Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001785

Physical Location & Seq

Genomic Coordinates Forward (+)

3644435 .. 3644890

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06321.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGACTGCAGGACCTTGGAAATAAGGCTGTTATCGGCCGACCACATCAAGAACGTCAATAAATTCTTCACAATGGACGTCTACGCCGTCGTTTCAATCTCCGGTGGTGCTGACATGCAGAGGTTCGTCACACCCGTCCACAAAGGTTGCGGCACCCACCCAAGATGGAACCACTCCCCCTTCACCTTCACGCTCGATGACGCCGCTCTTAACCAGAACCTCCTCAGGCTTGAGATCATGCTTGTCTCCGACCGAACCCTCAAGGAAACCGAGATCGGAAAGGTCGTCGTTCCGGTGAGTCAGTTGCTAGAGATTAGTAGCAGGGACAATAACGAGCTCCCGTACGTGACCTTTCAGGTTTTAAGGCCCAAAGAAGAACCACCCCAGGGCAAGTTCGGGGAGAAATTTTGGGCTCCTCTTCCCAAGGCCCAAGAGGAGGTACTCGAGGAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

Protein Analysis

152

Amino Acids

17.17

Weight (kDa)

5.57

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	5 - 105	1.5e-12	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09070
fragaria_vesca	FvH4_6g06320 FvH4_6g06320 FvH4_6g06321
malus_domestica	MD04G1202300.v1.1 MD12G1216300.v1.1
prunus_persica	Prupe.6G322500_v2.0.a1 Prupe.6G322500_v2.0.a1 Prupe.6G322600_v2.0.a1
pyrus_communis	pycom04g17850 pycom12g20180
rosa_chinensis	RchiOBHm_Chr3g0455361 RchiOBHm_Chr3g0455371
rosa_laevigata	RLG00000025110 RLG00000025366
rosa_multiflora	Rmu_co8331519.1_g000001 Rmu_sc0002169.1_g000048 Rmu_sc0002169.1_g000049 Rmu_sc0002435.1_g000019 Rmu_sc0003222.1_g000014 Rmu_sc0004087.1_g000009 Rmu_sc0004343.1_g000002 Rmu_sc0004894.1_g000012 Rmu_sc0012909.1_g000009 Rmu_sc0024960.1_g000001 Rmu_sc0038181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379190 Rroxscaffold_6G00420510 Rroxscaffold_6G00424320 Rroxscaffold_6G00424330
rosa_rugosa	Rorug03G0006800 Rorug03G0006900 Rorug03G0033900 Rorug03G0287400
rosa_samantha	Rh3AG066400 Rh3AG066500 Rh3AG091800 Rh3BG068700 Rh3BG068800 Rh3CG067100 Rh3CG067200 Rh3CG095600 Rh3DG068600 Rh4BG236100
rosa_wichuraiana	Rw3G005240 Rw3G005250 Rw7G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	81
AccB1I	GGYRCC	1 cut(s)	152
AccBSI	CCGCTC	1 cut(s)	206
AccI	GTMKAC	1 cut(s)	81
AciI	CCGC	2 cut(s)	150, 204
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	2 cut(s)	62, 404
AcyI	GRCGYC	2 cut(s)	78, 201
AfaI	GTAC	2 cut(s)	344, 441
AfiI	CCNNNNNNNGG	2 cut(s)	386, 436
AgsI	TTSAA	1 cut(s)	96
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	1 cut(s)	337
AluI	AGCT	1 cut(s)	337
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	1 cut(s)	250
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	4 cut(s)	36, 365, 426, 450
ApoI	RAATTY	2 cut(s)	62, 404
AspS9I	GGNCC	3 cut(s)	12, 366, 427
AsuHPI	GGTGA	2 cut(s)	175, 307
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	12
AxyI	CCTNAGG	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	2 cut(s)	339, 415
Bbv12I	GWGCWC	1 cut(s)	339
BccI	CCATC	1 cut(s)	159
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	386
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	2 cut(s)	308, 454
BfmI	CTRYAG	1 cut(s)	7
BisI	GCNGC	2 cut(s)	151, 204
BlsI	GCNGC	2 cut(s)	152, 205
Bme1390I	CCNGG	1 cut(s)	386
Bme18I	GGWCC	1 cut(s)	12
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	3 cut(s)	12, 366, 427
BmiI	GGNNCC	3 cut(s)	154, 170, 414
BmrFI	CCNGG	1 cut(s)	386
BpuEI	CTTGAG	2 cut(s)	245, 251
BsaAI	YACGTR	1 cut(s)	346
BsaHI	GRCGYC	2 cut(s)	78, 201
BsaJI	CCNNGG	4 cut(s)	15, 384, 385, 423
BsaWI	WCCGGW	2 cut(s)	101, 292
Bsc4I	CCNNNNNNNGG	2 cut(s)	386, 436
Bse21I	CCTNAGG	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	4 cut(s)	15, 384, 385, 423
BseLI	CCNNNNNNNGG	2 cut(s)	386, 436
BseMII	CTCAG	1 cut(s)	238
BseRI	GAGGAG	3 cut(s)	212, 405, 449
BseX3I	CGGCCG	1 cut(s)	36
Bsh1285I	CGRYCG	2 cut(s)	39, 253
BshFI	GGCC	4 cut(s)	38, 367, 428, 452
BshNI	GGYRCC	1 cut(s)	152
BsiEI	CGRYCG	2 cut(s)	39, 253
BsiHKAI	GWGCWC	1 cut(s)	339
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	2 cut(s)	102, 293
BsiWI	CGTACG	1 cut(s)	342
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	2 cut(s)	386, 436
BsmAI	GTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	338
BsnI	GGCC	4 cut(s)	38, 367, 428, 452
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	2 cut(s)	339, 415
Bsp143I	GATC	2 cut(s)	234, 273
BspACI	CCGC	2 cut(s)	150, 204
BspANI	GGCC	4 cut(s)	38, 367, 428, 452
BspCNI	CTCAG	1 cut(s)	237
BspLI	GGNNCC	3 cut(s)	154, 170, 414
BspMAI	CTGCAG	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	152
BsrBI	CCGCTC	1 cut(s)	206
BssECI	CCNNGG	4 cut(s)	15, 384, 385, 423
BssMI	GATC	2 cut(s)	234, 273
BssNI	GRCGYC	2 cut(s)	78, 201
BssT1I	CCWWGG	2 cut(s)	15, 423
Bst2UI	CCWGG	1 cut(s)	386
Bst6I	CTCTTC	1 cut(s)	423
BstACI	GRCGYC	2 cut(s)	78, 201
BstBAI	YACGTR	1 cut(s)	346
BstDEI	CTNAG	1 cut(s)	224
BstKTI	GATC	2 cut(s)	237, 276
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	2 cut(s)	234, 273
BstMCI	CGRYCG	2 cut(s)	39, 253
BstNI	CCWGG	1 cut(s)	386
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	384
BstSFI	CTRYAG	1 cut(s)	7
BstZI	CGGCCG	1 cut(s)	36
Bsu36I	CCTNAGG	1 cut(s)	224
BsuRI	GGCC	4 cut(s)	38, 367, 428, 452
Cfr13I	GGNCC	3 cut(s)	12, 366, 427
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	343, 440
CspCI	CAANNNNNGTGG	2 cut(s)	128, 163
CviAII	CATG	2 cut(s)	115, 238
CviJI	RGCY	8 cut(s)	28, 38, 229, 337, 367, 413, 428, 452
CviKI_1	RGCY	8 cut(s)	28, 38, 229, 337, 367, 413, 428, 452
CviQI	GTAC	2 cut(s)	343, 440
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	2 cut(s)	236, 275
DpnII	GATC	2 cut(s)	234, 273
EaeI	YGGCCR	1 cut(s)	36
EagI	CGGCCG	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Ecl136II	GAGCTC	1 cut(s)	337
EclXI	CGGCCG	1 cut(s)	36
Eco130I	CCWWGG	2 cut(s)	15, 423
Eco147I	AGGCCT	1 cut(s)	452
Eco24I	GRGCYC	2 cut(s)	339, 415
Eco47I	GGWCC	1 cut(s)	12
Eco52I	CGGCCG	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	337
Eco81I	CCTNAGG	1 cut(s)	224
Eco88I	CYCGRG	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	337
EcoO109I	RGGNCCY	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	384
EcoT14I	CCWWGG	2 cut(s)	15, 423
EcoT38I	GRGCYC	2 cut(s)	339, 415
ErhI	CCWWGG	2 cut(s)	15, 423
FaeI	CATG	2 cut(s)	118, 241
FaiI	YATR	2 cut(s)	116, 239
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	2 cut(s)	114, 237
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	151, 204
FriOI	GRGCYC	2 cut(s)	339, 415
Fsp4HI	GCNGC	2 cut(s)	151, 204
FspBI	CTAG	2 cut(s)	308, 454
GluI	GCNGC	2 cut(s)	151, 204
HaeIII	GGCC	4 cut(s)	38, 367, 428, 452
HapII	CCGG	2 cut(s)	102, 293
HgaI	GACGC	1 cut(s)	209
Hin1I	GRCGYC	2 cut(s)	78, 201
Hin1II	CATG	2 cut(s)	118, 241
HinfI	GANTC	1 cut(s)	298
HpaII	CCGG	2 cut(s)	102, 293
HphI	GGTGA	2 cut(s)	175, 307
Hpy166II	GTNNAC	2 cut(s)	82, 139
Hpy188I	TCNGA	2 cut(s)	250, 278
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	2 cut(s)	82, 139
Hpy99I	CGWCG	2 cut(s)	92, 290
HpyAV	CCTTC	2 cut(s)	190, 196
HpyCH4IV	ACGT	3 cut(s)	54, 78, 345
HpyCH4V	TGCA	2 cut(s)	9, 118
HpyF3I	CTNAG	1 cut(s)	224
HpySE526I	ACGT	3 cut(s)	54, 78, 345
Hsp92I	GRCGYC	2 cut(s)	78, 201
Hsp92II	CATG	2 cut(s)	118, 241
Kzo9I	GATC	2 cut(s)	234, 273
LmnI	GCTCC	2 cut(s)	342, 418
LpnPI	CCDG	8 cut(s)	115, 211, 227, 306, 307, 341, 371, 398
MaeI	CTAG	2 cut(s)	308, 454
MaeII	ACGT	3 cut(s)	54, 78, 345
MaeIII	GTNAC	2 cut(s)	127, 346
MalI	GATC	2 cut(s)	236, 275
MbiI	CCGCTC	1 cut(s)	206
MboI	GATC	2 cut(s)	234, 273
MboII	GAAGA	3 cut(s)	58, 386, 410
MhlI	GDGCHC	2 cut(s)	339, 415
MluCI	AATT	2 cut(s)	62, 404
MlyI	GAGTC	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	9 cut(s)	114, 230, 233, 269, 426, 427, 430, 439, 442
MseI	TTAA	2 cut(s)	210, 362
MspI	CCGG	2 cut(s)	102, 293
MspR9I	CCNGG	1 cut(s)	386
MvaI	CCWGG	1 cut(s)	386
NdeII	GATC	2 cut(s)	234, 273
NlaIII	CATG	2 cut(s)	118, 241
NlaIV	GGNNCC	3 cut(s)	154, 170, 414
NmuCI	GTSAC	2 cut(s)	127, 346
NspI	RCATGY	1 cut(s)	118
PaeR7I	CTCGAG	1 cut(s)	443
PasI	CCCWGGG	1 cut(s)	385
PceI	AGGCCT	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 132, 282
Pfl23II	CGTACG	1 cut(s)	342
PkrI	GCNGC	2 cut(s)	152, 205
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
Ppu21I	YACGTR	1 cut(s)	346
PpuMI	RGGWCCY	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PspLI	CGTACG	1 cut(s)	342
PspN4I	GGNNCC	3 cut(s)	154, 170, 414
PspPI	GGNCC	3 cut(s)	12, 366, 427
PspPPI	RGGWCCY	1 cut(s)	12
PspXI	VCTCGAGB	1 cut(s)	443
PstI	CTGCAG	1 cut(s)	11
RsaI	GTAC	2 cut(s)	344, 441
RsaNI	GTAC	2 cut(s)	343, 440
SacI	GAGCTC	1 cut(s)	339
SaqAI	TTAA	2 cut(s)	210, 362
SatI	GCNGC	2 cut(s)	151, 204
Sau3AI	GATC	2 cut(s)	234, 273
Sau96I	GGNCC	3 cut(s)	12, 366, 427
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	386
SduI	GDGCHC	2 cut(s)	339, 415
SfcI	CTRYAG	1 cut(s)	7
Sfr274I	CTCGAG	1 cut(s)	443
SinI	GGWCC	1 cut(s)	12
SlaI	CTCGAG	1 cut(s)	443
SmlI	CTYRAG	3 cut(s)	230, 260, 443
SmoI	CTYRAG	3 cut(s)	230, 260, 443
Sse9I	AATT	2 cut(s)	62, 404
SseBI	AGGCCT	1 cut(s)	452
SsiI	CCGC	2 cut(s)	150, 204
SspMI	CTAG	2 cut(s)	308, 454
SstI	GAGCTC	1 cut(s)	339
StuI	AGGCCT	1 cut(s)	452
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	2 cut(s)	15, 423
TaiI	ACGT	3 cut(s)	57, 81, 348
TaqI	TCGA	2 cut(s)	195, 444
TaqII	GACCGA	1 cut(s)	267
TasI	AATT	2 cut(s)	62, 404
TauI	GCSGC	2 cut(s)	153, 206
Tru1I	TTAA	2 cut(s)	210, 362
Tru9I	TTAA	2 cut(s)	210, 362
TseFI	GTSAC	2 cut(s)	127, 346
Tsp45I	GTSAC	2 cut(s)	127, 346
VpaK11BI	GGWCC	1 cut(s)	12
XapI	RAATTY	2 cut(s)	62, 404
XceI	RCATGY	1 cut(s)	118
XhoI	CTCGAG	1 cut(s)	443
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	2 cut(s)	308, 454
ZraI	GACGTC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.