Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012909.1

Orthogroup ID

OG0001785

Physical Location & Seq

Genomic Coordinates Reverse (-)

64062 .. 64442

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012909.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgaacatgttctccaagatggacgtctacgccatcgtctccgtctccggtaacggcgtcaggaagcagaagctctgtaaccccatccacaaagatgccgtcaccaaccccaaatgggaccacaccctcaagttcacccttgacaactccgccctcgacagcctccaaatccaaatcaagctcatctgtgaccgtaccttcggcgagaccaagatcggaaaggcagtcgttccggtcaaggacctcctgcaaaacgagaagaacgacaagcacgtgacatatccggtcatcgctgccaaggggagacccaaaggcaacgagatgagaacaacgacggtgaacgaagccgcaaatgatggagtagctggcgttgatggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

Protein Analysis

126

Amino Acids

13.82

Weight (kDa)

9.12

Isoelectric Point (pI)

18.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09070
fragaria_vesca	FvH4_6g06320 FvH4_6g06320 FvH4_6g06321
malus_domestica	MD04G1202300.v1.1 MD12G1216300.v1.1
prunus_persica	Prupe.6G322500_v2.0.a1 Prupe.6G322500_v2.0.a1 Prupe.6G322600_v2.0.a1
pyrus_communis	pycom04g17850 pycom12g20180
rosa_chinensis	RchiOBHm_Chr3g0455361 RchiOBHm_Chr3g0455371
rosa_laevigata	RLG00000025110 RLG00000025366
rosa_multiflora	Rmu_co8331519.1_g000001 Rmu_sc0002169.1_g000048 Rmu_sc0002169.1_g000049 Rmu_sc0002435.1_g000019 Rmu_sc0003222.1_g000014 Rmu_sc0004087.1_g000009 Rmu_sc0004343.1_g000002 Rmu_sc0004894.1_g000012 Rmu_sc0012909.1_g000009 Rmu_sc0024960.1_g000001 Rmu_sc0038181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379190 Rroxscaffold_6G00420510 Rroxscaffold_6G00424320 Rroxscaffold_6G00424330
rosa_rugosa	Rorug03G0006800 Rorug03G0006900 Rorug03G0033900 Rorug03G0287400
rosa_samantha	Rh3AG066400 Rh3AG066500 Rh3AG091800 Rh3BG068700 Rh3BG068800 Rh3CG067100 Rh3CG067200 Rh3CG095600 Rh3DG068600 Rh4BG236100
rosa_wichuraiana	Rw3G005240 Rw3G005250 Rw7G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	27
AccI	GTMKAC	1 cut(s)	27
AciI	CCGC	2 cut(s)	150, 348
AcvI	CACGTG	1 cut(s)	274
AcyI	GRCGYC	2 cut(s)	24, 57
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	115
AflIII	ACRYGT	1 cut(s)	6
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	3 cut(s)	73, 181, 365
AluI	AGCT	3 cut(s)	73, 181, 365
Alw26I	GTCTC	4 cut(s)	43, 49, 200, 298
ApeKI	GCWGC	1 cut(s)	293
ArsI	GACNNNNNNTTYG	4 cut(s)	84, 116, 182, 214
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	118, 241
AsuHPI	GGTGA	3 cut(s)	94, 127, 349
AvaII	GGWCC	2 cut(s)	118, 241
BbrPI	CACGTG	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	5 cut(s)	13, 41, 92, 350, 368
BceAI	ACGGC	2 cut(s)	70, 83
BcoDI	GTCTC	4 cut(s)	43, 49, 200, 298
BisI	GCNGC	2 cut(s)	294, 348
BlsI	GCNGC	2 cut(s)	295, 349
Bme18I	GGWCC	2 cut(s)	118, 241
BmgT120I	GGNCC	2 cut(s)	118, 241
BmiI	GGNNCC	1 cut(s)	119
BmsI	GCATC	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	274
BsaHI	GRCGYC	2 cut(s)	24, 57
BsaI	GGTCTC	2 cut(s)	200, 298
BsaJI	CCNNGG	1 cut(s)	297
BsaWI	WCCGGW	3 cut(s)	47, 232, 283
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	280
BsiSI	CCGG	3 cut(s)	48, 233, 284
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	4 cut(s)	43, 49, 200, 298
BsmBI	CGTCTC	2 cut(s)	43, 49
BsmFI	GGGAC	1 cut(s)	131
Bso31I	GGTCTC	2 cut(s)	200, 298
Bsp143I	GATC	1 cut(s)	213
BspACI	CCGC	2 cut(s)	150, 348
BspLI	GGNNCC	1 cut(s)	119
BspTNI	GGTCTC	2 cut(s)	200, 298
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	213
BssNI	GRCGYC	2 cut(s)	24, 57
BssT1I	CCWWGG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	194, 337
BstACI	GRCGYC	2 cut(s)	24, 57
BstBAI	YACGTR	1 cut(s)	274
BstC8I	GCNNGC	1 cut(s)	367
BstF5I	GGATG	1 cut(s)	84
BstKTI	GATC	1 cut(s)	216
BstMAI	GTCTC	4 cut(s)	43, 49, 200, 298
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	1 cut(s)	375
BstNSI	RCATGY	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	280
BtgZI	GCGATG	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	367
Cfr13I	GGNCC	2 cut(s)	118, 241
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	6 cut(s)	73, 162, 181, 347, 365, 378
CviKI_1	RGCY	6 cut(s)	73, 162, 181, 347, 365, 378
CviQI	GTAC	1 cut(s)	195
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
EciI	GGCGGA	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	297
Eco31I	GGTCTC	2 cut(s)	200, 298
Eco47I	GGWCC	2 cut(s)	118, 241
Eco72I	CACGTG	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
Esp3I	CGTCTC	2 cut(s)	43, 49
FaeI	CATG	1 cut(s)	10
FaiI	YATR	2 cut(s)	8, 280
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	1 cut(s)	6
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	294, 348
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	2 cut(s)	294, 348
GluI	GCNGC	2 cut(s)	294, 348
HapII	CCGG	3 cut(s)	48, 233, 284
HgaI	GACGC	1 cut(s)	46
Hin1I	GRCGYC	2 cut(s)	24, 57
Hin1II	CATG	1 cut(s)	10
HpaII	CCGG	3 cut(s)	48, 233, 284
HphI	GGTGA	3 cut(s)	94, 127, 349
Hpy166II	GTNNAC	3 cut(s)	28, 135, 340
Hpy188I	TCNGA	1 cut(s)	218
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	3 cut(s)	28, 135, 340
Hpy99I	CGWCG	1 cut(s)	337
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	2 cut(s)	194, 337
HpyCH4IV	ACGT	2 cut(s)	24, 273
HpyCH4V	TGCA	1 cut(s)	250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	375
HpySE526I	ACGT	2 cut(s)	24, 273
Hsp92I	GRCGYC	2 cut(s)	24, 57
Hsp92II	CATG	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	213
LpnPI	CCDG	6 cut(s)	46, 61, 246, 260, 297, 351
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	1 cut(s)	85
MaeII	ACGT	2 cut(s)	24, 273
MaeIII	GTNAC	5 cut(s)	50, 77, 100, 188, 274
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	1 cut(s)	271
MnlI	CCTC	4 cut(s)	137, 164, 173, 254
MroXI	GAANNNNTTC	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	93
MspI	CCGG	3 cut(s)	48, 233, 284
MwoI	GCNNNNNNNGC	1 cut(s)	375
NdeII	GATC	1 cut(s)	213
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	1 cut(s)	119
NmuCI	GTSAC	3 cut(s)	100, 188, 274
NspI	RCATGY	1 cut(s)	10
PciI	ACATGT	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	2 cut(s)	261, 270
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	295, 349
PmaCI	CACGTG	1 cut(s)	274
PmlI	CACGTG	1 cut(s)	274
Ppu21I	YACGTR	1 cut(s)	274
PpuMI	RGGWCCY	1 cut(s)	241
PscI	ACATGT	1 cut(s)	6
Psp5II	RGGWCCY	1 cut(s)	241
PspCI	CACGTG	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	2 cut(s)	118, 241
PspPPI	RGGWCCY	1 cut(s)	241
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	93
SatI	GCNGC	2 cut(s)	294, 348
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	2 cut(s)	118, 241
SetI	ASST	7 cut(s)	27, 75, 183, 200, 246, 276, 367
SfaNI	GCATC	1 cut(s)	85
SinI	GGWCC	2 cut(s)	118, 241
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SsiI	CCGC	2 cut(s)	150, 348
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	194, 337
TaiI	ACGT	2 cut(s)	27, 276
TaqI	TCGA	1 cut(s)	156
TauI	GCSGC	1 cut(s)	350
TseFI	GTSAC	3 cut(s)	100, 188, 274
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	3 cut(s)	100, 188, 274
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	31
VpaK11BI	GGWCC	2 cut(s)	118, 241
XceI	RCATGY	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	8
ZraI	GACGTC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.