 515, 549, 582, 636, 637
AsuHPI GGTGA 3 cut(s) 187, 223, 440
AvaI CYCGRG 3 cut(s) 500, 513, 635
AvaII GGWCC 2 cut(s) 402, 982
BanI GGYRCC 3 cut(s) 158, 517, 645
BanII GRGCYC 2 cut(s) 453, 474
BbsI GAAGAC 1 cut(s) 134
BbvCI CCTCAGC 1 cut(s) 630
BbvI GCAGC 2 cut(s) 297, 667
BccI CCATC 4 cut(s) 67, 194, 413, 472
BceAI ACGGC 3 cut(s) 58, 71, 169
BciVI GTATCC 1 cut(s) 614
BcnI CCSGG 8 cut(s) 501, 502, 514, 515, 549, 582, 636, 637
BcoDI GTCTC 2 cut(s) 256, 264
BfmI CTRYAG 1 cut(s) 367
BfoI RGCGCY 1 cut(s) 707
BfuAI ACCTGC 1 cut(s) 529
BfuI GTATCC 1 cut(s) 614
Bme1390I CCNGG 8 cut(s) 501, 502, 514, 515, 549, 582, 636, 637
Bme18I GGWCC 2 cut(s) 402, 982
BmeT110I CYCGRG 3 cut(s) 500, 513, 635
BmgBI CACGTC 1 cut(s) 361
BmgT120I GGNCC 2 cut(s) 402, 982
BmiI GGNNCC 6 cut(s) 160, 403, 444, 450, 519, 647
BmrFI CCNGG 8 cut(s) 501, 502, 514, 515, 549, 582, 636, 637
BmsI GCATC 2 cut(s) 325, 768
BoxI GACNNNNGTC 1 cut(s) 140
BpiI GAAGAC 1 cut(s) 134
BpmI CTGGAG 1 cut(s) 38
Bpu10I CCTNAGC 1 cut(s) 630
BpuEI CTTGAG 2 cut(s) 32, 287
BpuMI CCSGG 8 cut(s) 501, 502, 514, 515, 549, 582, 636, 637
BsaBI GATNNNNATC 2 cut(s) 833, 839
BsaHI GRCGYC 2 cut(s) 54, 78
BsaJI CCNNGG 5 cut(s) 396, 499, 500, 513, 635
BsaWI WCCGGW 1 cut(s) 445
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 7 cut(s) 117, 548, 587, 635, 641, 642, 686
Bse118I RCCGGY 1 cut(s) 101
Bse8I GATNNNNATC 2 cut(s) 833, 839
BseAI TCCGGA 1 cut(s) 445
BseDI CCNNGG 5 cut(s) 396, 499, 500, 513, 635
BseJI GATNNNNATC 2 cut(s) 833, 839
BseLI CCNNNNNNNGG 7 cut(s) 117, 548, 587, 635, 641, 642, 686
BseMII CTCAG 2 cut(s) 353, 644
BseRI GAGGAG 2 cut(s) 206, 705
BseX3I CGGCCG 1 cut(s) 668
BseXI GCAGC 2 cut(s) 297, 667
BseYI CCCAGC 3 cut(s) 706, 719, 727
Bsh1236I CGCG 1 cut(s) 614
Bsh1285I CGRYCG 3 cut(s) 99, 380, 671
BshFI GGCC 5 cut(s) 13, 38, 45, 611, 670
BshNI GGYRCC 3 cut(s) 158, 517, 645
BsiEI CGRYCG 3 cut(s) 99, 380, 671
BsiHKCI CYCGRG 3 cut(s) 500, 513, 635
BsiSI CCGG 7 cut(s) 102, 446, 501, 514, 549, 581, 636
BsiWI CGTACG 1 cut(s) 615
BslFI GGGAC 1 cut(s) 415
BslI CCNNNNNNNGG 7 cut(s) 117, 548, 587, 635, 641, 642, 686
BsmAI GTCTC 2 cut(s) 256, 264
BsmBI CGTCTC 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 415
BsnI GGCC 5 cut(s) 13, 38, 45, 611, 670
BsoBI CYCGRG 3 cut(s) 500, 513, 635
Bsp1286I GDGCHC 2 cut(s) 453, 474
Bsp13I TCCGGA 1 cut(s) 445
Bsp143I GATC 4 cut(s) 279, 377, 760, 834
BspANI GGCC 5 cut(s) 13, 38, 45, 611, 670
BspCNI CTCAG 2 cut(s) 352, 643
BspEI TCCGGA 1 cut(s) 445
BspFNI CGCG 1 cut(s) 614
BspLI GGNNCC 6 cut(s) 160, 403, 444, 450, 519, 647
BspMI ACCTGC 1 cut(s) 529
BspPI GGATC 1 cut(s) 829
BspT107I GGYRCC 3 cut(s) 158, 517, 645
BsrBI CCGCTC 1 cut(s) 301
BsrFI RCCGGY 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 5 cut(s) 396, 499, 500, 513, 635
BssMI GATC 4 cut(s) 279, 377, 760, 834
BssNI GRCGYC 2 cut(s) 54, 78
BssT1I CCWWGG 1 cut(s) 396
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 68
BstACI GRCGYC 2 cut(s) 54, 78
BstAPI GCANNNNNTGC 1 cut(s) 664
BstC8I GCNNGC 2 cut(s) 11, 103
BstDEI CTNAG 3 cut(s) 339, 630, 681
BstFNI CGCG 1 cut(s) 614
BstH2I RGCGCY 1 cut(s) 707
BstHHI GCGC 2 cut(s) 261, 706
BstKTI GATC 4 cut(s) 282, 380, 763, 837
BstMAI GTCTC 2 cut(s) 256, 264
BstMBI GATC 4 cut(s) 279, 377, 760, 834
BstMCI CGRYCG 3 cut(s) 99, 380, 671
BstMWI GCNNNNNNNGC 6 cut(s) 111, 307, 327, 574, 664, 676
BstPAI GACNNNNGTC 1 cut(s) 140
BstSCI CCNGG 8 cut(s) 499, 500, 512, 513, 547, 580, 634, 635
BstSFI CTRYAG 1 cut(s) 367
BstUI CGCG 1 cut(s) 614
BstV1I GCAGC 2 cut(s) 297, 667
BstV2I GAAGAC 1 cut(s) 134
BstZI CGGCCG 1 cut(s) 668
BsuI GTATCC 1 cut(s) 614
BsuRI GGCC 5 cut(s) 13, 38, 45, 611, 670
BtgZI GCGATG 1 cut(s) 348
BtrI CACGTC 1 cut(s) 361
BveI ACCTGC 1 cut(s) 529
Cac8I GCNNGC 2 cut(s) 11, 103
CciNI GCGGCCGC 1 cut(s) 668
CfoI GCGC 2 cut(s) 261, 706
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 402, 982
Cfr9I CCCGGG 3 cut(s) 500, 513, 635
CseI GACGC 1 cut(s) 361
Csp6I GTAC 6 cut(s) 418, 518, 556, 592, 616, 646
CviAII CATG 3 cut(s) 322, 467, 700
CviQI GTAC 6 cut(s) 418, 518, 556, 592, 616, 646
DdeI CTNAG 3 cut(s) 339, 630, 681
DpnI GATC 4 cut(s) 281, 379, 762, 836
DpnII GATC 4 cut(s) 279, 377, 760, 834
EaeI YGGCCR 2 cut(s) 36, 668
EagI CGGCCG 1 cut(s) 668
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
EclXI CGGCCG 1 cut(s) 668
Eco130I CCWWGG 1 cut(s) 396
Eco147I AGGCCT 1 cut(s) 13
Eco24I GRGCYC 2 cut(s) 453, 474
Eco47I GGWCC 2 cut(s) 402, 982
Eco52I CGGCCG 1 cut(s) 668
Eco88I CYCGRG 3 cut(s) 500, 513, 635
EcoT14I CCWWGG 1 cut(s) 396
EcoT38I GRGCYC 2 cut(s) 453, 474
ErhI CCWWGG 1 cut(s) 396
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 3 cut(s) 325, 470, 703
FaiI YATR 6 cut(s) 323, 468, 538, 642, 701, 752
FaqI GGGAC 1 cut(s) 415
FatI CATG 3 cut(s) 321, 466, 699
FauI CCCGC 4 cut(s) 119, 549, 633, 657
FblI GTMKAC 2 cut(s) 81, 201
FriOI GRGCYC 2 cut(s) 453, 474
GlaI GCGC 2 cut(s) 260, 705
GsaI CCCAGC 3 cut(s) 710, 723, 731
GsuI CTGGAG 1 cut(s) 38
HaeII RGCGCY 1 cut(s) 707
HaeIII GGCC 5 cut(s) 13, 38, 45, 611, 670
HapII CCGG 7 cut(s) 102, 446, 501, 514, 549, 581, 636
HgaI GACGC 1 cut(s) 361
HhaI GCGC 2 cut(s) 261, 706
Hin1I GRCGYC 2 cut(s) 54, 78
Hin1II CATG 3 cut(s) 325, 470, 703
Hin6I GCGC 2 cut(s) 259, 704
HinP1I GCGC 2 cut(s) 259, 704
HincII GTYRAC 2 cut(s) 58, 202
HindII GTYRAC 2 cut(s) 58, 202
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 4 cut(s) 32, 295, 877, 882
HpaII CCGG 7 cut(s) 102, 446, 501, 514, 549, 581, 636
HphI GGTGA 3 cut(s) 187, 223, 440
Hpy166II GTNNAC 5 cut(s) 58, 82, 195, 202, 822
Hpy188I TCNGA 4 cut(s) 256, 342, 377, 494
Hpy188III TCNNGA 3 cut(s) 17, 292, 446
Hpy8I GTNNAC 5 cut(s) 58, 82, 195, 202, 822
Hpy99I CGWCG 4 cut(s) 92, 146, 203, 206
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 4 cut(s) 54, 78, 360, 770
HpyCH4V TGCA 2 cut(s) 9, 937
HpyF10VI GCNNNNNNNGC 6 cut(s) 111, 307, 327, 574, 664, 676
HpyF3I CTNAG 3 cut(s) 339, 630, 681
HpySE526I ACGT 4 cut(s) 54, 78, 360, 770
Hsp92I GRCGYC 2 cut(s) 54, 78
Hsp92II CATG 3 cut(s) 325, 470, 703
HspAI GCGC 2 cut(s) 259, 704
Kpn2I TCCGGA 1 cut(s) 445
KpnI GGTACC 2 cut(s) 521, 649
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Kzo9I GATC 4 cut(s) 279, 377, 760, 834
LmnI GCTCC 4 cut(s) 307, 448, 515, 716
Lsp1109I GCAGC 2 cut(s) 297, 667
LweI GCATC 2 cut(s) 325, 768
MaeII ACGT 4 cut(s) 54, 78, 360, 770
MaeIII GTNAC 2 cut(s) 428, 584
MalI GATC 4 cut(s) 281, 379, 762, 836
MbiI CCGCTC 1 cut(s) 301
MboI GATC 4 cut(s) 279, 377, 760, 834
MboII GAAGA 4 cut(s) 55, 139, 355, 469
MhlI GDGCHC 2 cut(s) 453, 474
MluCI AATT 5 cut(s) 409, 422, 922, 942, 986
MlyI GAGTC 2 cut(s) 26, 871
MmeI TCCRAC 2 cut(s) 472, 960
MreI CGCCGGCG 1 cut(s) 101
MroI TCCGGA 1 cut(s) 445
MroNI GCCGGC 1 cut(s) 101
MseI TTAA 6 cut(s) 767, 846, 857, 869, 888, 997
MspI CCGG 7 cut(s) 102, 446, 501, 514, 549, 581, 636
MspR9I CCNGG 8 cut(s) 501, 502, 514, 515, 549, 582, 636, 637
MvnI CGCG 1 cut(s) 614
MwoI GCNNNNNNNGC 6 cut(s) 111, 307, 327, 574, 664, 676
NaeI GCCGGC 1 cut(s) 103
NciI CCSGG 8 cut(s) 501, 502, 514, 515, 549, 582, 636, 637
NdeII GATC 4 cut(s) 279, 377, 760, 834
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 3 cut(s) 325, 470, 703
NlaIV GGNNCC 6 cut(s) 160, 403, 444, 450, 519, 647
NmeAIII GCCGAG 1 cut(s) 14
NmuCI GTSAC 1 cut(s) 428
NotI GCGGCCGC 1 cut(s) 668
PceI AGGCCT 1 cut(s) 13
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PdiI GCCGGC 1 cut(s) 103
PfeI GAWTC 2 cut(s) 295, 882
Pfl23II CGTACG 1 cut(s) 615
Ple19I CGATCG 1 cut(s) 380
PleI GAGTC 2 cut(s) 26, 871
PpsI GAGTC 2 cut(s) 26, 871
PshAI GACNNNNGTC 1 cut(s) 140
PspFI CCCAGC 3 cut(s) 706, 719, 727
PspLI CGTACG 1 cut(s) 615
PspN4I GGNNCC 6 cut(s) 160, 403, 444, 450, 519, 647
PspPI GGNCC 2 cut(s) 402, 982
PvuI CGATCG 1 cut(s) 380
RsaI GTAC 6 cut(s) 419, 519, 557, 593, 617, 647
RsaNI GTAC 6 cut(s) 418, 518, 556, 592, 616, 646
SalI GTCGAC 1 cut(s) 200
SaqAI TTAA 6 cut(s) 767, 846, 857, 869, 888, 997
Sau3AI GATC 4 cut(s) 279, 377, 760, 834
Sau96I GGNCC 2 cut(s) 402, 982
SchI GAGTC 2 cut(s) 26, 871
ScrFI CCNGG 8 cut(s) 501, 502, 514, 515, 549, 582, 636, 637
SduI GDGCHC 2 cut(s) 453, 474
SfaNI GCATC 2 cut(s) 325, 768
SfcI CTRYAG 1 cut(s) 367
SgrAI CRCCGGYG 1 cut(s) 101
SgrDI CGTCGACG 1 cut(s) 200
SinI GGWCC 2 cut(s) 402, 982
SmaI CCCGGG 3 cut(s) 502, 515, 637
SmlI CTYRAG 2 cut(s) 47, 302
SmoI CTYRAG 2 cut(s) 47, 302
Sse9I AATT 5 cut(s) 409, 422, 922, 942, 986
SseBI AGGCCT 1 cut(s) 13
StuI AGGCCT 1 cut(s) 13
StyD4I CCNGG 8 cut(s) 499, 500, 512, 513, 547, 580, 634, 635
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 4 cut(s) 57, 81, 363, 773
TaqI TCGA 4 cut(s) 30, 201, 315, 880
TaqII GACCGA 1 cut(s) 85
TasI AATT 5 cut(s) 409, 422, 922, 942, 986
TauI GCSGC 8 cut(s) 159, 212, 330, 333, 614, 655, 670, 673
TfiI GAWTC 2 cut(s) 295, 882
Tru1I TTAA 6 cut(s) 767, 846, 857, 869, 888, 997
Tru9I TTAA 6 cut(s) 767, 846, 857, 869, 888, 997
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 2 cut(s) 310, 655
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 1 cut(s) 963
TspGWI ACGGA 1 cut(s) 633
TspMI CCCGGG 3 cut(s) 500, 513, 635
VpaK11BI GGWCC 2 cut(s) 402, 982
XapI RAATTY 1 cut(s) 422
XmaI CCCGGG 3 cut(s) 500, 513, 635
XmiI GTMKAC 2 cut(s) 81, 201
ZraI GACGTC 2 cut(s) 55, 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.