Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001785

Physical Location & Seq

Genomic Coordinates Reverse (-)

42029500 .. 42030109

Gene Structure 610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025110

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAACGTCTACGCCGTCGTTTCGATCACCGGCGGAGCCAAGAAGCAGAAGCTCAAGACCCCTGTCCACAAGGGCGGCGGCACCAATCCCAAGTGGAACCACTCCCTCAAGTTCACGCTCGACGATGCAGCTCTCAACCAGGACCACCTCAAAGTCGAGATTCAGCTCGTCTCAGACCGCACCCTCCGCGATACCAAGATCGGAAAAGTCGTTATTCCGGCAAAGGAGTTGCTTCGGTATTCTGGTACGGACGTGAGCTACCAGCTAGTGACGCGCAAGGGGAGATCCAAAGGGAGCGTCAGCTTTAGGTACAAGTTGGGCGAGAAATACTGGGTTGAGCCCGAGCCAGAACCCGAGCCCGTCATGGCTTACCCCGCCGCGAGTTATGGAAACCCGCCAGTTGTGCAGCGGCCGAAGAAGTCAAAAAAAGGAAATCTGACGCATGGTTTGTTTGCTTTGATAATTATGGGTGGATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

Protein Analysis

160

Amino Acids

17.61

Weight (kDa)

9.93

Isoelectric Point (pI)

25.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	1 - 89	8e-13	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09070
fragaria_vesca	FvH4_6g06320 FvH4_6g06320 FvH4_6g06321
malus_domestica	MD04G1202300.v1.1 MD12G1216300.v1.1
prunus_persica	Prupe.6G322500_v2.0.a1 Prupe.6G322500_v2.0.a1 Prupe.6G322600_v2.0.a1
pyrus_communis	pycom04g17850 pycom12g20180
rosa_chinensis	RchiOBHm_Chr3g0455361 RchiOBHm_Chr3g0455371
rosa_laevigata	RLG00000025110 RLG00000025366
rosa_multiflora	Rmu_co8331519.1_g000001 Rmu_sc0002169.1_g000048 Rmu_sc0002169.1_g000049 Rmu_sc0002435.1_g000019 Rmu_sc0003222.1_g000014 Rmu_sc0004087.1_g000009 Rmu_sc0004343.1_g000002 Rmu_sc0004894.1_g000012 Rmu_sc0012909.1_g000009 Rmu_sc0024960.1_g000001 Rmu_sc0038181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379190 Rroxscaffold_6G00420510 Rroxscaffold_6G00424320 Rroxscaffold_6G00424330
rosa_rugosa	Rorug03G0006800 Rorug03G0006900 Rorug03G0033900 Rorug03G0287400
rosa_samantha	Rh3AG066400 Rh3AG066500 Rh3AG091800 Rh3BG068700 Rh3BG068800 Rh3CG067100 Rh3CG067200 Rh3CG095600 Rh3DG068600 Rh4BG236100
rosa_wichuraiana	Rw3G005240 Rw3G005250 Rw7G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	9
AccII	CGCG	3 cut(s)	189, 274, 380
AciI	CCGC	9 cut(s)	33, 75, 78, 178, 187, 375, 378, 395, 409
AclWI	GGATC	1 cut(s)	279
AcoI	YGGCCR	1 cut(s)	410
AfaI	GTAC	2 cut(s)	247, 311
AjiI	CACGTC	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	6 cut(s)	52, 131, 166, 258, 265, 303
AluI	AGCT	6 cut(s)	52, 131, 166, 258, 265, 303
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	279
Ama87I	CYCGRG	2 cut(s)	341, 353
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	2 cut(s)	128, 406
ArsI	GACNNNNNNTTYG	4 cut(s)	282, 314, 430, 462
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	19
AvaI	CYCGRG	2 cut(s)	341, 353
AvaII	GGWCC	1 cut(s)	142
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BanI	GGYRCC	1 cut(s)	80
BanII	GRGCYC	2 cut(s)	342, 360
BbvI	GCAGC	2 cut(s)	140, 418
BciT130I	CCWGG	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	2 cut(s)	266, 478
BisI	GCNGC	6 cut(s)	76, 79, 129, 378, 407, 410
BlsI	GCNGC	6 cut(s)	77, 80, 130, 379, 408, 411
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	1 cut(s)	142
BmeT110I	CYCGRG	2 cut(s)	341, 353
BmgBI	CACGTC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	3 cut(s)	37, 82, 98
BmrFI	CCNGG	1 cut(s)	140
BmrI	ACTGGG	1 cut(s)	340
BmsI	GCATC	1 cut(s)	115
BmuI	ACTGGG	1 cut(s)	340
BoxI	GACNNNNGTC	1 cut(s)	62
BpuEI	CTTGAG	2 cut(s)	38, 92
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	335, 398
BseBI	CCWGG	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	335, 398
BseX3I	CGGCCG	1 cut(s)	410
BseXI	GCAGC	2 cut(s)	140, 418
BsgI	GTGCAG	1 cut(s)	425
Bsh1236I	CGCG	3 cut(s)	189, 274, 380
Bsh1285I	CGRYCG	1 cut(s)	413
BshFI	GGCC	1 cut(s)	412
BshNI	GGYRCC	1 cut(s)	80
BsiEI	CGRYCG	1 cut(s)	413
BsiHKCI	CYCGRG	2 cut(s)	341, 353
BsiSI	CCGG	2 cut(s)	30, 218
BsmAI	GTCTC	1 cut(s)	175
BsmBI	CGTCTC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	412
BsoBI	CYCGRG	2 cut(s)	341, 353
Bsp1286I	GDGCHC	2 cut(s)	342, 360
Bsp143I	GATC	3 cut(s)	24, 198, 284
BspACI	CCGC	9 cut(s)	33, 75, 78, 178, 187, 375, 378, 395, 409
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	1 cut(s)	185
BspFNI	CGCG	3 cut(s)	189, 274, 380
BspLI	GGNNCC	3 cut(s)	37, 82, 98
BspPI	GGATC	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	2 cut(s)	335, 398
BssAI	RCCGGY	1 cut(s)	29
BssMI	GATC	3 cut(s)	24, 198, 284
Bst2UI	CCWGG	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	172
BstFNI	CGCG	3 cut(s)	189, 274, 380
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	3 cut(s)	27, 201, 287
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	3 cut(s)	24, 198, 284
BstMCI	CGRYCG	1 cut(s)	413
BstMWI	GCNNNNNNNGC	4 cut(s)	186, 271, 374, 403
BstNI	CCWGG	1 cut(s)	140
BstPAI	GACNNNNGTC	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	138
BstUI	CGCG	3 cut(s)	189, 274, 380
BstV1I	GCAGC	2 cut(s)	140, 418
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
BstZI	CGGCCG	1 cut(s)	410
BsuRI	GGCC	1 cut(s)	412
BtrI	CACGTC	1 cut(s)	253
CfoI	GCGC	1 cut(s)	276
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	142
CseI	GACGC	3 cut(s)	280, 286, 448
Csp6I	GTAC	2 cut(s)	246, 310
CviAII	CATG	2 cut(s)	364, 443
CviQI	GTAC	2 cut(s)	246, 310
DdeI	CTNAG	1 cut(s)	172
DpnI	GATC	3 cut(s)	26, 200, 286
DpnII	GATC	3 cut(s)	24, 198, 284
EaeI	YGGCCR	1 cut(s)	410
EagI	CGGCCG	1 cut(s)	410
EciI	GGCGGA	1 cut(s)	48
EclXI	CGGCCG	1 cut(s)	410
Eco24I	GRGCYC	2 cut(s)	342, 360
Eco47I	GGWCC	1 cut(s)	142
Eco52I	CGGCCG	1 cut(s)	410
Eco88I	CYCGRG	2 cut(s)	341, 353
EcoRII	CCWGG	1 cut(s)	138
EcoT38I	GRGCYC	2 cut(s)	342, 360
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	2 cut(s)	367, 446
FaiI	YATR	4 cut(s)	365, 387, 444, 467
FatI	CATG	2 cut(s)	363, 442
FauI	CCCGC	2 cut(s)	382, 402
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	6 cut(s)	76, 79, 129, 378, 407, 410
FriOI	GRGCYC	2 cut(s)	342, 360
Fsp4HI	GCNGC	6 cut(s)	76, 79, 129, 378, 407, 410
FspBI	CTAG	2 cut(s)	266, 478
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	6 cut(s)	76, 79, 129, 378, 407, 410
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	2 cut(s)	30, 218
HgaI	GACGC	3 cut(s)	280, 286, 448
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	2 cut(s)	367, 446
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HinfI	GANTC	2 cut(s)	160, 474
HpaII	CCGG	2 cut(s)	30, 218
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	3 cut(s)	10, 67, 114
Hpy188I	TCNGA	3 cut(s)	175, 203, 438
Hpy188III	TCNNGA	2 cut(s)	55, 157
Hpy8I	GTNNAC	3 cut(s)	10, 67, 114
Hpy99I	CGWCG	2 cut(s)	20, 125
HpyCH4IV	ACGT	2 cut(s)	6, 252
HpyCH4V	TGCA	2 cut(s)	128, 406
HpyF10VI	GCNNNNNNNGC	4 cut(s)	186, 271, 374, 403
HpyF3I	CTNAG	1 cut(s)	172
HpySE526I	ACGT	2 cut(s)	6, 252
Hsp92II	CATG	2 cut(s)	367, 446
HspAI	GCGC	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	24, 198, 284
LmnI	GCTCC	2 cut(s)	35, 294
Lsp1109I	GCAGC	2 cut(s)	140, 418
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	2 cut(s)	266, 478
MaeII	ACGT	2 cut(s)	6, 252
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	3 cut(s)	26, 200, 286
MboI	GATC	3 cut(s)	24, 198, 284
MboII	GAAGA	1 cut(s)	427
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	2 cut(s)	342, 360
MluCI	AATT	1 cut(s)	462
MnlI	CCTC	3 cut(s)	116, 158, 194
MspA1I	CMGCKG	1 cut(s)	409
MspI	CCGG	2 cut(s)	30, 218
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
MvnI	CGCG	3 cut(s)	189, 274, 380
MwoI	GCNNNNNNNGC	4 cut(s)	186, 271, 374, 403
NdeII	GATC	3 cut(s)	24, 198, 284
NlaIII	CATG	2 cut(s)	367, 446
NlaIV	GGNNCC	3 cut(s)	37, 82, 98
NmuCI	GTSAC	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	2 cut(s)	12, 207
PfeI	GAWTC	2 cut(s)	160, 474
PkrI	GCNGC	6 cut(s)	77, 80, 130, 379, 408, 411
PshAI	GACNNNNGTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	3 cut(s)	37, 82, 98
PspPI	GGNCC	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	284
RsaI	GTAC	2 cut(s)	247, 311
RsaNI	GTAC	2 cut(s)	246, 310
SatI	GCNGC	6 cut(s)	76, 79, 129, 378, 407, 410
Sau3AI	GATC	3 cut(s)	24, 198, 284
Sau96I	GGNCC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	2 cut(s)	342, 360
SfaNI	GCATC	1 cut(s)	115
SgrAI	CRCCGGYG	1 cut(s)	29
SinI	GGWCC	1 cut(s)	142
SmlI	CTYRAG	2 cut(s)	53, 107
SmoI	CTYRAG	2 cut(s)	53, 107
Sse9I	AATT	1 cut(s)	462
SsiI	CCGC	9 cut(s)	33, 75, 78, 178, 187, 375, 378, 395, 409
SspMI	CTAG	2 cut(s)	266, 478
StyD4I	CCNGG	1 cut(s)	138
TaiI	ACGT	2 cut(s)	9, 255
TaqI	TCGA	3 cut(s)	23, 120, 156
TasI	AATT	1 cut(s)	462
TauI	GCSGC	4 cut(s)	78, 81, 380, 412
TfiI	GAWTC	2 cut(s)	160, 474
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	2 cut(s)	128, 406
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	9
XspI	CTAG	2 cut(s)	266, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.