Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001785

Physical Location & Seq

Genomic Coordinates Forward (+)

2723944 .. 2724670

Gene Structure 727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0033900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAGCAGCATCACCGAAACACCAACTTTTGAAGTTCAAGTTCATCAAAAAAGAACAGACTACTACAGAAGCAGTGCCGGCATGGACATACTTCCGATCAGATTCAAACTGGCCCAGGTAATTGTAAATTACAATCCAAGCATCCAGGGTTATGATTTTGAACCTCCAATTATATTATCTAGACATATTCTTAAGCTGCGGTTCTCGAGGGAGAGGGTGAGTGGGAGTGGGAGTGCAGAGATAACGATGAAAAGGGTCATAGCTAGGTCTCCAACGGAAATGGACGAGTTACAGATGAAGCTGGCTAGAGATACGAAGGAATCCATGCACTTAAACGTGGAAGACAATTACTACAGGCTCAAGCTTATTCCGGCAACTGAAGCATTCATTCAAGGTTTGGAGCAAGTGAGACTCGTTGAGCATGATAGTCTGGAAATGCTTGGTCTGGAGACATCTTGTGCTATTTGTGTGGATGCCTTTGGCGGACACAAGAGATCGAGATCACCATCTCTTGGTCGCCCTGCTTACATTATTATCATCAACATTGCATTGTCGAGTGGCTCAGGATCAATCACGTCTGTCCCATTTGCCGGCACCCTAATGACCCCATGCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

Protein Analysis

205

Amino Acids

22.94

Weight (kDa)

7.75

Isoelectric Point (pI)

61.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09070
fragaria_vesca	FvH4_6g06320 FvH4_6g06320 FvH4_6g06321
malus_domestica	MD04G1202300.v1.1 MD12G1216300.v1.1
prunus_persica	Prupe.6G322500_v2.0.a1 Prupe.6G322500_v2.0.a1 Prupe.6G322600_v2.0.a1
pyrus_communis	pycom04g17850 pycom12g20180
rosa_chinensis	RchiOBHm_Chr3g0455361 RchiOBHm_Chr3g0455371
rosa_laevigata	RLG00000025110 RLG00000025366
rosa_multiflora	Rmu_co8331519.1_g000001 Rmu_sc0002169.1_g000048 Rmu_sc0002169.1_g000049 Rmu_sc0002435.1_g000019 Rmu_sc0003222.1_g000014 Rmu_sc0004087.1_g000009 Rmu_sc0004343.1_g000002 Rmu_sc0004894.1_g000012 Rmu_sc0012909.1_g000009 Rmu_sc0024960.1_g000001 Rmu_sc0038181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379190 Rroxscaffold_6G00420510 Rroxscaffold_6G00424320 Rroxscaffold_6G00424330
rosa_rugosa	Rorug03G0006800 Rorug03G0006900 Rorug03G0033900 Rorug03G0287400
rosa_samantha	Rh3AG066400 Rh3AG066500 Rh3AG091800 Rh3BG068700 Rh3BG068800 Rh3CG067100 Rh3CG067200 Rh3CG095600 Rh3DG068600 Rh4BG236100
rosa_wichuraiana	Rw3G005240 Rw3G005250 Rw7G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	593
AccB7I	CCANNNNNTGG	1 cut(s)	512
AciI	CCGC	2 cut(s)	199, 483
AclWI	GGATC	1 cut(s)	574
AcuI	CTGAAG	1 cut(s)	399
AfiI	CCNNNNNNNGG	2 cut(s)	512, 590
AflII	CTTAAG	1 cut(s)	191
AgsI	TTSAA	5 cut(s)	32, 38, 106, 161, 392
AjiI	CACGTC	1 cut(s)	576
AjnI	CCWGG	2 cut(s)	114, 144
AluBI	AGCT	4 cut(s)	196, 263, 301, 364
AluI	AGCT	4 cut(s)	196, 263, 301, 364
Alw26I	GTCTC	3 cut(s)	273, 403, 443
AlwI	GGATC	1 cut(s)	574
Ama87I	CYCGRG	1 cut(s)	205
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	2 cut(s)	6, 196
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	3 cut(s)	4, 229, 495
AvaI	CYCGRG	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	593
BbsI	GAAGAC	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	18, 183
BccI	CCATC	1 cut(s)	514
BciT130I	CCWGG	2 cut(s)	116, 146
BcoDI	GTCTC	3 cut(s)	273, 403, 443
BfaI	CTAG	3 cut(s)	180, 264, 306
BfmI	CTRYAG	2 cut(s)	64, 352
BfrI	CTTAAG	1 cut(s)	191
BisI	GCNGC	2 cut(s)	7, 197
BlsI	GCNGC	2 cut(s)	8, 198
Bme1390I	CCNGG	2 cut(s)	116, 146
BmeT110I	CYCGRG	1 cut(s)	205
BmgBI	CACGTC	1 cut(s)	576
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	595
BmrFI	CCNGG	2 cut(s)	116, 146
BmsI	GCATC	3 cut(s)	18, 150, 463
BpiI	GAAGAC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	467
Bpu10I	CCTNAGC	1 cut(s)	562
BpuEI	CTTGAG	1 cut(s)	344
BsaBI	GATNNNNATC	2 cut(s)	499, 505
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	114, 145
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	2 cut(s)	512, 590
Bse118I	RCCGGY	2 cut(s)	77, 590
Bse1I	ACTGG	2 cut(s)	114, 613
Bse3DI	GCAATG	1 cut(s)	543
Bse8I	GATNNNNATC	2 cut(s)	499, 505
BseBI	CCWGG	2 cut(s)	116, 146
BseDI	CCNNGG	2 cut(s)	114, 145
BseGI	GGATG	2 cut(s)	141, 478
BseJI	GATNNNNATC	2 cut(s)	499, 505
BseLI	CCNNNNNNNGG	2 cut(s)	512, 590
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	2 cut(s)	114, 613
BseXI	GCAGC	2 cut(s)	18, 183
BsgI	GTGCAG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	113
BshNI	GGYRCC	1 cut(s)	593
BsiHKCI	CYCGRG	1 cut(s)	205
BsiSI	CCGG	3 cut(s)	78, 371, 591
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	2 cut(s)	512, 590
BsmAI	GTCTC	3 cut(s)	273, 403, 443
BsmFI	GGGAC	1 cut(s)	566
BsmI	GAATGC	1 cut(s)	383
BsnI	GGCC	1 cut(s)	113
Bso31I	GGTCTC	1 cut(s)	273
BsoBI	CYCGRG	1 cut(s)	205
Bsp143I	GATC	4 cut(s)	96, 494, 500, 566
BspACI	CCGC	2 cut(s)	199, 483
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	575
BspLI	GGNNCC	1 cut(s)	595
BspPI	GGATC	1 cut(s)	574
BspT107I	GGYRCC	1 cut(s)	593
BspTI	CTTAAG	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	543
BsrFI	RCCGGY	2 cut(s)	77, 590
BsrI	ACTGG	2 cut(s)	114, 613
BssAI	RCCGGY	2 cut(s)	77, 590
BssECI	CCNNGG	2 cut(s)	114, 145
BssMI	GATC	4 cut(s)	96, 494, 500, 566
Bst2UI	CCWGG	2 cut(s)	116, 146
BstAFI	CTTAAG	1 cut(s)	191
BstC8I	GCNNGC	3 cut(s)	79, 303, 592
BstDEI	CTNAG	1 cut(s)	562
BstF5I	GGATG	2 cut(s)	141, 478
BstKTI	GATC	4 cut(s)	99, 497, 503, 569
BstMAI	GTCTC	3 cut(s)	273, 403, 443
BstMBI	GATC	4 cut(s)	96, 494, 500, 566
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 380
BstNI	CCWGG	2 cut(s)	116, 146
BstSCI	CCNGG	2 cut(s)	114, 144
BstSFI	CTRYAG	2 cut(s)	64, 352
BstV1I	GCAGC	2 cut(s)	18, 183
BstV2I	GAAGAC	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	113
BtrI	CACGTC	1 cut(s)	576
BtsCI	GGATG	2 cut(s)	141, 478
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	79
Cac8I	GCNNGC	3 cut(s)	79, 303, 592
Cfr10I	RCCGGY	2 cut(s)	77, 590
Cfr13I	GGNCC	1 cut(s)	112
CviAII	CATG	4 cut(s)	82, 325, 422, 609
CviJI	RGCY	8 cut(s)	113, 196, 263, 301, 305, 358, 364, 561
CviKI_1	RGCY	8 cut(s)	113, 196, 263, 301, 305, 358, 364, 561
DdeI	CTNAG	1 cut(s)	562
DpnI	GATC	4 cut(s)	98, 496, 502, 568
DpnII	GATC	4 cut(s)	96, 494, 500, 566
EciI	GGCGGA	1 cut(s)	498
Eco31I	GGTCTC	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	399
Eco88I	CYCGRG	1 cut(s)	205
EcoRII	CCWGG	2 cut(s)	114, 144
FaeI	CATG	4 cut(s)	85, 328, 425, 612
FaiI	YATR	9 cut(s)	83, 89, 153, 173, 186, 260, 326, 423, 610
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	4 cut(s)	81, 324, 421, 608
Fnu4HI	GCNGC	2 cut(s)	7, 197
FokI	GGATG	2 cut(s)	128, 485
Fsp4HI	GCNGC	2 cut(s)	7, 197
FspBI	CTAG	3 cut(s)	180, 264, 306
GluI	GCNGC	2 cut(s)	7, 197
GsuI	CTGGAG	1 cut(s)	467
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	3 cut(s)	78, 371, 591
Hin1II	CATG	4 cut(s)	85, 328, 425, 612
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	3 cut(s)	102, 320, 411
HpaII	CCGG	3 cut(s)	78, 371, 591
HphI	GGTGA	3 cut(s)	4, 229, 495
Hpy188I	TCNGA	2 cut(s)	96, 101
Hpy188III	TCNNGA	6 cut(s)	180, 205, 431, 446, 498, 564
HpyAV	CCTTC	1 cut(s)	310
HpyCH4IV	ACGT	2 cut(s)	336, 575
HpyCH4V	TGCA	3 cut(s)	236, 328, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 380
HpyF3I	CTNAG	1 cut(s)	562
HpySE526I	ACGT	2 cut(s)	336, 575
Hsp92II	CATG	4 cut(s)	85, 328, 425, 612
KroI	GCCGGC	2 cut(s)	77, 590
KroNI	GCCGGC	2 cut(s)	79, 592
Kzo9I	GATC	4 cut(s)	96, 494, 500, 566
LmnI	GCTCC	1 cut(s)	400
Lsp1109I	GCAGC	2 cut(s)	18, 183
LweI	GCATC	3 cut(s)	18, 150, 463
MaeI	CTAG	3 cut(s)	180, 264, 306
MaeII	ACGT	2 cut(s)	336, 575
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	4 cut(s)	98, 496, 502, 568
MboI	GATC	4 cut(s)	96, 494, 500, 566
MboII	GAAGA	1 cut(s)	353
MluCI	AATT	4 cut(s)	120, 127, 168, 346
MlyI	GAGTC	1 cut(s)	405
MmeI	TCCRAC	1 cut(s)	296
MnlI	CCTC	3 cut(s)	174, 201, 207
MroNI	GCCGGC	2 cut(s)	77, 590
MseI	TTAA	2 cut(s)	192, 332
MslI	CAYNNNNRTG	1 cut(s)	599
MspCI	CTTAAG	1 cut(s)	191
MspI	CCGG	3 cut(s)	78, 371, 591
MspR9I	CCNGG	2 cut(s)	116, 146
Mva1269I	GAATGC	1 cut(s)	383
MvaI	CCWGG	2 cut(s)	116, 146
MwoI	GCNNNNNNNGC	2 cut(s)	78, 380
NaeI	GCCGGC	2 cut(s)	79, 592
NdeII	GATC	4 cut(s)	96, 494, 500, 566
NgoMIV	GCCGGC	2 cut(s)	77, 590
NlaIII	CATG	4 cut(s)	85, 328, 425, 612
NlaIV	GGNNCC	1 cut(s)	595
PaeR7I	CTCGAG	1 cut(s)	205
PctI	GAATGC	1 cut(s)	383
PdiI	GCCGGC	2 cut(s)	79, 592
PfeI	GAWTC	2 cut(s)	102, 320
PflMI	CCANNNNNTGG	1 cut(s)	512
PkrI	GCNGC	2 cut(s)	8, 198
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
Psp6I	CCWGG	2 cut(s)	114, 144
PspGI	CCWGG	2 cut(s)	114, 144
PspN4I	GGNNCC	1 cut(s)	595
PspPI	GGNCC	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	599
SaqAI	TTAA	2 cut(s)	192, 332
SatI	GCNGC	2 cut(s)	7, 197
Sau3AI	GATC	4 cut(s)	96, 494, 500, 566
Sau96I	GGNCC	1 cut(s)	112
SchI	GAGTC	1 cut(s)	405
ScrFI	CCNGG	2 cut(s)	116, 146
SfaNI	GCATC	3 cut(s)	18, 150, 463
SfcI	CTRYAG	2 cut(s)	64, 352
Sfr274I	CTCGAG	1 cut(s)	205
SlaI	CTCGAG	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	599
SmlI	CTYRAG	3 cut(s)	191, 205, 359
SmoI	CTYRAG	3 cut(s)	191, 205, 359
Sse9I	AATT	4 cut(s)	120, 127, 168, 346
SsiI	CCGC	2 cut(s)	199, 483
SspMI	CTAG	3 cut(s)	180, 264, 306
StyD4I	CCNGG	2 cut(s)	114, 144
TaiI	ACGT	2 cut(s)	339, 578
TaqI	TCGA	3 cut(s)	206, 497, 554
TasI	AATT	4 cut(s)	120, 127, 168, 346
TfiI	GAWTC	2 cut(s)	102, 320
Tru1I	TTAA	2 cut(s)	192, 332
Tru9I	TTAA	2 cut(s)	192, 332
TscAI	CASTG	1 cut(s)	79
TseI	GCWGC	2 cut(s)	6, 196
TspDTI	ATGAA	4 cut(s)	32, 263, 311, 376
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	79
Van91I	CCANNNNNTGG	1 cut(s)	512
Vha464I	CTTAAG	1 cut(s)	191
XbaI	TCTAGA	1 cut(s)	179
XhoI	CTCGAG	1 cut(s)	205
XspI	CTAG	3 cut(s)	180, 264, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.