MD04G1202300.v1.1

Protein kinase C conserved region 2 (CalB)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
28827221 .. 28828069
849 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1202300.v1.1.491

Sequence Viewer

Length: 849 bp
ATGGATTGCAGGCCTCTGGAGGTAATCATCGACTCGGCCAACGACATCAAGGATGTCAACCTCTTCTCCAAGATGGACGTCTACGCCGCCGTTTCGGTCGCCGGCGACCCGCGCAACAAGAAGCAGAAGAACAAAACCCCCGTCGTCAAGGACGGAGGCACCAACCCCAAGTGGACCAGCTACCCCATCAGGTTCACCGTCGACGAAGCCGCCCTCCTCAACAACCGCCTCACCCTCAACATCAAGCTCGTCTCCGAACGCACTTTGGGAGACACCAAGATCGGCAAGGTCAAGATCCCGCTCAAGGAGCTACTAGACACCATGAGCGGCGGCGATGATCAGAAGAAGCAGATCAAGCACGTCAGCTACGGCCTCCGATCGTCGAGCGGAAGGCCCAAGGGGACCGTCAATTTCGGGTACAAATTCGGTGACAAGTTTTCGGTTCCGGTTCCAGTGCAGAGGAAAGTCCACGAGCCCGTGATGGCATACCCGACCGGACAGCCCGGGTCAAGCTCCGGGTACCCGCCCGCGGGTGCCTACCCACCTGCCCAAGCTTACCCATACCCGCCACCGCCTCATCAGCAACCGGGTTACGCGTACGCTCCACCGCCACAAGCCGGGTACGGATACCCGCCTCAGCCGGGGTACGGATACCCGCCGCAGCAAGTTGTGCACCCGCAGAAGCCTAAGAGGGGCGGAGGAGGGAACATGGCGATGGGTGTGGGAGCTGGGTTGCTGGGTGGATTGTTGATCGGGGATATGATTGGGGATGTCGGTGAGATGGGCGCTTACGATGCTGGGTACGATGCTGGGGTCGGTGATGACTTTGGTGGTGGCTTTGATTTCTAG

Protein Analysis

283

Amino Acids

30.06

Weight (kDa)

8.99

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 6 - 106 2.8e-12 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 553
AatII GACGTC 1 cut(s) 81
Acc36I ACCTGC 1 cut(s) 553
Acc65I GGTACC 1 cut(s) 519
AccB1I GGYRCC 3 cut(s) 158, 519, 533
AccBSI CCGCTC 3 cut(s) 301, 327, 387
AccI GTMKAC 2 cut(s) 81, 201
AccII CGCG 3 cut(s) 112, 530, 596
AclWI GGATC 1 cut(s) 289
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 1 cut(s) 422
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 6 cut(s) 419, 521, 599, 623, 647, 803
AfiI CCNNNNNNNGG 7 cut(s) 304, 529, 530, 617, 641, 647, 692
AflIII ACRYGT 1 cut(s) 594
AjiI CACGTC 1 cut(s) 361
AluBI AGCT 7 cut(s) 180, 247, 310, 366, 513, 554, 728
AluI AGCT 7 cut(s) 180, 247, 310, 366, 513, 554, 728
Alw21I GWGCWC 1 cut(s) 675
Alw26I GTCTC 2 cut(s) 256, 264
Alw44I GTGCAC 1 cut(s) 671
AlwI GGATC 1 cut(s) 289
Ama87I CYCGRG 1 cut(s) 503
AoxI GGCC 4 cut(s) 11, 36, 370, 392
ApaLI GTGCAC 1 cut(s) 671
ApeKI GCWGC 1 cut(s) 661
ApoI RAATTY 1 cut(s) 422
ArsI GACNNNNNNTTYG 2 cut(s) 126, 158
Asp718I GGTACC 1 cut(s) 519
AspLEI GCGC 2 cut(s) 114, 788
AspS9I GGNCC 3 cut(s) 174, 393, 402
AsuC2I CCSGG 6 cut(s) 504, 505, 517, 588, 619, 642
AsuHPI GGTGA 5 cut(s) 187, 223, 440, 788, 830
AvaI CYCGRG 1 cut(s) 503
AvaII GGWCC 2 cut(s) 174, 402
BaeGI GKGCMC 1 cut(s) 675
BanI GGYRCC 3 cut(s) 158, 519, 533
BanII GRGCYC 1 cut(s) 477
BauI CACGAG 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 675
BbvCI CCTCAGC 1 cut(s) 636
BbvI GCAGC 1 cut(s) 673
BccI CCATC 5 cut(s) 67, 194, 475, 709, 775
BceAI ACGGC 2 cut(s) 74, 385
BciVI GTATCC 2 cut(s) 620, 644
BclI TGATCA 1 cut(s) 337
BcnI CCSGG 6 cut(s) 504, 505, 517, 588, 619, 642
BcoDI GTCTC 2 cut(s) 256, 264
BfaI CTAG 2 cut(s) 314, 847
BfoI RGCGCY 1 cut(s) 789
BfuAI ACCTGC 1 cut(s) 553
BfuI GTATCC 2 cut(s) 620, 644
BisI GCNGC 6 cut(s) 87, 210, 328, 331, 659, 662
BlsI GCNGC 6 cut(s) 88, 211, 329, 332, 660, 663
Bme1390I CCNGG 6 cut(s) 504, 505, 517, 588, 619, 642
Bme18I GGWCC 2 cut(s) 174, 402
BmeT110I CYCGRG 1 cut(s) 503
BmgBI CACGTC 1 cut(s) 361
BmgT120I GGNCC 3 cut(s) 174, 393, 402
BmiI GGNNCC 6 cut(s) 160, 403, 444, 450, 521, 535
BmrFI CCNGG 6 cut(s) 504, 505, 517, 588, 619, 642
BmsI GCATC 2 cut(s) 784, 796
BpmI CTGGAG 1 cut(s) 38
Bpu10I CCTNAGC 1 cut(s) 636
BpuEI CTTGAG 1 cut(s) 287
BpuMI CCSGG 6 cut(s) 504, 505, 517, 588, 619, 642
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 4 cut(s) 396, 503, 528, 641
BsaWI WCCGGW 2 cut(s) 445, 494
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 7 cut(s) 304, 529, 530, 617, 641, 647, 692
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 452
BseDI CCNNGG 4 cut(s) 396, 503, 528, 641
BseGI GGATG 2 cut(s) 58, 775
BseLI CCNNNNNNNGG 7 cut(s) 304, 529, 530, 617, 641, 647, 692
BseMII CTCAG 1 cut(s) 650
BseNI ACTGG 1 cut(s) 452
BseRI GAGGAG 2 cut(s) 206, 714
BseSI GKGCMC 1 cut(s) 675
BseXI GCAGC 1 cut(s) 673
BseYI CCCAGC 4 cut(s) 728, 736, 797, 809
BsgI GTGCAG 1 cut(s) 476
Bsh1236I CGCG 3 cut(s) 112, 530, 596
Bsh1285I CGRYCG 3 cut(s) 99, 380, 495
BshFI GGCC 4 cut(s) 13, 38, 372, 394
BshNI GGYRCC 3 cut(s) 158, 519, 533
BsiEI CGRYCG 3 cut(s) 99, 380, 495
BsiHKAI GWGCWC 1 cut(s) 675
BsiHKCI CYCGRG 1 cut(s) 503
BsiSI CCGG 8 cut(s) 102, 446, 495, 504, 516, 587, 618, 641
BsiWI CGTACG 1 cut(s) 597
BslFI GGGAC 1 cut(s) 415
BslI CCNNNNNNNGG 7 cut(s) 304, 529, 530, 617, 641, 647, 692
BsmAI GTCTC 2 cut(s) 256, 264
BsmBI CGTCTC 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 415
BsnI GGCC 4 cut(s) 13, 38, 372, 394
BsoBI CYCGRG 1 cut(s) 503
Bsp1286I GDGCHC 2 cut(s) 477, 675
Bsp143I GATC 6 cut(s) 279, 294, 337, 351, 377, 750
BspANI GGCC 4 cut(s) 13, 38, 372, 394
BspCNI CTCAG 1 cut(s) 649
BspFNI CGCG 3 cut(s) 112, 530, 596
BspLI GGNNCC 6 cut(s) 160, 403, 444, 450, 521, 535
BspMI ACCTGC 1 cut(s) 553
BspPI GGATC 1 cut(s) 289
BspT107I GGYRCC 3 cut(s) 158, 519, 533
BsrBI CCGCTC 3 cut(s) 301, 327, 387
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 1 cut(s) 452
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 4 cut(s) 396, 503, 528, 641
BssMI GATC 6 cut(s) 279, 294, 337, 351, 377, 750
BssNI GRCGYC 1 cut(s) 78
BssSI CACGAG 1 cut(s) 470
BssT1I CCWWGG 1 cut(s) 396
Bst2BI CACGAG 1 cut(s) 470
Bst4CI ACNGT 2 cut(s) 199, 406
Bst6I CTCTTC 1 cut(s) 68
BstACI GRCGYC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 670
BstC8I GCNNGC 3 cut(s) 11, 103, 528
BstDEI CTNAG 2 cut(s) 636, 687
BstDSI CCRYGG 1 cut(s) 528
BstF5I GGATG 2 cut(s) 58, 775
BstFNI CGCG 3 cut(s) 112, 530, 596
BstH2I RGCGCY 1 cut(s) 789
BstHHI GCGC 2 cut(s) 114, 788
BstKTI GATC 6 cut(s) 282, 297, 340, 354, 380, 753
BstMAI GTCTC 2 cut(s) 256, 264
BstMBI GATC 6 cut(s) 279, 294, 337, 351, 377, 750
BstMCI CGRYCG 3 cut(s) 99, 380, 495
BstMWI GCNNNNNNNGC 6 cut(s) 111, 307, 355, 580, 670, 794
BstSCI CCNGG 6 cut(s) 502, 503, 515, 586, 617, 640
BstSLI GKGCMC 1 cut(s) 675
BstUI CGCG 3 cut(s) 112, 530, 596
BstV1I GCAGC 1 cut(s) 673
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BsuI GTATCC 2 cut(s) 620, 644
BsuRI GGCC 4 cut(s) 13, 38, 372, 394
BtgI CCRYGG 1 cut(s) 528
BtgZI GCGATG 2 cut(s) 348, 728
BtrI CACGTC 1 cut(s) 361
BtsCI GGATG 2 cut(s) 58, 775
BtsIMutI CAGTG 1 cut(s) 459
BveI ACCTGC 1 cut(s) 553
Cac8I GCNNGC 3 cut(s) 11, 103, 528
CfoI GCGC 2 cut(s) 114, 788
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 3 cut(s) 174, 393, 402
Cfr42I CCGCGG 1 cut(s) 531
Cfr9I CCCGGG 1 cut(s) 503
Csp6I GTAC 6 cut(s) 418, 520, 598, 622, 646, 802
CviAII CATG 2 cut(s) 322, 709
CviQI GTAC 6 cut(s) 418, 520, 598, 622, 646, 802
DdeI CTNAG 2 cut(s) 636, 687
DpnI GATC 6 cut(s) 281, 296, 339, 353, 379, 752
DpnII GATC 6 cut(s) 279, 294, 337, 351, 377, 750
EaeI YGGCCR 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
EciI GGCGGA 1 cut(s) 711
Eco130I CCWWGG 1 cut(s) 396
Eco147I AGGCCT 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 477
Eco47I GGWCC 2 cut(s) 174, 402
Eco88I CYCGRG 1 cut(s) 503
EcoT14I CCWWGG 1 cut(s) 396
EcoT38I GRGCYC 1 cut(s) 477
ErhI CCWWGG 1 cut(s) 396
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 2 cut(s) 325, 712
FaiI YATR 5 cut(s) 323, 487, 562, 710, 761
FaqI GGGAC 1 cut(s) 415
FatI CATG 2 cut(s) 321, 708
FauI CCCGC 9 cut(s) 117, 306, 523, 531, 535, 573, 639, 663, 684
FbaI TGATCA 1 cut(s) 337
FblI GTMKAC 2 cut(s) 81, 201
Fnu4HI GCNGC 6 cut(s) 87, 210, 328, 331, 659, 662
FokI GGATG 2 cut(s) 65, 782
FriOI GRGCYC 1 cut(s) 477
Fsp4HI GCNGC 6 cut(s) 87, 210, 328, 331, 659, 662
FspBI CTAG 2 cut(s) 314, 847
GlaI GCGC 2 cut(s) 113, 787
GluI GCNGC 6 cut(s) 87, 210, 328, 331, 659, 662
GsaI CCCAGC 4 cut(s) 732, 740, 801, 813
GsuI CTGGAG 1 cut(s) 38
HaeII RGCGCY 1 cut(s) 789
HaeIII GGCC 4 cut(s) 13, 38, 372, 394
HapII CCGG 8 cut(s) 102, 446, 495, 504, 516, 587, 618, 641
HhaI GCGC 2 cut(s) 114, 788
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 325, 712
Hin6I GCGC 2 cut(s) 112, 786
HinP1I GCGC 2 cut(s) 112, 786
HincII GTYRAC 2 cut(s) 58, 202
HindII GTYRAC 2 cut(s) 58, 202
HindIII AAGCTT 1 cut(s) 552
HinfI GANTC 1 cut(s) 32
HpaII CCGG 8 cut(s) 102, 446, 495, 504, 516, 587, 618, 641
HphI GGTGA 5 cut(s) 187, 223, 440, 788, 830
Hpy166II GTNNAC 7 cut(s) 58, 82, 174, 195, 202, 469, 673
Hpy188I TCNGA 3 cut(s) 256, 342, 377
Hpy188III TCNNGA 2 cut(s) 17, 292
Hpy8I GTNNAC 7 cut(s) 58, 82, 174, 195, 202, 469, 673
Hpy99I CGWCG 4 cut(s) 146, 203, 206, 385
HpyAV CCTTC 1 cut(s) 384
HpyCH4III ACNGT 2 cut(s) 199, 406
HpyCH4IV ACGT 2 cut(s) 78, 360
HpyCH4V TGCA 3 cut(s) 9, 457, 673
HpyF10VI GCNNNNNNNGC 6 cut(s) 111, 307, 355, 580, 670, 794
HpyF3I CTNAG 2 cut(s) 636, 687
HpySE526I ACGT 2 cut(s) 78, 360
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 325, 712
HspAI GCGC 2 cut(s) 112, 786
KpnI GGTACC 1 cut(s) 523
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 337
KspI CCGCGG 1 cut(s) 531
Kzo9I GATC 6 cut(s) 279, 294, 337, 351, 377, 750
LmnI GCTCC 4 cut(s) 307, 518, 607, 725
Lsp1109I GCAGC 1 cut(s) 673
LweI GCATC 2 cut(s) 784, 796
MaeI CTAG 2 cut(s) 314, 847
MaeII ACGT 2 cut(s) 78, 360
MaeIII GTNAC 2 cut(s) 428, 590
MalI GATC 6 cut(s) 281, 296, 339, 353, 379, 752
MbiI CCGCTC 3 cut(s) 301, 327, 387
MboI GATC 6 cut(s) 279, 294, 337, 351, 377, 750
MboII GAAGA 3 cut(s) 55, 139, 355
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 2 cut(s) 477, 675
MluCI AATT 2 cut(s) 409, 422
MluI ACGCGT 1 cut(s) 594
MlyI GAGTC 1 cut(s) 26
MreI CGCCGGCG 1 cut(s) 101
MroNI GCCGGC 1 cut(s) 101
MslI CAYNNNNRTG 1 cut(s) 713
MspA1I CMGCKG 1 cut(s) 530
MspI CCGG 8 cut(s) 102, 446, 495, 504, 516, 587, 618, 641
MspR9I CCNGG 6 cut(s) 504, 505, 517, 588, 619, 642
MvnI CGCG 3 cut(s) 112, 530, 596
MwoI GCNNNNNNNGC 6 cut(s) 111, 307, 355, 580, 670, 794
NaeI GCCGGC 1 cut(s) 103
NciI CCSGG 6 cut(s) 504, 505, 517, 588, 619, 642
NdeII GATC 6 cut(s) 279, 294, 337, 351, 377, 750
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 2 cut(s) 325, 712
NlaIV GGNNCC 6 cut(s) 160, 403, 444, 450, 521, 535
NmeAIII GCCGAG 1 cut(s) 14
NmuCI GTSAC 1 cut(s) 428
PaqCI CACCTGC 1 cut(s) 553
PceI AGGCCT 1 cut(s) 13
PdiI GCCGGC 1 cut(s) 103
Pfl23II CGTACG 1 cut(s) 597
PkrI GCNGC 6 cut(s) 88, 211, 329, 332, 660, 663
Ple19I CGATCG 1 cut(s) 380
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
PspFI CCCAGC 4 cut(s) 728, 736, 797, 809
PspLI CGTACG 1 cut(s) 597
PspN4I GGNNCC 6 cut(s) 160, 403, 444, 450, 521, 535
PspPI GGNCC 3 cut(s) 174, 393, 402
PsuI RGATCY 1 cut(s) 294
PvuI CGATCG 1 cut(s) 380
RsaI GTAC 6 cut(s) 419, 521, 599, 623, 647, 803
RsaNI GTAC 6 cut(s) 418, 520, 598, 622, 646, 802
RseI CAYNNNNRTG 1 cut(s) 713
SacII CCGCGG 1 cut(s) 531
SalI GTCGAC 1 cut(s) 200
SatI GCNGC 6 cut(s) 87, 210, 328, 331, 659, 662
Sau3AI GATC 6 cut(s) 279, 294, 337, 351, 377, 750
Sau96I GGNCC 3 cut(s) 174, 393, 402
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 6 cut(s) 504, 505, 517, 588, 619, 642
SduI GDGCHC 2 cut(s) 477, 675
SfaNI GCATC 2 cut(s) 784, 796
Sfr303I CCGCGG 1 cut(s) 531
SgrAI CRCCGGYG 1 cut(s) 101
SgrBI CCGCGG 1 cut(s) 531
SgrDI CGTCGACG 1 cut(s) 200
SinI GGWCC 2 cut(s) 174, 402
SmaI CCCGGG 1 cut(s) 505
SmiMI CAYNNNNRTG 1 cut(s) 713
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 2 cut(s) 409, 422
SseBI AGGCCT 1 cut(s) 13
SspMI CTAG 2 cut(s) 314, 847
StuI AGGCCT 1 cut(s) 13
StyD4I CCNGG 6 cut(s) 502, 503, 515, 586, 617, 640
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 2 cut(s) 199, 406
TaiI ACGT 2 cut(s) 81, 363
TaqI TCGA 3 cut(s) 30, 201, 383
TaqII GACCGA 1 cut(s) 85
TasI AATT 2 cut(s) 409, 422
TauI GCSGC 5 cut(s) 89, 212, 330, 333, 661
TscAI CASTG 1 cut(s) 459
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 1 cut(s) 661
Tsp45I GTSAC 1 cut(s) 428
TspGWI ACGGA 3 cut(s) 168, 639, 663
TspMI CCCGGG 1 cut(s) 503
TspRI CASTG 1 cut(s) 459
VneI GTGCAC 1 cut(s) 671
VpaK11BI GGWCC 2 cut(s) 174, 402
XapI RAATTY 1 cut(s) 422
XmaI CCCGGG 1 cut(s) 503
XmiI GTMKAC 2 cut(s) 81, 201
XspI CTAG 2 cut(s) 314, 847
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.