Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001785

Physical Location & Seq

Genomic Coordinates Forward (+)

4643188 .. 4643805

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG067200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGACTGCAAGACCTTGGAACTAAGGCTGTTATCGGCTGACCAGATCAAGAACGTCAACAACTTCTCCACGATGGACGTCTACGCCGTCGTTTCAGTCTCCGGCGGAGCCGACAAGCACAAGTTCATCACACCCATCCACAAAAACTGCGGCACCCACCCCAGATGGAACCACTCCCCCTTCACTTTCACTCTCGACGACGCCGCTCTTAACCAGAACCGCCTCACGCTTAAGATCAAGCTCATCTCCGACCGAATCCTCAAGGAAACCAAGATCGGAAAGGCCGTCATTCCGGTGAGTCAGCTGCTAGAAAATAGTGGCAAGGACAAAATCCCGTACGTGACCTACACGGTTTTAAGGCCCAAGGAGAAACCCCAGGGCTACGTCACTTTTCTTTACAAGTTCGGCGAGAAATTTTGGGCTCCTCTTCCCGTTCAGCCCAAGGCCCAAAAGGAGGTTCTCGAGCAGCCAAGGAGTCTGATGTCCATGCCACAGCCGCAGGCCGAGTATGAGTACTCGTCACTTTTTCATTTGAGTTATGGGTATCCGTTACAGCCGCAAGCCGAGTACGAGTACTCGTCGATTGTGCAACAAAGTTACGGGTACCCGATACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

Protein Analysis

205

Amino Acids

23.48

Weight (kDa)

9.03

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	5 - 109	4.9e-14	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09070
fragaria_vesca	FvH4_6g06320 FvH4_6g06320 FvH4_6g06321
malus_domestica	MD04G1202300.v1.1 MD12G1216300.v1.1
prunus_persica	Prupe.6G322500_v2.0.a1 Prupe.6G322500_v2.0.a1 Prupe.6G322600_v2.0.a1
pyrus_communis	pycom04g17850 pycom12g20180
rosa_chinensis	RchiOBHm_Chr3g0455361 RchiOBHm_Chr3g0455371
rosa_laevigata	RLG00000025110 RLG00000025366
rosa_multiflora	Rmu_co8331519.1_g000001 Rmu_sc0002169.1_g000048 Rmu_sc0002169.1_g000049 Rmu_sc0002435.1_g000019 Rmu_sc0003222.1_g000014 Rmu_sc0004087.1_g000009 Rmu_sc0004343.1_g000002 Rmu_sc0004894.1_g000012 Rmu_sc0012909.1_g000009 Rmu_sc0024960.1_g000001 Rmu_sc0038181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379190 Rroxscaffold_6G00420510 Rroxscaffold_6G00424320 Rroxscaffold_6G00424330
rosa_rugosa	Rorug03G0006800 Rorug03G0006900 Rorug03G0033900 Rorug03G0287400
rosa_samantha	Rh3AG066400 Rh3AG066500 Rh3AG091800 Rh3BG068700 Rh3BG068800 Rh3CG067100 Rh3CG067200 Rh3CG095600 Rh3DG068600 Rh4BG236100
rosa_wichuraiana	Rw3G005240 Rw3G005250 Rw7G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	81
Acc65I	GGTACC	1 cut(s)	603
AccB1I	GGYRCC	2 cut(s)	152, 603
AccBSI	CCGCTC	1 cut(s)	206
AccI	GTMKAC	1 cut(s)	81
AciI	CCGC	6 cut(s)	105, 150, 204, 220, 497, 557
AcsI	RAATTY	1 cut(s)	413
AcyI	GRCGYC	2 cut(s)	78, 201
AfaI	GTAC	5 cut(s)	338, 515, 569, 575, 605
AfiI	CCNNNNNNNGG	1 cut(s)	454
AflII	CTTAAG	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	375
AjuI	GAANNNNNNNTTGG	2 cut(s)	441, 473
AluBI	AGCT	2 cut(s)	241, 304
AluI	AGCT	2 cut(s)	241, 304
Alw26I	GTCTC	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	461
AoxI	GGCC	4 cut(s)	282, 359, 444, 501
ApeKI	GCWGC	2 cut(s)	304, 466
ApoI	RAATTY	1 cut(s)	413
Asp718I	GGTACC	1 cut(s)	603
AspS9I	GGNCC	2 cut(s)	360, 445
AsuHPI	GGTGA	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	461
BanI	GGYRCC	2 cut(s)	152, 603
BanII	GRGCYC	1 cut(s)	424
BbvI	GCAGC	2 cut(s)	291, 478
BccI	CCATC	3 cut(s)	67, 143, 159
BceAI	ACGGC	2 cut(s)	71, 269
BciT130I	CCWGG	1 cut(s)	377
BciVI	GTATCC	1 cut(s)	555
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	1 cut(s)	308
BfrI	CTTAAG	1 cut(s)	230
BfuI	GTATCC	1 cut(s)	555
BisI	GCNGC	6 cut(s)	151, 204, 305, 467, 497, 557
BlsI	GCNGC	6 cut(s)	152, 205, 306, 468, 498, 558
BmcAI	AGTACT	2 cut(s)	515, 575
Bme1390I	CCNGG	1 cut(s)	377
BmeT110I	CYCGRG	1 cut(s)	461
BmgT120I	GGNCC	2 cut(s)	360, 445
BmiI	GGNNCC	5 cut(s)	109, 154, 170, 423, 605
BmrFI	CCNGG	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	245
BsaAI	YACGTR	1 cut(s)	340
BsaHI	GRCGYC	2 cut(s)	78, 201
BsaJI	CCNNGG	6 cut(s)	15, 363, 375, 376, 441, 470
BsaWI	WCCGGW	1 cut(s)	292
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	6 cut(s)	15, 363, 375, 376, 441, 470
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseRI	GAGGAG	1 cut(s)	414
BseXI	GCAGC	2 cut(s)	291, 478
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	4 cut(s)	284, 361, 446, 503
BshNI	GGYRCC	2 cut(s)	152, 603
BsiEI	CGRYCG	1 cut(s)	253
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	2 cut(s)	102, 293
BsiWI	CGTACG	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmAI	GTCTC	1 cut(s)	103
BsnI	GGCC	4 cut(s)	284, 361, 446, 503
BsoBI	CYCGRG	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	3 cut(s)	45, 234, 273
BspACI	CCGC	6 cut(s)	105, 150, 204, 220, 497, 557
BspANI	GGCC	4 cut(s)	284, 361, 446, 503
BspLI	GGNNCC	5 cut(s)	109, 154, 170, 423, 605
BspT107I	GGYRCC	2 cut(s)	152, 603
BspTI	CTTAAG	1 cut(s)	230
BsrBI	CCGCTC	1 cut(s)	206
BssECI	CCNNGG	6 cut(s)	15, 363, 375, 376, 441, 470
BssMI	GATC	3 cut(s)	45, 234, 273
BssNI	GRCGYC	2 cut(s)	78, 201
BssT1I	CCWWGG	4 cut(s)	15, 363, 441, 470
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	1 cut(s)	432
BstACI	GRCGYC	2 cut(s)	78, 201
BstAFI	CTTAAG	1 cut(s)	230
BstBAI	YACGTR	1 cut(s)	340
BstC8I	GCNNGC	2 cut(s)	501, 561
BstDEI	CTNAG	1 cut(s)	23
BstF5I	GGATG	1 cut(s)	135
BstKTI	GATC	3 cut(s)	48, 237, 276
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	3 cut(s)	45, 234, 273
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	496
BstNI	CCWGG	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	375
BstV1I	GCAGC	2 cut(s)	291, 478
BsuI	GTATCC	1 cut(s)	555
BsuRI	GGCC	4 cut(s)	284, 361, 446, 503
BtsCI	GGATG	1 cut(s)	135
Cac8I	GCNNGC	2 cut(s)	501, 561
Cfr13I	GGNCC	2 cut(s)	360, 445
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	5 cut(s)	337, 514, 568, 574, 604
CviAII	CATG	1 cut(s)	487
CviQI	GTAC	5 cut(s)	337, 514, 568, 574, 604
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	3 cut(s)	47, 236, 275
DpnII	GATC	3 cut(s)	45, 234, 273
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
EciI	GGCGGA	1 cut(s)	120
Eco130I	CCWWGG	4 cut(s)	15, 363, 441, 470
Eco24I	GRGCYC	1 cut(s)	424
Eco88I	CYCGRG	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	375
EcoT14I	CCWWGG	4 cut(s)	15, 363, 441, 470
EcoT38I	GRGCYC	1 cut(s)	424
ErhI	CCWWGG	4 cut(s)	15, 363, 441, 470
FaeI	CATG	1 cut(s)	490
FaiI	YATR	3 cut(s)	488, 510, 540
FatI	CATG	1 cut(s)	486
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	6 cut(s)	151, 204, 305, 467, 497, 557
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	6 cut(s)	151, 204, 305, 467, 497, 557
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	6 cut(s)	151, 204, 305, 467, 497, 557
HaeIII	GGCC	4 cut(s)	284, 361, 446, 503
HapII	CCGG	2 cut(s)	102, 293
HgaI	GACGC	1 cut(s)	209
Hin1I	GRCGYC	2 cut(s)	78, 201
Hin1II	CATG	1 cut(s)	490
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	3 cut(s)	255, 298, 475
HpaII	CCGG	2 cut(s)	102, 293
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	2 cut(s)	58, 82
Hpy188I	TCNGA	3 cut(s)	250, 278, 480
Hpy188III	TCNNGA	3 cut(s)	49, 194, 461
Hpy8I	GTNNAC	2 cut(s)	58, 82
Hpy99I	CGWCG	4 cut(s)	92, 200, 203, 583
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4IV	ACGT	4 cut(s)	54, 78, 339, 384
HpyCH4V	TGCA	2 cut(s)	9, 589
HpyF10VI	GCNNNNNNNGC	1 cut(s)	496
HpyF3I	CTNAG	1 cut(s)	23
HpySE526I	ACGT	4 cut(s)	54, 78, 339, 384
Hsp92I	GRCGYC	2 cut(s)	78, 201
Hsp92II	CATG	1 cut(s)	490
KpnI	GGTACC	1 cut(s)	607
Kzo9I	GATC	3 cut(s)	45, 234, 273
LmnI	GCTCC	2 cut(s)	107, 427
LpnPI	CCDG	8 cut(s)	56, 115, 175, 227, 306, 362, 389, 485
Lsp1109I	GCAGC	2 cut(s)	291, 478
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	4 cut(s)	54, 78, 339, 384
MaeIII	GTNAC	5 cut(s)	340, 385, 519, 549, 596
MalI	GATC	3 cut(s)	47, 236, 275
MbiI	CCGCTC	1 cut(s)	206
MboI	GATC	3 cut(s)	45, 234, 273
MboII	GAAGA	1 cut(s)	419
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	1 cut(s)	413
MlyI	GAGTC	2 cut(s)	307, 484
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	4 cut(s)	233, 269, 435, 448
MseI	TTAA	3 cut(s)	210, 231, 356
MslI	CAYNNNNRTG	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	304
MspCI	CTTAAG	1 cut(s)	230
MspI	CCGG	2 cut(s)	102, 293
MspR9I	CCNGG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	496
NdeII	GATC	3 cut(s)	45, 234, 273
NlaIII	CATG	1 cut(s)	490
NlaIV	GGNNCC	5 cut(s)	109, 154, 170, 423, 605
NmeAIII	GCCGAG	2 cut(s)	529, 589
NmuCI	GTSAC	3 cut(s)	340, 385, 519
PaeR7I	CTCGAG	1 cut(s)	461
PasI	CCCWGGG	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 282
PfeI	GAWTC	1 cut(s)	255
Pfl23II	CGTACG	1 cut(s)	336
PkrI	GCNGC	6 cut(s)	152, 205, 306, 468, 498, 558
PleI	GAGTC	2 cut(s)	306, 483
PpsI	GAGTC	2 cut(s)	306, 483
Ppu21I	YACGTR	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspLI	CGTACG	1 cut(s)	336
PspN4I	GGNNCC	5 cut(s)	109, 154, 170, 423, 605
PspPI	GGNCC	2 cut(s)	360, 445
PvuII	CAGCTG	1 cut(s)	304
RsaI	GTAC	5 cut(s)	338, 515, 569, 575, 605
RsaNI	GTAC	5 cut(s)	337, 514, 568, 574, 604
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	3 cut(s)	210, 231, 356
SatI	GCNGC	6 cut(s)	151, 204, 305, 467, 497, 557
Sau3AI	GATC	3 cut(s)	45, 234, 273
Sau96I	GGNCC	2 cut(s)	360, 445
ScaI	AGTACT	2 cut(s)	515, 575
SchI	GAGTC	2 cut(s)	307, 484
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	424
SetI	ASST	9 cut(s)	17, 57, 81, 243, 306, 342, 347, 387, 459
Sfr274I	CTCGAG	1 cut(s)	461
SlaI	CTCGAG	1 cut(s)	461
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	3 cut(s)	230, 260, 461
SmoI	CTYRAG	3 cut(s)	230, 260, 461
Sse9I	AATT	1 cut(s)	413
SsiI	CCGC	6 cut(s)	105, 150, 204, 220, 497, 557
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	375
StyI	CCWWGG	4 cut(s)	15, 363, 441, 470
TaaI	ACNGT	1 cut(s)	352
TaiI	ACGT	4 cut(s)	57, 81, 342, 387
TaqI	TCGA	3 cut(s)	195, 462, 581
TaqII	GACCGA	1 cut(s)	267
TasI	AATT	1 cut(s)	413
TatI	WGTACW	2 cut(s)	513, 573
TauI	GCSGC	4 cut(s)	153, 206, 499, 559
TfiI	GAWTC	1 cut(s)	255
Tru1I	TTAA	3 cut(s)	210, 231, 356
Tru9I	TTAA	3 cut(s)	210, 231, 356
TseFI	GTSAC	3 cut(s)	340, 385, 519
TseI	GCWGC	2 cut(s)	304, 466
Tsp45I	GTSAC	3 cut(s)	340, 385, 519
TspDTI	ATGAA	2 cut(s)	115, 518
TspGWI	ACGGA	1 cut(s)	537
Vha464I	CTTAAG	1 cut(s)	230
XapI	RAATTY	1 cut(s)	413
XhoI	CTCGAG	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	1 cut(s)	308
ZraI	GACGTC	1 cut(s)	79
ZrmI	AGTACT	2 cut(s)	515, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.