Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004343.1

Orthogroup ID

OG0001785

Physical Location & Seq

Genomic Coordinates Reverse (-)

3604 .. 4155

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004343.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgtattgcacgcctttggagctaacgctggtctccgcccatgacatcaagtacgtcaacctcttctccaagatgaacgtatacgccgtcgtttcgatcaccggcggcgccaagaagcagaagctcaagacccccgcccacaagggcggtggcaccaatcccaagtggaaccactccctcaagttcacgctcgacgacgccgctctcaaccaggaccacctcaaagtcgagattcagctcgtctcggaccgcaccctccgcgacaccaagatcggaaaagtcattattccggcaaaggagttgcttcagtattccggcacgggcgtgagctaccagcttgtgacgcgcaagggcagatccaaagggagcgtcagcttcaggtacaagttgggcgagaaatactgggttgagcccgagccaaaacccgagcctgtcatggcttaccccgcggcgggttatggaaacccgccagttgtgcagccgccgaagaagtccaaaaaaggaaaactgacgcttggtttgtttgctttgataattatgggtggattctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

Protein Analysis

183

Amino Acids

20.17

Weight (kDa)

9.84

Isoelectric Point (pI)

25.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09070
fragaria_vesca	FvH4_6g06320 FvH4_6g06320 FvH4_6g06321
malus_domestica	MD04G1202300.v1.1 MD12G1216300.v1.1
prunus_persica	Prupe.6G322500_v2.0.a1 Prupe.6G322500_v2.0.a1 Prupe.6G322600_v2.0.a1
pyrus_communis	pycom04g17850 pycom12g20180
rosa_chinensis	RchiOBHm_Chr3g0455361 RchiOBHm_Chr3g0455371
rosa_laevigata	RLG00000025110 RLG00000025366
rosa_multiflora	Rmu_co8331519.1_g000001 Rmu_sc0002169.1_g000048 Rmu_sc0002169.1_g000049 Rmu_sc0002435.1_g000019 Rmu_sc0003222.1_g000014 Rmu_sc0004087.1_g000009 Rmu_sc0004343.1_g000002 Rmu_sc0004894.1_g000012 Rmu_sc0012909.1_g000009 Rmu_sc0024960.1_g000001 Rmu_sc0038181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379190 Rroxscaffold_6G00420510 Rroxscaffold_6G00424320 Rroxscaffold_6G00424330
rosa_rugosa	Rorug03G0006800 Rorug03G0006900 Rorug03G0033900 Rorug03G0287400
rosa_samantha	Rh3AG066400 Rh3AG066500 Rh3AG091800 Rh3BG068700 Rh3BG068800 Rh3CG067100 Rh3CG067200 Rh3CG095600 Rh3DG068600 Rh4BG236100
rosa_wichuraiana	Rw3G005240 Rw3G005250 Rw7G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	107, 152
AccBSI	CCGCTC	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	3 cut(s)	261, 346, 449
AclWI	GGATC	1 cut(s)	351
AcuI	CTGAAG	2 cut(s)	290, 361
AcyI	GRCGYC	2 cut(s)	108, 198
AfaI	GTAC	2 cut(s)	53, 383
AfiI	CCNNNNNNNGG	2 cut(s)	451, 452
AjnI	CCWGG	1 cut(s)	210
AleI	CACNNNNGTG	1 cut(s)	323
AluBI	AGCT	6 cut(s)	22, 124, 238, 330, 337, 375
AluI	AGCT	6 cut(s)	22, 124, 238, 330, 337, 375
Alw26I	GTCTC	2 cut(s)	37, 247
AlwI	GGATC	1 cut(s)	351
Ama87I	CYCGRG	2 cut(s)	413, 425
ApeKI	GCWGC	1 cut(s)	478
ArsI	GACNNNNNNTTYG	4 cut(s)	354, 386, 502, 534
AspLEI	GCGC	2 cut(s)	110, 348
AspS9I	GGNCC	2 cut(s)	214, 247
AsuHPI	GGTGA	1 cut(s)	91
AvaI	CYCGRG	2 cut(s)	413, 425
AvaII	GGWCC	2 cut(s)	214, 247
BanI	GGYRCC	2 cut(s)	107, 152
BanII	GRGCYC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	490
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	212
BcoDI	GTCTC	2 cut(s)	37, 247
BfaI	CTAG	1 cut(s)	550
BfoI	RGCGCY	1 cut(s)	111
BisI	GCNGC	5 cut(s)	106, 201, 450, 479, 482
BlsI	GCNGC	5 cut(s)	107, 202, 451, 480, 483
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	2 cut(s)	214, 247
BmeT110I	CYCGRG	2 cut(s)	413, 425
BmgT120I	GGNCC	2 cut(s)	214, 247
BmiI	GGNNCC	3 cut(s)	109, 154, 170
BmrFI	CCNGG	1 cut(s)	212
BmrI	ACTGGG	1 cut(s)	412
BmuI	ACTGGG	1 cut(s)	412
BpuEI	CTTGAG	2 cut(s)	110, 164
BsaHI	GRCGYC	2 cut(s)	108, 198
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	447
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	2 cut(s)	451, 452
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	407, 470
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	447
BseLI	CCNNNNNNNGG	2 cut(s)	451, 452
BseNI	ACTGG	2 cut(s)	407, 470
BseXI	GCAGC	1 cut(s)	490
BsgI	GTGCAG	1 cut(s)	497
Bsh1236I	CGCG	3 cut(s)	261, 346, 449
BshNI	GGYRCC	2 cut(s)	107, 152
BsiHKCI	CYCGRG	2 cut(s)	413, 425
BsiSI	CCGG	3 cut(s)	102, 290, 315
BslI	CCNNNNNNNGG	2 cut(s)	451, 452
BsmAI	GTCTC	2 cut(s)	37, 247
BsmBI	CGTCTC	1 cut(s)	247
Bso31I	GGTCTC	1 cut(s)	37
BsoBI	CYCGRG	2 cut(s)	413, 425
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	3 cut(s)	96, 270, 356
BspFNI	CGCG	3 cut(s)	261, 346, 449
BspLI	GGNNCC	3 cut(s)	109, 154, 170
BspPI	GGATC	1 cut(s)	351
BspT107I	GGYRCC	2 cut(s)	107, 152
BspTNI	GGTCTC	1 cut(s)	37
BsrBI	CCGCTC	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	407, 470
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	3 cut(s)	96, 270, 356
BssNAI	GTATAC	1 cut(s)	82
BssNI	GRCGYC	2 cut(s)	108, 198
Bst1107I	GTATAC	1 cut(s)	82
Bst2UI	CCWGG	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	2 cut(s)	108, 198
BstC8I	GCNNGC	1 cut(s)	11
BstDSI	CCRYGG	1 cut(s)	447
BstFNI	CGCG	3 cut(s)	261, 346, 449
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	2 cut(s)	110, 348
BstKTI	GATC	3 cut(s)	99, 273, 359
BstMAI	GTCTC	2 cut(s)	37, 247
BstMBI	GATC	3 cut(s)	96, 270, 356
BstMWI	GCNNNNNNNGC	5 cut(s)	19, 258, 343, 446, 475
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	210
BstUI	CGCG	3 cut(s)	261, 346, 449
BstV1I	GCAGC	1 cut(s)	490
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
BstZ17I	GTATAC	1 cut(s)	82
BtgI	CCRYGG	1 cut(s)	447
Cac8I	GCNNGC	1 cut(s)	11
CfoI	GCGC	2 cut(s)	110, 348
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	214, 247
Cfr42I	CCGCGG	1 cut(s)	450
CpoI	CGGWCCG	1 cut(s)	247
CseI	GACGC	4 cut(s)	206, 352, 358, 520
Csp6I	GTAC	2 cut(s)	52, 382
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CspI	CGGWCCG	1 cut(s)	247
CviAII	CATG	2 cut(s)	41, 436
CviQI	GTAC	2 cut(s)	52, 382
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	3 cut(s)	98, 272, 358
DpnII	GATC	3 cut(s)	96, 270, 356
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EciI	GGCGGA	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	2 cut(s)	214, 247
Eco57I	CTGAAG	2 cut(s)	290, 361
Eco88I	CYCGRG	2 cut(s)	413, 425
EcoRII	CCWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	414
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
Esp3I	CGTCTC	1 cut(s)	247
FaeI	CATG	2 cut(s)	44, 439
FaiI	YATR	5 cut(s)	42, 82, 437, 459, 539
FatI	CATG	2 cut(s)	40, 435
FauI	CCCGC	4 cut(s)	142, 445, 454, 474
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	5 cut(s)	106, 201, 450, 479, 482
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	5 cut(s)	106, 201, 450, 479, 482
FspBI	CTAG	1 cut(s)	550
GlaI	GCGC	2 cut(s)	109, 347
GluI	GCNGC	5 cut(s)	106, 201, 450, 479, 482
HaeII	RGCGCY	1 cut(s)	111
HapII	CCGG	3 cut(s)	102, 290, 315
HgaI	GACGC	4 cut(s)	206, 352, 358, 520
HhaI	GCGC	2 cut(s)	110, 348
Hin1I	GRCGYC	2 cut(s)	108, 198
Hin1II	CATG	2 cut(s)	44, 439
Hin6I	GCGC	2 cut(s)	108, 346
HinP1I	GCGC	2 cut(s)	108, 346
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	2 cut(s)	232, 546
HpaII	CCGG	3 cut(s)	102, 290, 315
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	3 cut(s)	58, 82, 186
Hpy188I	TCNGA	2 cut(s)	247, 275
Hpy188III	TCNNGA	2 cut(s)	127, 229
Hpy8I	GTNNAC	3 cut(s)	58, 82, 186
Hpy99I	CGWCG	3 cut(s)	92, 197, 200
HpyCH4IV	ACGT	2 cut(s)	54, 78
HpyCH4V	TGCA	2 cut(s)	9, 478
HpyF10VI	GCNNNNNNNGC	5 cut(s)	19, 258, 343, 446, 475
HpySE526I	ACGT	2 cut(s)	54, 78
Hsp92I	GRCGYC	2 cut(s)	108, 198
Hsp92II	CATG	2 cut(s)	44, 439
HspAI	GCGC	2 cut(s)	108, 346
KasI	GGCGCC	1 cut(s)	107
KspI	CCGCGG	1 cut(s)	450
Kzo9I	GATC	3 cut(s)	96, 270, 356
LmnI	GCTCC	2 cut(s)	19, 366
Lsp1109I	GCAGC	1 cut(s)	490
MaeI	CTAG	1 cut(s)	550
MaeII	ACGT	2 cut(s)	54, 78
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	3 cut(s)	98, 272, 358
MbiI	CCGCTC	1 cut(s)	203
MboI	GATC	3 cut(s)	96, 270, 356
MboII	GAAGA	2 cut(s)	55, 499
MflI	RGATCY	1 cut(s)	356
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	1 cut(s)	534
Mly113I	GGCGCC	1 cut(s)	108
MnlI	CCTC	4 cut(s)	71, 188, 230, 266
MslI	CAYNNNNRTG	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	3 cut(s)	102, 290, 315
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	3 cut(s)	261, 346, 449
MwoI	GCNNNNNNNGC	5 cut(s)	19, 258, 343, 446, 475
NarI	GGCGCC	1 cut(s)	108
NdeII	GATC	3 cut(s)	96, 270, 356
NlaIII	CATG	2 cut(s)	44, 439
NlaIV	GGNNCC	3 cut(s)	109, 154, 170
NmuCI	GTSAC	1 cut(s)	340
OliI	CACNNNNGTG	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PfeI	GAWTC	2 cut(s)	232, 546
PkrI	GCNGC	5 cut(s)	107, 202, 451, 480, 483
PluTI	GGCGCC	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	3 cut(s)	109, 154, 170
PspPI	GGNCC	2 cut(s)	214, 247
PsuI	RGATCY	1 cut(s)	356
RsaI	GTAC	2 cut(s)	53, 383
RsaNI	GTAC	2 cut(s)	52, 382
RseI	CAYNNNNRTG	1 cut(s)	323
Rsr2I	CGGWCCG	1 cut(s)	247
RsrII	CGGWCCG	1 cut(s)	247
SacII	CCGCGG	1 cut(s)	450
SatI	GCNGC	5 cut(s)	106, 201, 450, 479, 482
Sau3AI	GATC	3 cut(s)	96, 270, 356
Sau96I	GGNCC	2 cut(s)	214, 247
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	414
SfoI	GGCGCC	1 cut(s)	109
Sfr303I	CCGCGG	1 cut(s)	450
SgrAI	CRCCGGYG	1 cut(s)	101
SgrBI	CCGCGG	1 cut(s)	450
SinI	GGWCC	2 cut(s)	214, 247
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	2 cut(s)	125, 179
SmoI	CTYRAG	2 cut(s)	125, 179
Sse9I	AATT	1 cut(s)	534
SspDI	GGCGCC	1 cut(s)	107
SspMI	CTAG	1 cut(s)	550
StyD4I	CCNGG	1 cut(s)	210
TaiI	ACGT	2 cut(s)	57, 81
TaqI	TCGA	3 cut(s)	95, 192, 228
TasI	AATT	1 cut(s)	534
TauI	GCSGC	4 cut(s)	108, 203, 452, 484
TfiI	GAWTC	2 cut(s)	232, 546
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	1 cut(s)	478
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	89
VpaK11BI	GGWCC	2 cut(s)	214, 247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.