Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001785

Physical Location & Seq

Genomic Coordinates Reverse (-)

45500396 .. 45501628

Gene Structure 1233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGATTGCAGGCCTTTGGAAATAACGGTGTTCGGCGCCAATGACATCAAGGACGTCAACATGTTCTCCAAGATGGACGTCTACGCCGTCGTCTCCGTCTCCGGTAACGGCGTCAGGAAGCAGAAGCTCCGCACCCCCGTCCACAAAGACGCCGGCACCAACCCCAAATGGAACCACACCCTCAAGCTCACCCTCGACAATTCCGCCCTCGACCGCCTCAAAATCAAAATCAAGCTCATCTCTGACCGCACCTTCGGCGAGACCAAGATCGGAAAGGCCGTGGTTCCGGTCAAGGACCTCCTGCAAAACGAGAAGAACGACAAGCACGTGACCTACCCGGTGGTGACTGCCAAGGGGAGACCCAAAGGCAGCGTCAGTTTCGGGTACAAGTTCGGCGAGAAATTCACGGCCCCTATTCCGGTCCAGCATGAGGCCCACAAGAAGGCCCACGAGCCCGTTTTGGCCTACCCGGCCGGTCATGCAGGGTCGAGCTCCGCTTACCCGCCACCCGGAGTGGCCCACCCGGTTTATCATCCTTACCCACCTCAGCCACAACCGGGTTACGGATACCCGCCGCAGCAGAAACCGGGTTACGGATACCCACCGCAGCAGCAGCCGGGTTACGGATACCCGCCGCAGCAGCAGCCGGGTTACGGGTACGCGCCGCCTCCGCAGGCCGGGTACGGGTACCCGCCGGTAGTGCAGCCGGGTTATGGGTACGTGCAGCAGCCGCAGAAGCCCAAAAGAGGAGGAGGGAACATGGCGCTTGGGTTGGGAGCGGGACTGTTGGGTGGGTTGCTGATCGGAGATATGGTTTCCGATGTGGGTGAGATGGCGGCGTATGATGCTGGTTTTGATGATGGTTTGGGTGATGGGTTTGATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

Protein Analysis

295

Amino Acids

31.78

Weight (kDa)

9.15

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	6 - 108	2e-15	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09070
fragaria_vesca	FvH4_6g06320 FvH4_6g06320 FvH4_6g06321
malus_domestica	MD04G1202300.v1.1 MD12G1216300.v1.1
prunus_persica	Prupe.6G322500_v2.0.a1 Prupe.6G322500_v2.0.a1 Prupe.6G322600_v2.0.a1
pyrus_communis	pycom04g17850 pycom12g20180
rosa_chinensis	RchiOBHm_Chr3g0455361 RchiOBHm_Chr3g0455371
rosa_laevigata	RLG00000025110 RLG00000025366
rosa_multiflora	Rmu_co8331519.1_g000001 Rmu_sc0002169.1_g000048 Rmu_sc0002169.1_g000049 Rmu_sc0002435.1_g000019 Rmu_sc0003222.1_g000014 Rmu_sc0004087.1_g000009 Rmu_sc0004343.1_g000002 Rmu_sc0004894.1_g000012 Rmu_sc0012909.1_g000009 Rmu_sc0024960.1_g000001 Rmu_sc0038181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379190 Rroxscaffold_6G00420510 Rroxscaffold_6G00424320 Rroxscaffold_6G00424330
rosa_rugosa	Rorug03G0006800 Rorug03G0006900 Rorug03G0033900 Rorug03G0287400
rosa_samantha	Rh3AG066400 Rh3AG066500 Rh3AG091800 Rh3BG068700 Rh3BG068800 Rh3CG067100 Rh3CG067200 Rh3CG095600 Rh3DG068600 Rh4BG236100
rosa_wichuraiana	Rw3G005240 Rw3G005250 Rw7G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	57, 81
Acc65I	GGTACC	1 cut(s)	687
AccB1I	GGYRCC	3 cut(s)	35, 155, 687
AccBSI	CCGCTC	1 cut(s)	779
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	1 cut(s)	662
AcoI	YGGCCR	1 cut(s)	471
AcsI	RAATTY	1 cut(s)	401
AcvI	CACGTG	1 cut(s)	328
AcyI	GRCGYC	5 cut(s)	36, 54, 78, 111, 150
AfaI	GTAC	5 cut(s)	386, 659, 683, 689, 719
AflIII	ACRYGT	1 cut(s)	60
AluBI	AGCT	4 cut(s)	127, 187, 235, 492
AluI	AGCT	4 cut(s)	127, 187, 235, 492
Alw21I	GWGCWC	1 cut(s)	494
Alw26I	GTCTC	4 cut(s)	97, 103, 254, 352
AoxI	GGCC	9 cut(s)	11, 276, 408, 432, 444, 462, 471, 516, 675
ApoI	RAATTY	1 cut(s)	401
ArsI	GACNNNNNNTTYG	4 cut(s)	236, 268, 357, 389
Asp718I	GGTACC	1 cut(s)	687
AspLEI	GCGC	3 cut(s)	38, 664, 766
AspS9I	GGNCC	6 cut(s)	295, 409, 421, 433, 445, 517
AsuHPI	GGTGA	4 cut(s)	181, 355, 839, 881
AvaII	GGWCC	2 cut(s)	295, 421
BanI	GGYRCC	3 cut(s)	35, 155, 687
BanII	GRGCYC	2 cut(s)	456, 494
BauI	CACGAG	1 cut(s)	449
BbrPI	CACGTG	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	494
BbvCI	CCTCAGC	1 cut(s)	546
BccI	CCATC	4 cut(s)	67, 826, 854, 866
BceAI	ACGGC	4 cut(s)	71, 124, 263, 423
BciVI	GTATCC	3 cut(s)	560, 590, 620
BcoDI	GTCTC	4 cut(s)	97, 103, 254, 352
BfaI	CTAG	1 cut(s)	886
BfoI	RGCGCY	2 cut(s)	39, 767
BfuI	GTATCC	3 cut(s)	560, 590, 620
BglI	GCCNNNNNGGC	1 cut(s)	470
Bme18I	GGWCC	2 cut(s)	295, 421
BmgT120I	GGNCC	6 cut(s)	295, 409, 421, 433, 445, 517
BmiI	GGNNCC	6 cut(s)	37, 157, 173, 285, 411, 689
BmsI	GCATC	1 cut(s)	835
Bpu10I	CCTNAGC	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	167
BsaAI	YACGTR	2 cut(s)	328, 721
BsaHI	GRCGYC	5 cut(s)	36, 54, 78, 111, 150
BsaI	GGTCTC	2 cut(s)	254, 352
BsaJI	CCNNGG	2 cut(s)	279, 351
BsaWI	WCCGGW	3 cut(s)	101, 286, 418
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 80, 798, 828
Bse118I	RCCGGY	3 cut(s)	152, 473, 694
BseDI	CCNNGG	2 cut(s)	279, 351
BseGI	GGATG	1 cut(s)	532
BseMII	CTCAG	1 cut(s)	560
BseRI	GAGGAG	2 cut(s)	762, 765
BseX3I	CGGCCG	1 cut(s)	471
BsgI	GTGCAG	2 cut(s)	722, 743
Bsh1236I	CGCG	1 cut(s)	662
Bsh1285I	CGRYCG	2 cut(s)	214, 474
BshFI	GGCC	9 cut(s)	13, 278, 410, 434, 446, 464, 473, 518, 677
BshNI	GGYRCC	3 cut(s)	35, 155, 687
BsiEI	CGRYCG	2 cut(s)	214, 474
BsiHKAI	GWGCWC	1 cut(s)	494
BslFI	GGGAC	1 cut(s)	795
BsmAI	GTCTC	4 cut(s)	97, 103, 254, 352
BsmBI	CGTCTC	2 cut(s)	97, 103
BsmFI	GGGAC	1 cut(s)	795
BsnI	GGCC	9 cut(s)	13, 278, 410, 434, 446, 464, 473, 518, 677
Bso31I	GGTCTC	2 cut(s)	254, 352
Bsp1286I	GDGCHC	2 cut(s)	456, 494
Bsp143I	GATC	2 cut(s)	267, 801
BspANI	GGCC	9 cut(s)	13, 278, 410, 434, 446, 464, 473, 518, 677
BspCNI	CTCAG	1 cut(s)	559
BspFNI	CGCG	1 cut(s)	662
BspLI	GGNNCC	6 cut(s)	37, 157, 173, 285, 411, 689
BspT107I	GGYRCC	3 cut(s)	35, 155, 687
BspTNI	GGTCTC	2 cut(s)	254, 352
BsrBI	CCGCTC	1 cut(s)	779
BsrFI	RCCGGY	3 cut(s)	152, 473, 694
BssAI	RCCGGY	3 cut(s)	152, 473, 694
BssECI	CCNNGG	2 cut(s)	279, 351
BssMI	GATC	2 cut(s)	267, 801
BssNI	GRCGYC	5 cut(s)	36, 54, 78, 111, 150
BssSI	CACGAG	1 cut(s)	449
BssT1I	CCWWGG	1 cut(s)	351
Bst2BI	CACGAG	1 cut(s)	449
Bst4CI	ACNGT	2 cut(s)	28, 786
BstACI	GRCGYC	5 cut(s)	36, 54, 78, 111, 150
BstBAI	YACGTR	2 cut(s)	328, 721
BstC8I	GCNNGC	3 cut(s)	11, 154, 675
BstDEI	CTNAG	1 cut(s)	546
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	532
BstFNI	CGCG	1 cut(s)	662
BstH2I	RGCGCY	2 cut(s)	39, 767
BstHHI	GCGC	3 cut(s)	38, 664, 766
BstKTI	GATC	2 cut(s)	270, 804
BstMAI	GTCTC	4 cut(s)	97, 103, 254, 352
BstMBI	GATC	2 cut(s)	267, 801
BstMCI	CGRYCG	2 cut(s)	214, 474
BstNSI	RCATGY	1 cut(s)	64
BstUI	CGCG	1 cut(s)	662
BstZI	CGGCCG	1 cut(s)	471
BsuI	GTATCC	3 cut(s)	560, 590, 620
BsuRI	GGCC	9 cut(s)	13, 278, 410, 434, 446, 464, 473, 518, 677
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	532
Cac8I	GCNNGC	3 cut(s)	11, 154, 675
CfoI	GCGC	3 cut(s)	38, 664, 766
Cfr10I	RCCGGY	3 cut(s)	152, 473, 694
Cfr13I	GGNCC	6 cut(s)	295, 409, 421, 433, 445, 517
CseI	GACGC	3 cut(s)	100, 158, 361
Csp6I	GTAC	5 cut(s)	385, 658, 682, 688, 718
CviAII	CATG	4 cut(s)	61, 428, 479, 760
CviQI	GTAC	5 cut(s)	385, 658, 682, 688, 718
DdeI	CTNAG	1 cut(s)	546
DinI	GGCGCC	1 cut(s)	37
DpnI	GATC	2 cut(s)	269, 803
DpnII	GATC	2 cut(s)	267, 801
EaeI	YGGCCR	1 cut(s)	471
EagI	CGGCCG	1 cut(s)	471
EciI	GGCGGA	1 cut(s)	193
Ecl136II	GAGCTC	1 cut(s)	492
EclXI	CGGCCG	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	351
Eco147I	AGGCCT	1 cut(s)	13
Eco24I	GRGCYC	2 cut(s)	456, 494
Eco31I	GGTCTC	2 cut(s)	254, 352
Eco47I	GGWCC	2 cut(s)	295, 421
Eco52I	CGGCCG	1 cut(s)	471
Eco53kI	GAGCTC	1 cut(s)	492
Eco72I	CACGTG	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	492
EcoO109I	RGGNCCY	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	351
EcoT38I	GRGCYC	2 cut(s)	456, 494
EgeI	GGCGCC	1 cut(s)	37
EheI	GGCGCC	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	351
Esp3I	CGTCTC	2 cut(s)	97, 103
FaeI	CATG	4 cut(s)	64, 431, 482, 763
FaiI	YATR	7 cut(s)	62, 429, 480, 714, 761, 812, 843
FaqI	GGGAC	1 cut(s)	795
FatI	CATG	4 cut(s)	60, 427, 478, 759
FauI	CCCGC	5 cut(s)	510, 579, 639, 699, 772
FblI	GTMKAC	1 cut(s)	81
FokI	GGATG	1 cut(s)	519
FriOI	GRGCYC	2 cut(s)	456, 494
FspBI	CTAG	1 cut(s)	886
GlaI	GCGC	3 cut(s)	37, 663, 765
HaeII	RGCGCY	2 cut(s)	39, 767
HaeIII	GGCC	9 cut(s)	13, 278, 410, 434, 446, 464, 473, 518, 677
HgaI	GACGC	3 cut(s)	100, 158, 361
HhaI	GCGC	3 cut(s)	38, 664, 766
Hin1I	GRCGYC	5 cut(s)	36, 54, 78, 111, 150
Hin1II	CATG	4 cut(s)	64, 431, 482, 763
Hin6I	GCGC	3 cut(s)	36, 662, 764
HinP1I	GCGC	3 cut(s)	36, 662, 764
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HphI	GGTGA	4 cut(s)	181, 355, 839, 881
Hpy166II	GTNNAC	3 cut(s)	58, 82, 142
Hpy188I	TCNGA	4 cut(s)	244, 272, 806, 820
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	3 cut(s)	58, 82, 142
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	262, 436
HpyCH4III	ACNGT	2 cut(s)	28, 786
HpyCH4IV	ACGT	4 cut(s)	54, 78, 327, 720
HpyCH4V	TGCA	5 cut(s)	9, 304, 482, 703, 724
HpyF3I	CTNAG	1 cut(s)	546
HpySE526I	ACGT	4 cut(s)	54, 78, 327, 720
Hsp92I	GRCGYC	5 cut(s)	36, 54, 78, 111, 150
Hsp92II	CATG	4 cut(s)	64, 431, 482, 763
HspAI	GCGC	3 cut(s)	36, 662, 764
KasI	GGCGCC	1 cut(s)	35
KpnI	GGTACC	1 cut(s)	691
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	267, 801
LmnI	GCTCC	3 cut(s)	132, 497, 776
LweI	GCATC	1 cut(s)	835
MaeI	CTAG	1 cut(s)	886
MaeII	ACGT	4 cut(s)	54, 78, 327, 720
MaeIII	GTNAC	7 cut(s)	104, 328, 343, 560, 590, 620, 650
MalI	GATC	2 cut(s)	269, 803
MbiI	CCGCTC	1 cut(s)	779
MboI	GATC	2 cut(s)	267, 801
MboII	GAAGA	1 cut(s)	325
MhlI	GDGCHC	2 cut(s)	456, 494
MluCI	AATT	2 cut(s)	199, 401
Mly113I	GGCGCC	1 cut(s)	36
MroNI	GCCGGC	1 cut(s)	152
MvnI	CGCG	1 cut(s)	662
NaeI	GCCGGC	1 cut(s)	154
NarI	GGCGCC	1 cut(s)	36
NdeII	GATC	2 cut(s)	267, 801
NgoMIV	GCCGGC	1 cut(s)	152
NlaIII	CATG	4 cut(s)	64, 431, 482, 763
NlaIV	GGNNCC	6 cut(s)	37, 157, 173, 285, 411, 689
NmuCI	GTSAC	2 cut(s)	328, 343
NspI	RCATGY	1 cut(s)	64
PceI	AGGCCT	1 cut(s)	13
PciI	ACATGT	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	4 cut(s)	84, 276, 315, 324
PdiI	GCCGGC	1 cut(s)	154
PluTI	GGCGCC	1 cut(s)	39
PmaCI	CACGTG	1 cut(s)	328
PmlI	CACGTG	1 cut(s)	328
Ppu21I	YACGTR	2 cut(s)	328, 721
PpuMI	RGGWCCY	1 cut(s)	295
PscI	ACATGT	1 cut(s)	60
Psp124BI	GAGCTC	1 cut(s)	494
Psp5II	RGGWCCY	1 cut(s)	295
PspCI	CACGTG	1 cut(s)	328
PspN4I	GGNNCC	6 cut(s)	37, 157, 173, 285, 411, 689
PspPI	GGNCC	6 cut(s)	295, 409, 421, 433, 445, 517
PspPPI	RGGWCCY	1 cut(s)	295
RsaI	GTAC	5 cut(s)	386, 659, 683, 689, 719
RsaNI	GTAC	5 cut(s)	385, 658, 682, 688, 718
SacI	GAGCTC	1 cut(s)	494
Sau3AI	GATC	2 cut(s)	267, 801
Sau96I	GGNCC	6 cut(s)	295, 409, 421, 433, 445, 517
SduI	GDGCHC	2 cut(s)	456, 494
SfaNI	GCATC	1 cut(s)	835
SfiI	GGCCNNNNNGGCC	1 cut(s)	470
SfoI	GGCGCC	1 cut(s)	37
SinI	GGWCC	2 cut(s)	295, 421
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	199, 401
SseBI	AGGCCT	1 cut(s)	13
SspDI	GGCGCC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	886
SstI	GAGCTC	1 cut(s)	494
StuI	AGGCCT	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	2 cut(s)	28, 786
TaiI	ACGT	4 cut(s)	57, 81, 330, 723
TaqI	TCGA	3 cut(s)	195, 210, 488
TasI	AATT	2 cut(s)	199, 401
TauI	GCSGC	5 cut(s)	577, 637, 667, 733, 839
TseFI	GTSAC	2 cut(s)	328, 343
Tsp45I	GTSAC	2 cut(s)	328, 343
TspGWI	ACGGA	4 cut(s)	85, 579, 609, 639
VpaK11BI	GGWCC	2 cut(s)	295, 421
XapI	RAATTY	1 cut(s)	401
XceI	RCATGY	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	1 cut(s)	886
ZraI	GACGTC	2 cut(s)	55, 79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.