Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001785

Physical Location & Seq

Genomic Coordinates Forward (+)

59657733 .. 59659157

Gene Structure 1425 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGAAATACATCCTGTGCTTCCAATTTTCAAGCGTCAAGAAGCAAAAGCTCGCACCCCTGTCCACAAAGATGCCGGCACCAACCCAAAATGGAACCACACCCTCAAGTTCACCCTCGACAACTCCGCCCTCAATCACCTCCAAATCAAAATCAAGCTCATCTGTGACCGCACCTTCGGCGAGACCAAGATCGAAAATGTCGTAGTTCTAGTTAAGGACCTCCTGCAAAATGAGAAGAACGACAAGCACGTGACGATCCGGTCATCACGCAAGGGGAGACCTAAAGGCAATGAGATGAGAACGACAACGACGACGAAGCCGCAAATGATGGAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

Protein Analysis

112

Amino Acids

12.9

Weight (kDa)

10.0

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	11 - 83	1.6e-07	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09070
fragaria_vesca	FvH4_6g06320 FvH4_6g06320 FvH4_6g06321
malus_domestica	MD04G1202300.v1.1 MD12G1216300.v1.1
prunus_persica	Prupe.6G322500_v2.0.a1 Prupe.6G322500_v2.0.a1 Prupe.6G322600_v2.0.a1
pyrus_communis	pycom04g17850 pycom12g20180
rosa_chinensis	RchiOBHm_Chr3g0455361 RchiOBHm_Chr3g0455371
rosa_laevigata	RLG00000025110 RLG00000025366
rosa_multiflora	Rmu_co8331519.1_g000001 Rmu_sc0002169.1_g000048 Rmu_sc0002169.1_g000049 Rmu_sc0002435.1_g000019 Rmu_sc0003222.1_g000014 Rmu_sc0004087.1_g000009 Rmu_sc0004343.1_g000002 Rmu_sc0004894.1_g000012 Rmu_sc0012909.1_g000009 Rmu_sc0024960.1_g000001 Rmu_sc0038181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379190 Rroxscaffold_6G00420510 Rroxscaffold_6G00424320 Rroxscaffold_6G00424330
rosa_rugosa	Rorug03G0006800 Rorug03G0006900 Rorug03G0033900 Rorug03G0287400
rosa_samantha	Rh3AG066400 Rh3AG066500 Rh3AG091800 Rh3BG068700 Rh3BG068800 Rh3CG067100 Rh3CG067200 Rh3CG095600 Rh3DG068600 Rh4BG236100
rosa_wichuraiana	Rw3G005240 Rw3G005250 Rw7G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	259
AccB1I	GGYRCC	1 cut(s)	77
AciI	CCGC	3 cut(s)	126, 169, 320
AclWI	GGATC	1 cut(s)	250
AcvI	CACGTG	1 cut(s)	250
AgsI	TTSAA	1 cut(s)	31
AluBI	AGCT	2 cut(s)	50, 157
AluI	AGCT	2 cut(s)	50, 157
Alw26I	GTCTC	2 cut(s)	176, 271
AlwI	GGATC	1 cut(s)	250
AoxI	GGCC	1 cut(s)	333
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AspS9I	GGNCC	1 cut(s)	217
AsuHPI	GGTGA	2 cut(s)	103, 128
AvaII	GGWCC	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	77
BbrPI	CACGTG	1 cut(s)	250
BccI	CCATC	1 cut(s)	322
BcoDI	GTCTC	2 cut(s)	176, 271
BfaI	CTAG	2 cut(s)	209, 337
BisI	GCNGC	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	2 cut(s)	79, 95
BmsI	GCATC	1 cut(s)	61
BpuEI	CTTGAG	1 cut(s)	89
BsaAI	YACGTR	1 cut(s)	250
BsaI	GGTCTC	2 cut(s)	176, 271
BsaWI	WCCGGW	1 cut(s)	258
Bse118I	RCCGGY	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	295
BseGI	GGATG	1 cut(s)	10
BseMI	GCAATG	1 cut(s)	295
BshFI	GGCC	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	75, 259
BsmAI	GTCTC	2 cut(s)	176, 271
BsnI	GGCC	1 cut(s)	335
Bso31I	GGTCTC	2 cut(s)	176, 271
Bsp143I	GATC	2 cut(s)	189, 255
BspACI	CCGC	3 cut(s)	126, 169, 320
BspANI	GGCC	1 cut(s)	335
BspLI	GGNNCC	2 cut(s)	79, 95
BspPI	GGATC	1 cut(s)	250
BspT107I	GGYRCC	1 cut(s)	77
BspTNI	GGTCTC	2 cut(s)	176, 271
BsrDI	GCAATG	1 cut(s)	295
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssMI	GATC	2 cut(s)	189, 255
BstBAI	YACGTR	1 cut(s)	250
BstC8I	GCNNGC	2 cut(s)	52, 76
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	192, 258
BstMAI	GTCTC	2 cut(s)	176, 271
BstMBI	GATC	2 cut(s)	189, 255
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	335
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	2 cut(s)	52, 76
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	217
CseI	GACGC	1 cut(s)	23
CviJI	RGCY	4 cut(s)	50, 157, 319, 335
CviKI_1	RGCY	4 cut(s)	50, 157, 319, 335
DpnI	GATC	2 cut(s)	191, 257
DpnII	GATC	2 cut(s)	189, 255
DrdI	GACNNNNNNGTC	1 cut(s)	259
DseDI	GACNNNNNNGTC	1 cut(s)	259
EciI	GGCGGA	1 cut(s)	115
Eco147I	AGGCCT	1 cut(s)	335
Eco31I	GGTCTC	2 cut(s)	176, 271
Eco47I	GGWCC	1 cut(s)	217
Eco72I	CACGTG	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	217
Fnu4HI	GCNGC	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	320
FspBI	CTAG	2 cut(s)	209, 337
GluI	GCNGC	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	2 cut(s)	75, 259
HgaI	GACGC	1 cut(s)	23
HpaII	CCGG	2 cut(s)	75, 259
HphI	GGTGA	2 cut(s)	103, 128
Hpy166II	GTNNAC	2 cut(s)	64, 111
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	2 cut(s)	64, 111
Hpy99I	CGWCG	2 cut(s)	313, 316
HpyAV	CCTTC	1 cut(s)	184
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	249
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	189, 255
LpnPI	CCDG	5 cut(s)	27, 72, 88, 236, 272
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	2 cut(s)	209, 337
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	2 cut(s)	164, 250
MalI	GATC	2 cut(s)	191, 257
MboI	GATC	2 cut(s)	189, 255
MboII	GAAGA	1 cut(s)	247
MluCI	AATT	1 cut(s)	24
MnlI	CCTC	6 cut(s)	113, 125, 140, 149, 230, 325
MroNI	GCCGGC	1 cut(s)	74
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	69
MspI	CCGG	2 cut(s)	75, 259
MwoI	GCNNNNNNNGC	1 cut(s)	177
NaeI	GCCGGC	1 cut(s)	76
NdeII	GATC	2 cut(s)	189, 255
NgoMIV	GCCGGC	1 cut(s)	74
NlaIV	GGNNCC	2 cut(s)	79, 95
NmuCI	GTSAC	2 cut(s)	164, 250
PceI	AGGCCT	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	3 cut(s)	198, 246, 308
PdiI	GCCGGC	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	321
PmaCI	CACGTG	1 cut(s)	250
PmlI	CACGTG	1 cut(s)	250
Ppu21I	YACGTR	1 cut(s)	250
PpuMI	RGGWCCY	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	217
PspCI	CACGTG	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	79, 95
PspPI	GGNCC	1 cut(s)	217
PspPPI	RGGWCCY	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	1 cut(s)	320
Sau3AI	GATC	2 cut(s)	189, 255
Sau96I	GGNCC	1 cut(s)	217
SetI	ASST	7 cut(s)	52, 141, 159, 176, 222, 252, 283
SfaNI	GCATC	1 cut(s)	61
SinI	GGWCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	24
SseBI	AGGCCT	1 cut(s)	335
SsiI	CCGC	3 cut(s)	126, 169, 320
SspMI	CTAG	2 cut(s)	209, 337
StuI	AGGCCT	1 cut(s)	335
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	117, 192
TasI	AATT	1 cut(s)	24
TauI	GCSGC	1 cut(s)	322
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseFI	GTSAC	2 cut(s)	164, 250
Tsp45I	GTSAC	2 cut(s)	164, 250
VpaK11BI	GGWCC	1 cut(s)	217
XspI	CTAG	2 cut(s)	209, 337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.