Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001785

Physical Location & Seq

Genomic Coordinates Forward (+)

3642082 .. 3643555

Gene Structure 1474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGATTGCAGACCTTTTGAAATAACCCTGATCGGCGCCCATGACATCAAGGACGTCAACACCTTCTCCAAGATGGACGTCTACGCCGCCGTCACCGTCTCCGGCGCCGGCGTAAGGAAGCAGAAGCTCCGCACCCCTGTCCACAAAGACGGCGGCACCAGCCCCAAATGGAACCACACCCTCAAGTTCACCCTCGACGACGCCGCCCTCGTCTCCGACCGCGTCAAGATCAAGATCAAGCTCGTCTCCGACCGCACCTTTGGCCCCACCAAGATCGGAAAAGCCGTCGTTCCGGCCAAGGAGCTCTTGCAGAGCGAGAAGGCCAACGGCGAGAAACCCGTGAGCTACCTCGTCGTGACTCCGAAAGGGAAGACCAAAGGAAGCGTGAGCTTCGGCTACAAGTTCGGCGAGAAATTCTCGGCGCCTTTACCGGTTCAGCACGAGGCCCACAAGAAAGCCCATGAGCCCGTTATGGCGTACCCGGCGGGCCATGCCGGGTCGAGCTCGGCTTACCCGCCACCTGGTGTGGCCCACCCGGTTTATCAGCCTTACCCGCCGCAGCCGCAACCGGGTTATGGCTACCCGCCGCAGCAGCAGCCGGGTTACGGGTACGCGCCGCCGCCGCAGGCCGGGTACGGGTACCCGCCGGTGGTGCAGCCCGGTTATGGGTACGCGCAGAAGCCGCAGAAGCCTAAGAGAGGAGGAGGGAACATGGGGCTTGGGTTGGGAGCTGGATTGTTGGGTGGTTTGTTGATCGGAGATATGGTTTCCGACGTGGGTGACATGGGGGCGTATGATGGTGGGTATGGTGATGGGTTCGATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

Protein Analysis

276

Amino Acids

29.2

Weight (kDa)

9.32

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	7 - 112	1.1e-13	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09070
fragaria_vesca	FvH4_6g06320 FvH4_6g06320 FvH4_6g06321
malus_domestica	MD04G1202300.v1.1 MD12G1216300.v1.1
prunus_persica	Prupe.6G322500_v2.0.a1 Prupe.6G322500_v2.0.a1 Prupe.6G322600_v2.0.a1
pyrus_communis	pycom04g17850 pycom12g20180
rosa_chinensis	RchiOBHm_Chr3g0455361 RchiOBHm_Chr3g0455371
rosa_laevigata	RLG00000025110 RLG00000025366
rosa_multiflora	Rmu_co8331519.1_g000001 Rmu_sc0002169.1_g000048 Rmu_sc0002169.1_g000049 Rmu_sc0002435.1_g000019 Rmu_sc0003222.1_g000014 Rmu_sc0004087.1_g000009 Rmu_sc0004343.1_g000002 Rmu_sc0004894.1_g000012 Rmu_sc0012909.1_g000009 Rmu_sc0024960.1_g000001 Rmu_sc0038181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379190 Rroxscaffold_6G00420510 Rroxscaffold_6G00424320 Rroxscaffold_6G00424330
rosa_rugosa	Rorug03G0006800 Rorug03G0006900 Rorug03G0033900 Rorug03G0287400
rosa_samantha	Rh3AG066400 Rh3AG066500 Rh3AG091800 Rh3BG068700 Rh3BG068800 Rh3CG067100 Rh3CG067200 Rh3CG095600 Rh3DG068600 Rh4BG236100
rosa_wichuraiana	Rw3G005240 Rw3G005250 Rw7G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	57, 81
Acc65I	GGTACC	1 cut(s)	639
AccB1I	GGYRCC	5 cut(s)	35, 104, 155, 421, 639
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	3 cut(s)	222, 614, 674
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	1 cut(s)	413
AcyI	GRCGYC	6 cut(s)	36, 54, 78, 105, 201, 422
AdeI	CACNNNGTG	1 cut(s)	524
AfaI	GTAC	5 cut(s)	479, 611, 635, 641, 671
AgeI	ACCGGT	1 cut(s)	430
AgsI	TTSAA	1 cut(s)	20
AjiI	CACGTC	1 cut(s)	775
AjnI	CCWGG	1 cut(s)	520
AluBI	AGCT	7 cut(s)	127, 241, 304, 345, 390, 504, 731
AluI	AGCT	7 cut(s)	127, 241, 304, 345, 390, 504, 731
Alw21I	GWGCWC	2 cut(s)	306, 506
Alw26I	GTCTC	3 cut(s)	103, 217, 250
AoxI	GGCC	7 cut(s)	262, 294, 321, 444, 487, 528, 627
ApeKI	GCWGC	5 cut(s)	559, 589, 592, 595, 655
ApoI	RAATTY	1 cut(s)	413
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AsiGI	ACCGGT	1 cut(s)	430
Asp718I	GGTACC	1 cut(s)	639
AspLEI	GCGC	5 cut(s)	38, 107, 424, 616, 676
AspS9I	GGNCC	4 cut(s)	263, 445, 487, 529
AsuC2I	CCSGG	7 cut(s)	482, 496, 536, 570, 600, 631, 660
AsuHPI	GGTGA	4 cut(s)	85, 181, 791, 821
BanI	GGYRCC	5 cut(s)	35, 104, 155, 421, 639
BanII	GRGCYC	3 cut(s)	306, 468, 506
BauI	CACGAG	1 cut(s)	440
BbsI	GAAGAC	1 cut(s)	377
Bbv12I	GWGCWC	2 cut(s)	306, 506
BbvI	GCAGC	5 cut(s)	571, 601, 604, 607, 667
BccI	CCATC	3 cut(s)	67, 791, 806
BceAI	ACGGC	4 cut(s)	74, 166, 269, 343
BciT130I	CCWGG	1 cut(s)	522
BcnI	CCSGG	7 cut(s)	482, 496, 536, 570, 600, 631, 660
BcoDI	GTCTC	3 cut(s)	103, 217, 250
BfaI	CTAG	1 cut(s)	826
BfoI	RGCGCY	3 cut(s)	39, 108, 425
Bme1390I	CCNGG	8 cut(s)	482, 496, 522, 536, 570, 600, 631, 660
BmgBI	CACGTC	1 cut(s)	775
BmgT120I	GGNCC	4 cut(s)	263, 445, 487, 529
BmiI	GGNNCC	7 cut(s)	37, 106, 157, 173, 265, 423, 641
BmrFI	CCNGG	8 cut(s)	482, 496, 522, 536, 570, 600, 631, 660
BpiI	GAAGAC	1 cut(s)	377
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
BpuEI	CTTGAG	1 cut(s)	167
BpuMI	CCSGG	7 cut(s)	482, 496, 536, 570, 600, 631, 660
BsaBI	GATNNNNATC	1 cut(s)	233
BsaHI	GRCGYC	6 cut(s)	36, 54, 78, 105, 201, 422
BsaJI	CCNNGG	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	430
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 80, 750, 780
Bse118I	RCCGGY	3 cut(s)	107, 430, 646
Bse8I	GATNNNNATC	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	522
BseDI	CCNNGG	1 cut(s)	297
BseJI	GATNNNNATC	1 cut(s)	233
BseRI	GAGGAG	2 cut(s)	714, 717
BseXI	GCAGC	5 cut(s)	571, 601, 604, 607, 667
BsgI	GTGCAG	1 cut(s)	674
Bsh1236I	CGCG	3 cut(s)	222, 614, 674
Bsh1285I	CGRYCG	2 cut(s)	220, 253
BshFI	GGCC	7 cut(s)	264, 296, 323, 446, 489, 530, 629
BshNI	GGYRCC	5 cut(s)	35, 104, 155, 421, 639
BshTI	ACCGGT	1 cut(s)	430
BsiEI	CGRYCG	2 cut(s)	220, 253
BsiHKAI	GWGCWC	2 cut(s)	306, 506
BsmAI	GTCTC	3 cut(s)	103, 217, 250
BsmBI	CGTCTC	3 cut(s)	103, 217, 250
BsnI	GGCC	7 cut(s)	264, 296, 323, 446, 489, 530, 629
Bsp1286I	GDGCHC	3 cut(s)	306, 468, 506
Bsp143I	GATC	5 cut(s)	30, 228, 234, 273, 753
BspANI	GGCC	7 cut(s)	264, 296, 323, 446, 489, 530, 629
BspFNI	CGCG	3 cut(s)	222, 614, 674
BspLI	GGNNCC	7 cut(s)	37, 106, 157, 173, 265, 423, 641
BspT107I	GGYRCC	5 cut(s)	35, 104, 155, 421, 639
BsrFI	RCCGGY	3 cut(s)	107, 430, 646
BssAI	RCCGGY	3 cut(s)	107, 430, 646
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	5 cut(s)	30, 228, 234, 273, 753
BssNI	GRCGYC	6 cut(s)	36, 54, 78, 105, 201, 422
BssSI	CACGAG	1 cut(s)	440
BssT1I	CCWWGG	1 cut(s)	297
Bst2BI	CACGAG	1 cut(s)	440
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	1 cut(s)	97
BstACI	GRCGYC	6 cut(s)	36, 54, 78, 105, 201, 422
BstC8I	GCNNGC	3 cut(s)	109, 487, 627
BstDEI	CTNAG	1 cut(s)	693
BstENI	CCTNNNNNAGG	1 cut(s)	696
BstFNI	CGCG	3 cut(s)	222, 614, 674
BstH2I	RGCGCY	3 cut(s)	39, 108, 425
BstHHI	GCGC	5 cut(s)	38, 107, 424, 616, 676
BstKTI	GATC	5 cut(s)	33, 231, 237, 276, 756
BstMAI	GTCTC	3 cut(s)	103, 217, 250
BstMBI	GATC	5 cut(s)	30, 228, 234, 273, 753
BstMCI	CGRYCG	2 cut(s)	220, 253
BstNI	CCWGG	1 cut(s)	522
BstSCI	CCNGG	8 cut(s)	480, 494, 520, 534, 568, 598, 629, 658
BstUI	CGCG	3 cut(s)	222, 614, 674
BstV1I	GCAGC	5 cut(s)	571, 601, 604, 607, 667
BstV2I	GAAGAC	1 cut(s)	377
BsuRI	GGCC	7 cut(s)	264, 296, 323, 446, 489, 530, 629
BtrI	CACGTC	1 cut(s)	775
Cac8I	GCNNGC	3 cut(s)	109, 487, 627
CfoI	GCGC	5 cut(s)	38, 107, 424, 616, 676
Cfr10I	RCCGGY	3 cut(s)	107, 430, 646
Cfr13I	GGNCC	4 cut(s)	263, 445, 487, 529
CseI	GACGC	2 cut(s)	209, 211
CsiI	ACCWGGT	1 cut(s)	520
Csp6I	GTAC	5 cut(s)	478, 610, 634, 640, 670
CspAI	ACCGGT	1 cut(s)	430
CviAII	CATG	5 cut(s)	41, 461, 491, 712, 784
CviQI	GTAC	5 cut(s)	478, 610, 634, 640, 670
DdeI	CTNAG	1 cut(s)	693
DinI	GGCGCC	3 cut(s)	37, 106, 423
DpnI	GATC	5 cut(s)	32, 230, 236, 275, 755
DpnII	GATC	5 cut(s)	30, 228, 234, 273, 753
DraIII	CACNNNGTG	1 cut(s)	524
EaeI	YGGCCR	1 cut(s)	294
Ecl136II	GAGCTC	2 cut(s)	304, 504
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	3 cut(s)	306, 468, 506
Eco53kI	GAGCTC	2 cut(s)	304, 504
EcoICRI	GAGCTC	2 cut(s)	304, 504
EcoNI	CCTNNNNNAGG	1 cut(s)	696
EcoRII	CCWGG	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	3 cut(s)	306, 468, 506
EgeI	GGCGCC	3 cut(s)	37, 106, 423
EheI	GGCGCC	3 cut(s)	37, 106, 423
ErhI	CCWWGG	1 cut(s)	297
Esp3I	CGTCTC	3 cut(s)	103, 217, 250
FaeI	CATG	5 cut(s)	44, 464, 494, 715, 787
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FatI	CATG	5 cut(s)	40, 460, 490, 711, 783
FauI	CCCGC	5 cut(s)	478, 522, 561, 591, 651
FblI	GTMKAC	1 cut(s)	81
FriOI	GRGCYC	3 cut(s)	306, 468, 506
FspBI	CTAG	1 cut(s)	826
GlaI	GCGC	5 cut(s)	37, 106, 423, 615, 675
HaeII	RGCGCY	3 cut(s)	39, 108, 425
HaeIII	GGCC	7 cut(s)	264, 296, 323, 446, 489, 530, 629
HgaI	GACGC	2 cut(s)	209, 211
HhaI	GCGC	5 cut(s)	38, 107, 424, 616, 676
Hin1I	GRCGYC	6 cut(s)	36, 54, 78, 105, 201, 422
Hin1II	CATG	5 cut(s)	44, 464, 494, 715, 787
Hin6I	GCGC	5 cut(s)	36, 105, 422, 614, 674
HinP1I	GCGC	5 cut(s)	36, 105, 422, 614, 674
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	1 cut(s)	358
HphI	GGTGA	4 cut(s)	85, 181, 791, 821
Hpy166II	GTNNAC	4 cut(s)	58, 82, 142, 189
Hpy188I	TCNGA	6 cut(s)	217, 250, 278, 363, 758, 772
Hpy188III	TCNNGA	3 cut(s)	226, 232, 355
Hpy8I	GTNNAC	4 cut(s)	58, 82, 142, 189
Hpy99I	CGWCG	5 cut(s)	200, 203, 290, 356, 776
HpyAV	CCTTC	2 cut(s)	73, 313
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4IV	ACGT	3 cut(s)	54, 78, 774
HpyCH4V	TGCA	3 cut(s)	9, 310, 655
HpyF3I	CTNAG	1 cut(s)	693
HpySE526I	ACGT	3 cut(s)	54, 78, 774
Hsp92I	GRCGYC	6 cut(s)	36, 54, 78, 105, 201, 422
Hsp92II	CATG	5 cut(s)	44, 464, 494, 715, 787
HspAI	GCGC	5 cut(s)	36, 105, 422, 614, 674
KasI	GGCGCC	3 cut(s)	35, 104, 421
KpnI	GGTACC	1 cut(s)	643
KroI	GCCGGC	1 cut(s)	107
KroNI	GCCGGC	1 cut(s)	109
Kzo9I	GATC	5 cut(s)	30, 228, 234, 273, 753
LmnI	GCTCC	3 cut(s)	132, 301, 728
Lsp1109I	GCAGC	5 cut(s)	571, 601, 604, 607, 667
MabI	ACCWGGT	1 cut(s)	520
MaeI	CTAG	1 cut(s)	826
MaeII	ACGT	3 cut(s)	54, 78, 774
MaeIII	GTNAC	4 cut(s)	91, 355, 602, 779
MalI	GATC	5 cut(s)	32, 230, 236, 275, 755
MboI	GATC	5 cut(s)	30, 228, 234, 273, 753
MboII	GAAGA	1 cut(s)	382
MhlI	GDGCHC	3 cut(s)	306, 468, 506
MluCI	AATT	1 cut(s)	413
Mly113I	GGCGCC	3 cut(s)	36, 105, 422
MlyI	GAGTC	1 cut(s)	352
MmeI	TCCRAC	3 cut(s)	240, 273, 795
MnlI	CCTC	8 cut(s)	191, 203, 218, 359, 436, 692, 695, 698
MreI	CGCCGGCG	1 cut(s)	107
MroNI	GCCGGC	1 cut(s)	107
MspR9I	CCNGG	8 cut(s)	482, 496, 522, 536, 570, 600, 631, 660
MvaI	CCWGG	1 cut(s)	522
MvnI	CGCG	3 cut(s)	222, 614, 674
NaeI	GCCGGC	1 cut(s)	109
NarI	GGCGCC	3 cut(s)	36, 105, 422
NciI	CCSGG	7 cut(s)	482, 496, 536, 570, 600, 631, 660
NdeII	GATC	5 cut(s)	30, 228, 234, 273, 753
NgoMIV	GCCGGC	1 cut(s)	107
NlaIII	CATG	5 cut(s)	44, 464, 494, 715, 787
NlaIV	GGNNCC	7 cut(s)	37, 106, 157, 173, 265, 423, 641
NmeAIII	GCCGAG	2 cut(s)	398, 485
NmuCI	GTSAC	3 cut(s)	91, 355, 779
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 282
PdiI	GCCGGC	1 cut(s)	109
PflFI	GACNNNGTC	1 cut(s)	221
PinAI	ACCGGT	1 cut(s)	430
PleI	GAGTC	1 cut(s)	352
PluTI	GGCGCC	3 cut(s)	39, 108, 425
PpsI	GAGTC	1 cut(s)	352
Psp124BI	GAGCTC	2 cut(s)	306, 506
Psp6I	CCWGG	1 cut(s)	520
PspGI	CCWGG	1 cut(s)	520
PspN4I	GGNNCC	7 cut(s)	37, 106, 157, 173, 265, 423, 641
PspPI	GGNCC	4 cut(s)	263, 445, 487, 529
PsyI	GACNNNGTC	1 cut(s)	221
RsaI	GTAC	5 cut(s)	479, 611, 635, 641, 671
RsaNI	GTAC	5 cut(s)	478, 610, 634, 640, 670
SacI	GAGCTC	2 cut(s)	306, 506
Sau3AI	GATC	5 cut(s)	30, 228, 234, 273, 753
Sau96I	GGNCC	4 cut(s)	263, 445, 487, 529
SchI	GAGTC	1 cut(s)	352
ScrFI	CCNGG	8 cut(s)	482, 496, 522, 536, 570, 600, 631, 660
SduI	GDGCHC	3 cut(s)	306, 468, 506
SexAI	ACCWGGT	1 cut(s)	520
SfoI	GGCGCC	3 cut(s)	37, 106, 423
SgrAI	CRCCGGYG	2 cut(s)	107, 646
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	413
SspDI	GGCGCC	3 cut(s)	35, 104, 421
SspMI	CTAG	1 cut(s)	826
SstI	GAGCTC	2 cut(s)	306, 506
StyD4I	CCNGG	8 cut(s)	480, 494, 520, 534, 568, 598, 629, 658
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	97
TaiI	ACGT	3 cut(s)	57, 81, 777
TaqI	TCGA	3 cut(s)	195, 500, 819
TasI	AATT	1 cut(s)	413
TseFI	GTSAC	3 cut(s)	91, 355, 779
TseI	GCWGC	5 cut(s)	559, 589, 592, 595, 655
Tsp45I	GTSAC	3 cut(s)	91, 355, 779
Tth111I	GACNNNGTC	1 cut(s)	221
XagI	CCTNNNNNAGG	1 cut(s)	696
XapI	RAATTY	1 cut(s)	413
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	1 cut(s)	826
ZraI	GACGTC	2 cut(s)	55, 79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.